Wall clock time and date at job start Mon Mar 30 2020 01:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46502 * 119.99748 * 2 1 4 4 C 1.34774 * 120.00408 * 179.97438 * 2 1 3 5 5 O 1.21284 * 119.99911 * 0.02562 * 4 2 1 6 6 C 1.50698 * 120.00197 * 180.02562 * 4 2 1 7 7 S 1.81001 * 109.47052 * 179.97438 * 6 4 2 8 8 C 1.76202 * 99.99784 * 179.97438 * 7 6 4 9 9 N 1.32388 * 126.26021 * 359.97438 * 8 7 6 10 10 N 1.28516 * 110.20609 * 180.02562 * 9 8 7 11 11 C 1.33098 * 109.74302 * 0.02562 * 10 9 8 12 12 C 1.39776 * 126.56257 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99778 * 186.09356 * 12 11 10 14 14 C 1.40085 * 120.00068 * 6.08606 * 12 11 10 15 15 N 1.30808 * 119.99942 * 184.12744 * 14 12 11 16 16 Si 1.86799 * 119.99669 * 4.13543 * 14 12 11 17 17 H 1.48509 * 109.46950 * 179.97438 * 16 14 12 18 18 H 1.48495 * 109.47355 * 299.99259 * 16 14 12 19 19 H 1.48501 * 109.47215 * 59.99928 * 16 14 12 20 20 N 1.36669 * 126.25987 * 180.30691 * 8 7 6 21 21 C 1.46505 * 127.15024 * 359.97438 * 20 8 7 22 22 H 1.08995 * 109.47069 * 270.00401 * 1 2 3 23 23 H 1.08994 * 109.47050 * 30.00711 * 1 2 3 24 24 H 1.09000 * 109.46243 * 150.00049 * 1 2 3 25 25 H 1.09003 * 109.46486 * 269.99945 * 3 2 1 26 26 H 1.09004 * 109.47214 * 29.99267 * 3 2 1 27 27 H 1.08993 * 109.47363 * 149.99835 * 3 2 1 28 28 H 1.09003 * 109.46642 * 59.99892 * 6 4 2 29 29 H 1.08993 * 109.47041 * 300.00220 * 6 4 2 30 30 H 0.97000 * 120.00392 * 354.84969 * 15 14 12 31 31 H 1.08991 * 109.47295 * 270.14314 * 21 20 8 32 32 H 1.08996 * 109.46934 * 30.14387 * 21 20 8 33 33 H 1.09000 * 109.46691 * 150.13746 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1390 -1.1671 0.0005 5 8 1.5327 -2.2175 0.0005 6 6 3.6460 -1.1671 0.0011 7 16 4.2494 -2.8736 0.0025 8 6 5.9874 -2.5835 0.0022 9 7 6.5840 -1.4017 0.0007 10 7 7.8607 -1.5489 0.0004 11 6 8.1638 -2.8449 0.0011 12 6 9.4466 -3.4000 0.0006 13 1 9.5727 -4.4681 -0.0981 14 6 10.5686 -2.5710 0.1278 15 7 11.7707 -3.0803 0.0463 16 14 10.3480 -0.7383 0.4139 17 1 11.6799 -0.0889 0.5133 18 1 9.5923 -0.1477 -0.7198 19 1 9.5966 -0.5213 1.6763 20 7 6.9661 -3.5374 -0.0030 21 6 6.7846 -4.9912 -0.0088 22 1 -0.3633 0.0001 1.0276 23 1 -0.3633 0.8899 -0.5139 24 1 -0.3632 -0.8900 -0.5139 25 1 2.3791 1.5833 -1.0277 26 1 1.6084 2.0285 0.5137 27 1 3.1499 1.1385 0.5138 28 1 4.0089 -0.6530 0.8912 29 1 4.0096 -0.6534 -0.8888 30 1 11.8867 -4.0405 -0.0272 31 1 6.7383 -5.3556 1.0174 32 1 5.8571 -5.2395 -0.5247 33 1 7.6233 -5.4599 -0.5235 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323866074.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:42 Heat of formation + Delta-G solvation = 28.660946 kcal Electronic energy + Delta-G solvation = -18073.861848 eV Core-core repulsion = 15069.043043 eV Total energy + Delta-G solvation = -3004.818804 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.94899 -39.87023 -35.72220 -33.95611 -33.59325 -30.79575 -29.95274 -27.84654 -26.75097 -25.85670 -25.20414 -21.47622 -20.40372 -19.49842 -18.21844 -17.24034 -16.92220 -16.22246 -15.84819 -15.19154 -15.06015 -13.99145 -13.98071 -13.75106 -13.51415 -13.06876 -12.93300 -12.82295 -12.64646 -12.59015 -12.37480 -12.23031 -11.93149 -11.17042 -10.88974 -10.36575 -10.06678 -9.90561 -9.59858 -9.42124 -9.11668 -8.94302 -8.69540 -8.42180 -7.44641 -7.08861 -4.86064 1.61690 2.44206 2.54495 2.88515 2.90150 3.54704 3.57394 3.85540 4.02600 4.12039 4.32269 4.39010 4.84872 5.03175 5.07062 5.08788 5.13526 5.38544 5.39483 5.42798 5.54011 5.56301 5.73975 5.92468 6.17343 6.34760 6.62544 7.02037 7.10571 7.38111 7.50744 7.92588 8.02899 8.33096 8.53725 9.94036 10.07828 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.032155 B = 0.004835 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.561783 B = 5790.310700 C = 6622.620307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.620 5.620 3 C 0.073 3.927 4 C 0.533 3.467 5 O -0.526 6.526 6 C -0.134 4.134 7 S 0.028 5.972 8 C 0.053 3.947 9 N -0.274 5.274 10 N -0.416 5.416 11 C 0.345 3.655 12 C -0.492 4.492 13 H 0.083 0.917 14 C 0.064 3.936 15 N -0.807 5.807 16 Si 1.113 2.887 17 H -0.311 1.311 18 H -0.261 1.261 19 H -0.281 1.281 20 N -0.511 5.511 21 C 0.100 3.900 22 H 0.055 0.945 23 H 0.070 0.930 24 H 0.077 0.923 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.080 0.920 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.283 0.717 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.410 4.496 0.050 17.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.356 5.356 3 C -0.070 4.070 4 C 0.320 3.680 5 O -0.402 6.402 6 C -0.285 4.285 7 S 0.254 5.746 8 C -0.321 4.321 9 N -0.118 5.118 10 N -0.266 5.266 11 C 0.102 3.898 12 C -0.533 4.533 13 H 0.101 0.899 14 C -0.158 4.158 15 N -0.431 5.431 16 Si 0.942 3.058 17 H -0.241 1.241 18 H -0.186 1.186 19 H -0.207 1.207 20 N -0.211 5.211 21 C -0.044 4.044 22 H 0.074 0.926 23 H 0.089 0.911 24 H 0.096 0.904 25 H 0.080 0.920 26 H 0.093 0.907 27 H 0.099 0.901 28 H 0.139 0.861 29 H 0.138 0.862 30 H 0.095 0.905 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -16.337 5.757 0.174 17.323 hybrid contribution -0.110 -1.918 -0.181 1.930 sum -16.447 3.839 -0.007 16.889 Atomic orbital electron populations 1.21649 0.78811 1.03205 1.01929 1.47640 1.07150 1.06312 1.74453 1.21928 0.97715 0.84830 1.02513 1.19903 0.88683 0.83536 0.75882 1.90721 1.69784 1.30627 1.49067 1.23472 0.94696 1.01494 1.08863 1.85236 0.88869 1.05232 1.95287 1.25798 0.95923 0.89267 1.21130 1.74220 1.01937 1.19236 1.16417 1.73953 1.04297 1.12603 1.35755 1.21718 0.86829 0.87346 0.93881 1.19408 0.87931 0.96831 1.49141 0.89860 1.27360 0.90303 1.09424 0.88757 1.70671 1.23532 1.16526 1.32404 0.82690 0.72109 0.70634 0.80360 1.24139 1.18616 1.20731 1.45813 1.05171 1.06098 1.64067 1.21565 1.02539 0.78157 1.02138 0.92645 0.91129 0.90410 0.92032 0.90749 0.90140 0.86137 0.86168 0.90525 0.92036 0.91039 0.90215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.73 10.44 59.85 0.62 1.35 16 2 N -0.62 -6.59 3.27 -189.51 -0.62 -7.21 16 3 C 0.07 0.56 10.24 59.85 0.61 1.17 16 4 C 0.53 7.54 7.69 -10.99 -0.08 7.46 16 5 O -0.53 -9.05 15.44 5.55 0.09 -8.96 16 6 C -0.13 -1.99 4.26 36.00 0.15 -1.84 16 7 S 0.03 0.51 20.92 -107.50 -2.25 -1.74 16 8 C 0.05 1.19 8.09 -87.28 -0.71 0.49 16 9 N -0.27 -6.88 11.62 30.89 0.36 -6.52 16 10 N -0.42 -11.43 7.52 31.26 0.23 -11.20 16 11 C 0.35 9.21 7.27 -154.81 -1.13 8.09 16 12 C -0.49 -13.22 9.50 -38.31 -0.36 -13.59 16 13 H 0.08 2.17 7.46 -52.49 -0.39 1.78 16 14 C 0.06 1.73 5.52 -17.29 -0.10 1.64 16 15 N -0.81 -21.65 13.65 55.56 0.76 -20.89 16 16 Si 1.11 27.80 25.90 -169.99 -4.40 23.40 16 17 H -0.31 -7.46 7.11 56.52 0.40 -7.06 16 18 H -0.26 -6.68 6.76 56.52 0.38 -6.29 16 19 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 20 N -0.51 -11.92 3.26 -123.18 -0.40 -12.32 16 21 C 0.10 1.81 10.89 59.85 0.65 2.46 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.07 0.40 8.07 -51.93 -0.42 -0.01 16 24 H 0.08 0.76 7.42 -51.93 -0.39 0.37 16 25 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.40 8.07 -51.93 -0.42 -0.02 16 27 H 0.08 0.65 6.44 -51.93 -0.33 0.31 16 28 H 0.12 1.73 7.40 -51.91 -0.38 1.34 16 29 H 0.12 1.73 8.11 -51.92 -0.42 1.31 16 30 H 0.28 7.22 8.72 -40.82 -0.36 6.87 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.13 7.85 -51.93 -0.41 0.72 16 33 H 0.08 1.38 7.48 -51.93 -0.39 0.99 16 LS Contribution 297.90 15.07 4.49 4.49 Total: -1.00 -33.49 297.90 -6.07 -39.55 By element: Atomic # 1 Polarization: -1.85 SS G_CDS: -3.99 Total: -5.84 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -0.33 Total: 7.23 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: 0.33 Total: -58.14 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 27.80 SS G_CDS: -4.40 Total: 23.40 kcal Atomic # 16 Polarization: 0.51 SS G_CDS: -2.25 Total: -1.74 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -33.49 -6.07 -39.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323866074.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.216 kcal (2) G-P(sol) polarization free energy of solvation -33.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds