Wall clock time and date at job start Mon Mar 30 2020 00:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31642 * 1 3 3 Si 1.86798 * 120.00527 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00538 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00288 * 3 2 1 6 6 H 1.48498 * 109.47210 * 149.99999 * 3 2 1 7 7 C 1.38675 * 119.99738 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00298 * 179.97438 * 7 2 1 9 9 S 1.76208 * 119.99936 * 359.72614 * 7 2 1 10 10 C 1.76198 * 99.99674 * 179.97438 * 9 7 2 11 11 N 1.31395 * 126.49546 * 0.02562 * 10 9 7 12 12 N 1.28537 * 109.79796 * 179.97438 * 11 10 9 13 13 C 1.30488 * 110.05641 * 0.02562 * 12 11 10 14 14 C 1.50709 * 126.31460 * 180.02562 * 13 12 11 15 15 C 1.53180 * 109.53898 * 59.53124 * 14 13 12 16 16 C 1.53089 * 109.16032 * 183.15404 * 15 14 13 17 17 O 1.42900 * 109.41876 * 57.61060 * 16 15 14 18 18 C 1.42906 * 114.09318 * 298.84104 * 17 16 15 19 19 C 1.53096 * 109.41459 * 61.16023 * 18 17 16 20 20 N 1.36478 * 107.37287 * 359.75879 * 13 12 11 21 21 N 1.36607 * 127.12598 * 180.26855 * 20 13 12 22 22 H 0.97000 * 119.99445 * 359.97438 * 1 2 3 23 23 H 1.08991 * 109.54419 * 179.79663 * 14 13 12 24 24 H 1.09006 * 109.52435 * 303.06151 * 15 14 13 25 25 H 1.09002 * 109.52400 * 63.24697 * 15 14 13 26 26 H 1.09001 * 109.47964 * 297.62122 * 16 15 14 27 27 H 1.09002 * 109.48087 * 177.59279 * 16 15 14 28 28 H 1.08994 * 109.48476 * 301.17333 * 18 17 16 29 29 H 1.09002 * 109.47732 * 181.13490 * 18 17 16 30 30 H 1.09002 * 109.51802 * 182.48497 * 19 18 17 31 31 H 1.09000 * 109.52331 * 62.29207 * 19 18 17 32 32 H 1.00895 * 110.99717 * 270.16243 * 21 20 13 33 33 H 1.00902 * 110.99786 * 34.10588 * 21 20 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2506 1.6176 0.0000 4 1 2.4980 2.0464 -1.4000 5 1 1.4480 2.6526 0.7001 6 1 3.5481 1.4400 0.7000 7 6 2.0097 -1.2010 -0.0005 8 1 3.0897 -1.2011 -0.0010 9 16 1.1286 -2.7269 0.0061 10 6 2.4784 -3.8595 0.0019 11 7 3.7560 -3.5527 -0.0039 12 7 4.4617 -4.6270 -0.0049 13 6 3.6830 -5.6740 -0.0003 14 6 4.1247 -7.1149 0.0008 15 6 4.9790 -7.3879 1.2426 16 6 5.4879 -8.8309 1.1951 17 8 6.2304 -9.0334 -0.0089 18 6 5.4699 -8.8384 -1.2030 19 6 4.9603 -7.3956 -1.2519 20 7 2.3947 -5.2236 0.0093 21 7 1.2570 -5.9797 0.0218 22 1 -0.4849 0.8401 0.0004 23 1 3.2496 -7.7645 0.0086 24 1 5.8268 -6.7029 1.2594 25 1 4.3754 -7.2438 2.1388 26 1 4.6406 -9.5162 1.2194 27 1 6.1315 -9.0179 2.0548 28 1 4.6224 -9.5237 -1.2103 29 1 6.1006 -9.0307 -2.0710 30 1 4.3433 -7.2572 -2.1398 31 1 5.8077 -6.7109 -1.2856 32 1 0.9492 -6.1853 -0.9168 33 1 1.3922 -6.8276 0.5518 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322093234.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:35 Heat of formation + Delta-G solvation = 39.056621 kcal Electronic energy + Delta-G solvation = -18358.689288 eV Core-core repulsion = 15354.321274 eV Total energy + Delta-G solvation = -3004.368014 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.24183 -39.39810 -35.95808 -34.50049 -32.63417 -31.32751 -29.59212 -29.09890 -25.88646 -25.18652 -23.74159 -22.11243 -21.55018 -19.90328 -18.42039 -17.26571 -17.03248 -16.37354 -16.20061 -15.43948 -14.96577 -14.90440 -14.70032 -14.51622 -13.82357 -13.40284 -12.92892 -12.59208 -11.76412 -11.56550 -11.50162 -11.16149 -11.11133 -11.06765 -10.90098 -10.62229 -10.50791 -10.16910 -9.89968 -9.77157 -9.59585 -9.12668 -8.83042 -8.75114 -6.73496 -6.43919 -4.17159 2.25235 2.33534 3.04791 3.21356 3.25924 3.35914 3.49576 3.65115 4.03725 4.16629 4.46311 4.59211 4.78577 4.78925 4.98965 4.99696 5.02410 5.11552 5.22053 5.36053 5.40356 5.44894 5.65110 5.82175 6.01600 6.05810 6.09123 6.32699 6.59878 6.75626 6.96108 7.59780 7.93314 8.39766 9.08040 9.39773 10.63980 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.040177 B = 0.004337 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 696.756455 B = 6454.565296 C = 6819.171352 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.077 3.923 3 Si 0.931 3.069 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.541 4.541 8 H 0.104 0.896 9 S 0.163 5.837 10 C 0.195 3.805 11 N -0.308 5.308 12 N -0.269 5.269 13 C 0.106 3.894 14 C 0.015 3.985 15 C -0.146 4.146 16 C 0.063 3.937 17 O -0.381 6.381 18 C 0.064 3.936 19 C -0.145 4.145 20 N -0.326 5.326 21 N -0.581 5.581 22 H 0.274 0.726 23 H 0.072 0.928 24 H 0.088 0.912 25 H 0.074 0.926 26 H 0.049 0.951 27 H 0.097 0.903 28 H 0.049 0.951 29 H 0.097 0.903 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.357 0.643 33 H 0.363 0.637 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.142 -17.959 -0.634 18.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C -0.133 4.133 3 Si 0.756 3.244 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.690 4.690 8 H 0.122 0.878 9 S 0.396 5.604 10 C -0.175 4.175 11 N -0.155 5.155 12 N -0.110 5.110 13 C -0.166 4.166 14 C -0.007 4.007 15 C -0.184 4.184 16 C -0.013 4.013 17 O -0.300 6.300 18 C -0.013 4.013 19 C -0.184 4.184 20 N -0.113 5.113 21 N -0.210 5.210 22 H 0.083 0.917 23 H 0.090 0.910 24 H 0.107 0.893 25 H 0.093 0.907 26 H 0.067 0.933 27 H 0.115 0.885 28 H 0.067 0.933 29 H 0.115 0.885 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.174 0.826 33 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 3.873 -16.567 -0.267 17.016 hybrid contribution 0.556 -0.322 -0.480 0.802 sum 4.429 -16.889 -0.746 17.476 Atomic orbital electron populations 1.69956 1.06067 1.28393 1.46877 1.25056 0.95140 0.99574 0.93487 0.85949 0.79653 0.80105 0.78684 1.19961 1.20686 1.19018 1.23302 0.97383 0.89765 1.58547 0.87845 1.83697 0.97019 0.94209 1.85483 1.28337 1.02181 0.84199 1.02792 1.74919 0.98631 1.17724 1.24181 1.73862 1.26654 0.94569 1.15937 1.24772 0.81701 0.98026 1.12061 1.19325 0.97796 0.86621 0.96918 1.22246 1.00983 0.98168 0.97030 1.22601 0.96249 0.94687 0.87805 1.87947 1.37981 1.90342 1.13739 1.22590 0.95953 0.94654 0.88112 1.22241 1.01081 0.98236 0.96845 1.44975 1.01538 1.05180 1.59653 1.59489 1.15788 1.24720 1.20998 0.91660 0.91019 0.89325 0.90690 0.93273 0.88467 0.93312 0.88501 0.90914 0.89310 0.82603 0.82031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.74 13.22 55.48 0.73 -24.01 16 2 C 0.08 2.11 5.49 -17.47 -0.10 2.01 16 3 Si 0.93 21.49 29.55 -169.99 -5.02 16.46 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -15.36 9.37 30.89 0.29 -15.07 16 8 H 0.10 3.03 6.93 -52.49 -0.36 2.67 16 9 S 0.16 4.16 21.85 -107.50 -2.35 1.81 16 10 C 0.19 4.59 8.18 -88.12 -0.72 3.86 16 11 N -0.31 -7.75 11.04 30.72 0.34 -7.41 16 12 N -0.27 -5.90 12.19 32.97 0.40 -5.49 16 13 C 0.11 1.86 6.64 -154.10 -1.02 0.84 16 14 C 0.01 0.18 2.66 -91.58 -0.24 -0.07 16 15 C -0.15 -1.66 5.40 -26.59 -0.14 -1.80 16 16 C 0.06 0.58 6.84 37.20 0.25 0.84 16 17 O -0.38 -4.21 10.77 -35.23 -0.38 -4.59 16 18 C 0.06 0.58 6.84 37.21 0.25 0.84 16 19 C -0.15 -1.64 5.40 -26.59 -0.14 -1.78 16 20 N -0.33 -6.02 3.80 -9.90 -0.04 -6.05 16 21 N -0.58 -7.90 10.36 60.35 0.63 -7.27 16 22 H 0.27 7.17 8.31 -40.82 -0.34 6.84 16 23 H 0.07 0.68 7.22 -51.93 -0.38 0.30 16 24 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 25 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.36 4.00 9.21 -181.37 -1.67 2.34 16 33 H 0.36 3.61 8.20 -181.36 -1.49 2.13 16 LS Contribution 295.94 15.07 4.46 4.46 Total: -1.00 -33.50 295.94 -9.21 -42.72 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -6.41 Total: -0.29 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: -1.57 Total: -10.33 kcal Atomic # 7 Polarization: -52.31 SS G_CDS: 2.06 Total: -50.24 kcal Atomic # 8 Polarization: -4.21 SS G_CDS: -0.38 Total: -4.59 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: 4.16 SS G_CDS: -2.35 Total: 1.81 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -33.50 -9.21 -42.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322093234.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.775 kcal (2) G-P(sol) polarization free energy of solvation -33.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.718 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds