Wall clock time and date at job start Mon Mar 30 2020 01:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86801 * 120.00292 * 2 1 4 4 H 1.48504 * 109.46935 * 240.00476 * 3 2 1 5 5 H 1.48502 * 109.46673 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47302 * 120.00359 * 3 2 1 7 7 C 1.38949 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00049 * 179.97438 * 7 2 1 9 9 N 1.37100 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00001 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00229 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99646 * 179.97438 * 10 9 7 13 13 O 1.45196 * 109.46837 * 179.97438 * 12 10 9 14 14 C 1.34225 * 116.99947 * 180.02562 * 13 12 10 15 15 O 1.20820 * 120.00210 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00005 * 180.02562 * 14 13 12 17 17 N 1.46498 * 109.47501 * 179.97438 * 16 14 13 18 18 C 1.46768 * 124.34879 * 89.99466 * 17 16 14 19 19 C 1.54480 * 105.55098 * 197.08340 * 18 17 16 20 20 C 1.54631 * 101.76472 * 334.54015 * 19 18 17 21 21 C 1.34621 * 124.47196 * 270.02709 * 17 16 14 22 22 O 1.21286 * 124.90539 * 359.55259 * 21 17 16 23 23 H 0.97004 * 119.99471 * 359.97438 * 1 2 3 24 24 H 0.96996 * 119.99832 * 0.02562 * 9 7 2 25 25 H 1.09003 * 109.47071 * 59.99766 * 12 10 9 26 26 H 1.08991 * 109.46952 * 299.99624 * 12 10 9 27 27 H 1.09002 * 109.47506 * 59.99681 * 16 14 13 28 28 H 1.08998 * 109.47494 * 299.99500 * 16 14 13 29 29 H 1.09002 * 110.24468 * 78.03845 * 18 17 16 30 30 H 1.09002 * 110.24463 * 316.12602 * 18 17 16 31 31 H 1.08995 * 110.97082 * 92.66028 * 19 18 17 32 32 H 1.09001 * 110.96924 * 216.42557 * 19 18 17 33 33 H 1.09000 * 110.48694 * 143.47575 * 20 19 18 34 34 H 1.08994 * 110.49106 * 266.12244 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6963 -1.2126 5 1 1.2832 2.7464 0.0006 6 1 3.1020 1.6963 1.2124 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5580 -0.0010 12 6 1.2436 -4.8630 0.0000 13 8 2.1871 -5.9666 -0.0007 14 6 1.6741 -7.2069 -0.0008 15 8 0.4763 -7.3653 0.0001 16 6 2.5920 -8.4021 -0.0010 17 7 1.7942 -9.6308 -0.0005 18 6 1.3426 -10.3254 -1.2120 19 6 0.2093 -11.2683 -0.7506 20 6 0.5712 -11.4925 0.7359 21 6 1.3792 -10.2694 1.1096 22 8 1.6183 -9.9149 2.2446 23 1 -0.4849 0.8401 0.0004 24 1 0.3534 -2.3906 -0.0005 25 1 0.6166 -4.9209 -0.8897 26 1 0.6174 -4.9205 0.8903 27 1 3.2210 -8.3774 0.8890 28 1 3.2208 -8.3772 -0.8910 29 1 2.1609 -10.9020 -1.6433 30 1 0.9634 -9.6075 -1.9392 31 1 -0.7632 -10.7855 -0.8468 32 1 0.2335 -12.2072 -1.3039 33 1 -0.3318 -11.5535 1.3434 34 1 1.1709 -12.3954 0.8506 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322590399.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:09 Heat of formation + Delta-G solvation = -149.285365 kcal Electronic energy + Delta-G solvation = -20062.552736 eV Core-core repulsion = 16574.971979 eV Total energy + Delta-G solvation = -3487.580757 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.90634 -39.89842 -38.11832 -36.66508 -36.05704 -34.00256 -33.25866 -31.38489 -29.08929 -27.85934 -27.40083 -24.58103 -22.31422 -21.54830 -19.64507 -19.51016 -18.08766 -17.88282 -17.09278 -16.85233 -16.42854 -15.95648 -15.60374 -15.24345 -14.51301 -14.22943 -14.01768 -13.94365 -13.80611 -13.40279 -12.97064 -12.82148 -12.62208 -12.06168 -11.98495 -11.78832 -11.62041 -11.36024 -11.11231 -10.60997 -10.48910 -10.42819 -10.29317 -10.06637 -9.59687 -9.12497 -8.52125 -8.08485 -6.49939 -3.92112 2.10366 2.25860 2.53993 3.00873 3.15594 3.22892 3.28042 3.73573 4.02959 4.11150 4.14697 4.49316 4.61642 4.70301 4.84428 5.04354 5.07888 5.14959 5.16163 5.22190 5.37430 5.47561 5.52252 5.66765 5.69248 6.02451 6.08769 6.59506 6.76501 7.47569 7.77859 7.90531 7.96038 8.48380 9.06828 9.39075 9.89028 10.67252 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.051642 B = 0.003114 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.066419 B = 8988.418275 C = 9089.066771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.025 3.975 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.304 4.304 8 H 0.106 0.894 9 N -0.552 5.552 10 C 0.438 3.562 11 O -0.576 6.576 12 C 0.062 3.938 13 O -0.325 6.325 14 C 0.438 3.562 15 O -0.506 6.506 16 C 0.137 3.863 17 N -0.609 5.609 18 C 0.102 3.898 19 C -0.130 4.130 20 C -0.151 4.151 21 C 0.522 3.478 22 O -0.525 6.525 23 H 0.274 0.726 24 H 0.395 0.605 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.549 -21.531 -4.166 21.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.177 4.177 3 Si 0.762 3.238 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.433 4.433 8 H 0.124 0.876 9 N -0.189 5.189 10 C 0.223 3.777 11 O -0.460 6.460 12 C -0.016 4.016 13 O -0.239 6.239 14 C 0.279 3.721 15 O -0.394 6.394 16 C 0.013 3.987 17 N -0.344 5.344 18 C -0.020 4.020 19 C -0.168 4.168 20 C -0.191 4.191 21 C 0.310 3.690 22 O -0.400 6.400 23 H 0.084 0.916 24 H 0.228 0.772 25 H 0.104 0.896 26 H 0.104 0.896 27 H 0.145 0.855 28 H 0.144 0.856 29 H 0.095 0.905 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.067 -21.115 -3.556 21.413 hybrid contribution -0.523 1.012 -0.092 1.143 sum -0.590 -20.103 -3.648 20.440 Atomic orbital electron populations 1.69610 1.06015 1.28601 1.49577 1.25316 0.95688 0.99878 0.96847 0.85850 0.78747 0.80035 0.79208 1.19739 1.20861 1.19730 1.19687 0.93471 0.81769 1.48329 0.87639 1.41698 1.09365 1.04082 1.63803 1.19310 0.88333 0.84055 0.86000 1.90559 1.13390 1.86783 1.55273 1.22746 0.90846 0.84536 1.03435 1.86534 1.40422 1.14065 1.82851 1.24329 0.89300 0.85427 0.73032 1.90647 1.16785 1.86751 1.45265 1.20747 0.91343 0.79124 1.07486 1.47989 1.54388 1.23833 1.08207 1.22153 0.97191 0.95516 0.87165 1.22590 0.99125 1.00181 0.94916 1.22297 1.01634 0.97224 0.97987 1.21080 0.78821 0.84963 0.84142 1.90757 1.57901 1.70291 1.21074 0.91563 0.77162 0.89607 0.89589 0.85497 0.85619 0.90489 0.90060 0.89641 0.88981 0.87807 0.87641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.26 13.05 55.50 0.72 -23.53 16 2 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 3 Si 0.94 20.82 29.55 -169.99 -5.02 15.80 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.59 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 7 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 8 H 0.11 3.05 7.16 -52.48 -0.38 2.67 16 9 N -0.55 -14.14 5.29 -10.96 -0.06 -14.20 16 10 C 0.44 10.73 7.86 -10.98 -0.09 10.64 16 11 O -0.58 -16.15 16.08 -14.11 -0.23 -16.38 16 12 C 0.06 1.21 5.94 36.01 0.21 1.43 16 13 O -0.32 -6.10 9.75 -45.89 -0.45 -6.55 16 14 C 0.44 6.98 8.03 36.01 0.29 7.27 16 15 O -0.51 -9.09 16.18 -18.75 -0.30 -9.40 16 16 C 0.14 1.56 6.53 -5.19 -0.03 1.53 16 17 N -0.61 -6.52 2.43 -173.72 -0.42 -6.94 16 18 C 0.10 0.70 7.34 -3.12 -0.02 0.67 16 19 C -0.13 -0.72 7.18 -25.10 -0.18 -0.90 16 20 C -0.15 -1.12 6.86 -26.74 -0.18 -1.30 16 21 C 0.52 6.46 8.03 -10.77 -0.09 6.37 16 22 O -0.52 -8.89 17.60 5.55 0.10 -8.79 16 23 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 24 H 0.39 9.60 7.90 -40.82 -0.32 9.27 16 25 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 26 H 0.09 1.58 8.13 -51.93 -0.42 1.16 16 27 H 0.13 1.44 7.93 -51.93 -0.41 1.02 16 28 H 0.13 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.11 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 308.77 15.07 4.65 4.65 Total: -1.00 -36.30 308.77 -5.39 -41.69 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -4.05 Total: 5.96 kcal Atomic # 6 Polarization: 18.02 SS G_CDS: -0.33 Total: 17.69 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: 0.24 Total: -44.68 kcal Atomic # 8 Polarization: -40.23 SS G_CDS: -0.88 Total: -41.11 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -36.30 -5.39 -41.69 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322590399.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.596 kcal (2) G-P(sol) polarization free energy of solvation -36.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds