Wall clock time and date at job start Mon Mar 30 2020 01:32:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86801 * 120.00292 * 2 1 4 4 H 1.48504 * 109.46935 * 240.00476 * 3 2 1 5 5 H 1.48502 * 109.46673 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47302 * 120.00359 * 3 2 1 7 7 C 1.38949 * 119.99871 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00049 * 179.97438 * 7 2 1 9 9 N 1.37100 * 120.00095 * 359.97438 * 7 2 1 10 10 C 1.34780 * 120.00001 * 180.02562 * 9 7 2 11 11 O 1.21292 * 120.00229 * 359.97438 * 10 9 7 12 12 C 1.50705 * 119.99646 * 179.97438 * 10 9 7 13 13 O 1.45196 * 109.46837 * 179.97438 * 12 10 9 14 14 C 1.34225 * 116.99947 * 180.02562 * 13 12 10 15 15 O 1.20820 * 120.00210 * 359.97438 * 14 13 12 16 16 C 1.50700 * 120.00005 * 180.02562 * 14 13 12 17 17 N 1.46498 * 109.47501 * 179.97438 * 16 14 13 18 18 C 1.46768 * 124.34879 * 89.99466 * 17 16 14 19 19 C 1.54480 * 105.55098 * 197.08340 * 18 17 16 20 20 C 1.54631 * 101.76472 * 334.54015 * 19 18 17 21 21 C 1.34621 * 124.47196 * 270.02709 * 17 16 14 22 22 O 1.21286 * 124.90539 * 359.55259 * 21 17 16 23 23 H 0.97004 * 119.99471 * 359.97438 * 1 2 3 24 24 H 0.96996 * 119.99832 * 0.02562 * 9 7 2 25 25 H 1.09003 * 109.47071 * 59.99766 * 12 10 9 26 26 H 1.08991 * 109.46952 * 299.99624 * 12 10 9 27 27 H 1.09002 * 109.47506 * 59.99681 * 16 14 13 28 28 H 1.08998 * 109.47494 * 299.99500 * 16 14 13 29 29 H 1.09002 * 110.24468 * 78.03845 * 18 17 16 30 30 H 1.09002 * 110.24463 * 316.12602 * 18 17 16 31 31 H 1.08995 * 110.97082 * 92.66028 * 19 18 17 32 32 H 1.09001 * 110.96924 * 216.42557 * 19 18 17 33 33 H 1.09000 * 110.48694 * 143.47575 * 20 19 18 34 34 H 1.08994 * 110.49106 * 266.12244 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.1019 1.6963 -1.2126 5 1 1.2832 2.7464 0.0006 6 1 3.1020 1.6963 1.2124 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2101 -3.5580 -0.0010 12 6 1.2436 -4.8630 0.0000 13 8 2.1871 -5.9666 -0.0007 14 6 1.6741 -7.2069 -0.0008 15 8 0.4763 -7.3653 0.0001 16 6 2.5920 -8.4021 -0.0010 17 7 1.7942 -9.6308 -0.0005 18 6 1.3426 -10.3254 -1.2120 19 6 0.2093 -11.2683 -0.7506 20 6 0.5712 -11.4925 0.7359 21 6 1.3792 -10.2694 1.1096 22 8 1.6183 -9.9149 2.2446 23 1 -0.4849 0.8401 0.0004 24 1 0.3534 -2.3906 -0.0005 25 1 0.6166 -4.9209 -0.8897 26 1 0.6174 -4.9205 0.8903 27 1 3.2210 -8.3774 0.8890 28 1 3.2208 -8.3772 -0.8910 29 1 2.1609 -10.9020 -1.6433 30 1 0.9634 -9.6075 -1.9392 31 1 -0.7632 -10.7855 -0.8468 32 1 0.2335 -12.2072 -1.3039 33 1 -0.3318 -11.5535 1.3434 34 1 1.1709 -12.3954 0.8506 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322590399.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:09 Heat of formation + Delta-G solvation = -175.163902 kcal Electronic energy + Delta-G solvation = -20063.674914 eV Core-core repulsion = 16574.971979 eV Total energy + Delta-G solvation = -3488.702935 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.99222 -41.06649 -40.01662 -37.75859 -37.34387 -36.06388 -34.03603 -33.44524 -30.51083 -28.62156 -28.48887 -26.52373 -23.02269 -22.63953 -21.47838 -20.50583 -20.10438 -19.14449 -18.25441 -17.97138 -17.58768 -17.44026 -16.96645 -16.50397 -16.19302 -15.80097 -15.69568 -14.82672 -14.72083 -14.66821 -14.17965 -13.93299 -13.63026 -13.55777 -13.39011 -13.14651 -12.94294 -12.51262 -12.31500 -12.13993 -12.01021 -11.93682 -11.76961 -11.59626 -10.99406 -10.56445 -10.15009 -9.96305 -8.54652 -6.05846 0.97135 1.03874 1.36043 1.41657 1.52633 1.63027 1.83660 1.99210 2.29344 2.99805 3.10596 3.38251 3.57764 3.63620 3.98714 4.02968 4.07721 4.11206 4.16940 4.19667 4.26325 4.66616 4.70435 4.88212 5.09625 5.20539 5.24259 5.32881 5.34506 5.85820 5.97221 6.41188 6.54097 6.99562 7.00119 7.36099 7.89331 8.62210 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.051642 B = 0.003114 C = 0.003080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 542.066419 B = 8988.418275 C = 9089.066771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.008 4.008 3 Si 0.999 3.001 4 H -0.268 1.268 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.341 4.341 8 H 0.086 0.914 9 N -0.557 5.557 10 C 0.436 3.564 11 O -0.616 6.616 12 C 0.073 3.927 13 O -0.342 6.342 14 C 0.438 3.562 15 O -0.529 6.529 16 C 0.138 3.862 17 N -0.610 5.610 18 C 0.094 3.906 19 C -0.121 4.121 20 C -0.144 4.144 21 C 0.504 3.496 22 O -0.585 6.585 23 H 0.281 0.719 24 H 0.399 0.601 25 H 0.109 0.891 26 H 0.097 0.903 27 H 0.125 0.875 28 H 0.167 0.833 29 H 0.111 0.889 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.129 0.871 33 H 0.103 0.897 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.719 -22.741 -5.452 23.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.209 4.209 3 Si 0.822 3.178 4 H -0.193 1.193 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.470 4.470 8 H 0.104 0.896 9 N -0.194 5.194 10 C 0.223 3.777 11 O -0.503 6.503 12 C -0.005 4.005 13 O -0.256 6.256 14 C 0.280 3.720 15 O -0.418 6.418 16 C 0.014 3.986 17 N -0.344 5.344 18 C -0.027 4.027 19 C -0.158 4.158 20 C -0.184 4.184 21 C 0.294 3.706 22 O -0.465 6.465 23 H 0.091 0.909 24 H 0.234 0.766 25 H 0.126 0.874 26 H 0.115 0.885 27 H 0.143 0.857 28 H 0.185 0.815 29 H 0.129 0.871 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.148 0.852 33 H 0.121 0.879 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.277 -22.357 -4.887 22.887 hybrid contribution -0.500 1.330 0.287 1.450 sum -0.776 -21.027 -4.599 21.538 Atomic orbital electron populations 1.69672 1.07020 1.29872 1.48994 1.26158 0.96594 1.02667 0.95509 0.84897 0.77743 0.75960 0.79204 1.19270 1.19325 1.19544 1.19718 0.93014 0.83356 1.50886 0.89647 1.41742 1.09541 1.04212 1.63929 1.20063 0.88088 0.85322 0.84268 1.90522 1.15344 1.87669 1.56792 1.22483 0.90236 0.82717 1.05014 1.86547 1.40734 1.14943 1.83391 1.25305 0.89790 0.85186 0.71686 1.90630 1.18005 1.86768 1.46444 1.20988 0.90752 0.77570 1.09305 1.48283 1.53639 1.23081 1.09373 1.22518 0.98862 0.95745 0.85554 1.22648 0.98028 1.01470 0.93664 1.22370 1.01099 0.95742 0.99202 1.22077 0.78565 0.86306 0.83614 1.90714 1.60170 1.72162 1.23415 0.90897 0.76614 0.87357 0.88470 0.85695 0.81534 0.87087 0.90287 0.90657 0.85241 0.87865 0.84955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.08 13.05 21.66 0.28 -48.80 16 2 C -0.01 -0.45 5.50 84.93 0.47 0.02 16 3 Si 1.00 42.23 29.55 68.60 2.03 44.26 16 4 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 5 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 6 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 7 C -0.34 -19.33 9.68 84.04 0.81 -18.52 16 8 H 0.09 5.11 7.16 -2.91 -0.02 5.08 16 9 N -0.56 -29.07 5.29 -306.97 -1.62 -30.69 16 10 C 0.44 21.73 7.86 87.66 0.69 22.42 16 11 O -0.62 -35.47 16.08 15.73 0.25 -35.22 16 12 C 0.07 2.84 5.94 71.24 0.42 3.27 16 13 O -0.34 -12.78 9.75 -45.01 -0.44 -13.22 16 14 C 0.44 13.71 8.03 71.24 0.57 14.28 16 15 O -0.53 -18.76 16.18 21.98 0.36 -18.41 16 16 C 0.14 2.97 6.53 85.63 0.56 3.53 16 17 N -0.61 -12.06 2.43 -822.00 -2.00 -14.05 16 18 C 0.09 0.98 7.34 86.83 0.64 1.62 16 19 C -0.12 -0.93 7.18 31.65 0.23 -0.71 16 20 C -0.14 -1.82 6.86 30.59 0.21 -1.61 16 21 C 0.50 12.13 8.03 87.87 0.71 12.83 16 22 O -0.58 -20.33 17.60 -3.05 -0.05 -20.38 16 23 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 24 H 0.40 19.70 7.90 -92.71 -0.73 18.96 16 25 H 0.11 3.72 8.13 -2.39 -0.02 3.70 16 26 H 0.10 3.57 8.13 -2.39 -0.02 3.55 16 27 H 0.13 2.79 7.93 -2.39 -0.02 2.77 16 28 H 0.17 2.16 8.14 -2.39 -0.02 2.14 16 29 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.13 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.13 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -80.92 308.77 4.52 -76.40 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 0.40 Total: 22.98 kcal Atomic # 6 Polarization: 31.82 SS G_CDS: 5.30 Total: 37.13 kcal Atomic # 7 Polarization: -90.20 SS G_CDS: -3.34 Total: -93.54 kcal Atomic # 8 Polarization: -87.35 SS G_CDS: 0.12 Total: -87.23 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -80.92 4.52 -76.40 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322590399.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.763 kcal (2) G-P(sol) polarization free energy of solvation -80.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -179.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds