Wall clock time and date at job start Mon Mar 30 2020 01:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46502 * 119.99748 * 2 1 4 4 C 1.34774 * 120.00408 * 179.97438 * 2 1 3 5 5 O 1.21284 * 119.99911 * 0.02562 * 4 2 1 6 6 C 1.50698 * 120.00197 * 180.02562 * 4 2 1 7 7 S 1.81001 * 109.47052 * 179.97438 * 6 4 2 8 8 C 1.76202 * 99.99784 * 179.97438 * 7 6 4 9 9 N 1.32388 * 126.26021 * 359.97438 * 8 7 6 10 10 N 1.28516 * 110.20609 * 180.02562 * 9 8 7 11 11 C 1.33098 * 109.74302 * 0.02562 * 10 9 8 12 12 C 1.39776 * 126.56257 * 179.97438 * 11 10 9 13 13 H 1.07999 * 119.99778 * 186.09356 * 12 11 10 14 14 C 1.40085 * 120.00068 * 6.08606 * 12 11 10 15 15 N 1.30808 * 119.99942 * 184.12744 * 14 12 11 16 16 Si 1.86799 * 119.99669 * 4.13543 * 14 12 11 17 17 H 1.48509 * 109.46950 * 179.97438 * 16 14 12 18 18 H 1.48495 * 109.47355 * 299.99259 * 16 14 12 19 19 H 1.48501 * 109.47215 * 59.99928 * 16 14 12 20 20 N 1.36669 * 126.25987 * 180.30691 * 8 7 6 21 21 C 1.46505 * 127.15024 * 359.97438 * 20 8 7 22 22 H 1.08995 * 109.47069 * 270.00401 * 1 2 3 23 23 H 1.08994 * 109.47050 * 30.00711 * 1 2 3 24 24 H 1.09000 * 109.46243 * 150.00049 * 1 2 3 25 25 H 1.09003 * 109.46486 * 269.99945 * 3 2 1 26 26 H 1.09004 * 109.47214 * 29.99267 * 3 2 1 27 27 H 1.08993 * 109.47363 * 149.99835 * 3 2 1 28 28 H 1.09003 * 109.46642 * 59.99892 * 6 4 2 29 29 H 1.08993 * 109.47041 * 300.00220 * 6 4 2 30 30 H 0.97000 * 120.00392 * 354.84969 * 15 14 12 31 31 H 1.08991 * 109.47295 * 270.14314 * 21 20 8 32 32 H 1.08996 * 109.46934 * 30.14387 * 21 20 8 33 33 H 1.09000 * 109.46691 * 150.13746 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1390 -1.1671 0.0005 5 8 1.5327 -2.2175 0.0005 6 6 3.6460 -1.1671 0.0011 7 16 4.2494 -2.8736 0.0025 8 6 5.9874 -2.5835 0.0022 9 7 6.5840 -1.4017 0.0007 10 7 7.8607 -1.5489 0.0004 11 6 8.1638 -2.8449 0.0011 12 6 9.4466 -3.4000 0.0006 13 1 9.5727 -4.4681 -0.0981 14 6 10.5686 -2.5710 0.1278 15 7 11.7707 -3.0803 0.0463 16 14 10.3480 -0.7383 0.4139 17 1 11.6799 -0.0889 0.5133 18 1 9.5923 -0.1477 -0.7198 19 1 9.5966 -0.5213 1.6763 20 7 6.9661 -3.5374 -0.0030 21 6 6.7846 -4.9912 -0.0088 22 1 -0.3633 0.0001 1.0276 23 1 -0.3633 0.8899 -0.5139 24 1 -0.3632 -0.8900 -0.5139 25 1 2.3791 1.5833 -1.0277 26 1 1.6084 2.0285 0.5137 27 1 3.1499 1.1385 0.5138 28 1 4.0089 -0.6530 0.8912 29 1 4.0096 -0.6534 -0.8888 30 1 11.8867 -4.0405 -0.0272 31 1 6.7383 -5.3556 1.0174 32 1 5.8571 -5.2395 -0.5247 33 1 7.6233 -5.4599 -0.5235 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323866074.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:42 Heat of formation + Delta-G solvation = 6.628988 kcal Electronic energy + Delta-G solvation = -18074.817225 eV Core-core repulsion = 15069.043043 eV Total energy + Delta-G solvation = -3005.774182 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.84779 -40.91189 -36.66863 -35.93424 -35.40385 -32.17044 -31.61982 -28.63885 -28.37100 -27.28384 -26.51104 -23.34477 -22.23590 -20.57026 -20.18810 -18.52399 -18.17565 -17.24242 -17.16806 -16.82383 -16.70297 -15.81204 -15.52137 -14.93793 -14.93041 -14.62508 -14.25230 -14.18645 -13.75290 -13.54650 -13.44331 -13.33774 -13.10239 -12.90891 -12.84025 -11.97879 -11.74942 -11.55259 -11.40778 -11.17570 -10.92644 -10.57575 -10.36713 -9.78925 -9.48884 -8.72491 -6.86138 0.14678 0.98014 1.04077 1.35241 1.55639 1.60704 1.95126 1.99344 2.12654 2.21376 2.42859 3.04670 3.32148 3.93078 3.93702 4.22017 4.33107 4.34166 4.41958 4.46532 4.49688 4.55554 4.69177 4.76269 4.91714 4.94103 5.23140 5.37290 5.39973 5.67450 6.00438 6.11024 6.39245 6.56541 6.89569 7.92651 8.13651 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.032155 B = 0.004835 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.561783 B = 5790.310700 C = 6622.620307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.612 5.612 3 C 0.066 3.934 4 C 0.532 3.468 5 O -0.564 6.564 6 C -0.130 4.130 7 S 0.049 5.951 8 C 0.070 3.930 9 N -0.304 5.304 10 N -0.444 5.444 11 C 0.326 3.674 12 C -0.510 4.510 13 H 0.083 0.917 14 C 0.041 3.959 15 N -0.823 5.823 16 Si 1.146 2.854 17 H -0.298 1.298 18 H -0.274 1.274 19 H -0.293 1.293 20 N -0.514 5.514 21 C 0.092 3.908 22 H 0.064 0.936 23 H 0.103 0.897 24 H 0.061 0.939 25 H 0.073 0.927 26 H 0.103 0.897 27 H 0.075 0.925 28 H 0.128 0.872 29 H 0.127 0.873 30 H 0.286 0.714 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.454 5.257 0.100 19.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.345 5.345 3 C -0.076 4.076 4 C 0.318 3.682 5 O -0.444 6.444 6 C -0.281 4.281 7 S 0.274 5.726 8 C -0.305 4.305 9 N -0.147 5.147 10 N -0.293 5.293 11 C 0.079 3.921 12 C -0.551 4.551 13 H 0.101 0.899 14 C -0.178 4.178 15 N -0.448 5.448 16 Si 0.975 3.025 17 H -0.227 1.227 18 H -0.201 1.201 19 H -0.220 1.220 20 N -0.214 5.214 21 C -0.051 4.051 22 H 0.083 0.917 23 H 0.122 0.878 24 H 0.080 0.920 25 H 0.092 0.908 26 H 0.121 0.879 27 H 0.093 0.907 28 H 0.146 0.854 29 H 0.145 0.855 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.115 0.885 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -18.382 6.544 0.224 19.513 hybrid contribution 0.221 -2.132 -0.200 2.153 sum -18.161 4.412 0.024 18.689 Atomic orbital electron populations 1.21853 0.77226 1.04071 1.02826 1.47778 1.08250 1.06167 1.72302 1.22183 0.97787 0.83969 1.03693 1.19746 0.88080 0.84194 0.76133 1.90707 1.70166 1.32086 1.51456 1.23563 0.95659 0.99263 1.09632 1.85311 0.84798 1.07926 1.94574 1.26692 0.98123 0.88628 1.17009 1.74155 1.01210 1.20391 1.18922 1.73849 1.05700 1.13431 1.36334 1.21785 0.87801 0.87740 0.94753 1.19423 0.88342 0.96844 1.50493 0.89938 1.27828 0.90452 1.10800 0.88761 1.70668 1.23566 1.16806 1.33811 0.82211 0.72055 0.69260 0.78999 1.22688 1.20096 1.22012 1.46169 1.04413 1.08118 1.62669 1.21913 1.04050 0.75299 1.03805 0.91724 0.87818 0.92002 0.90845 0.87871 0.90663 0.85386 0.85492 0.90302 0.90262 0.88512 0.89714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.15 10.44 127.77 1.33 2.48 16 2 N -0.61 -11.35 3.27 -871.89 -2.85 -14.20 16 3 C 0.07 0.79 10.24 127.77 1.31 2.10 16 4 C 0.53 14.05 7.69 87.66 0.67 14.73 16 5 O -0.56 -18.68 15.44 -3.04 -0.05 -18.72 16 6 C -0.13 -3.62 4.26 71.24 0.30 -3.32 16 7 S 0.05 1.68 20.92 -56.49 -1.18 0.50 16 8 C 0.07 3.10 8.09 179.18 1.45 4.55 16 9 N -0.30 -15.06 11.62 -56.17 -0.65 -15.72 16 10 N -0.44 -24.45 7.52 -55.02 -0.41 -24.86 16 11 C 0.33 17.37 7.27 133.23 0.97 18.34 16 12 C -0.51 -27.59 9.50 23.09 0.22 -27.37 16 13 H 0.08 4.34 7.46 -2.91 -0.02 4.32 16 14 C 0.04 2.25 5.52 85.29 0.47 2.72 16 15 N -0.82 -44.30 13.65 21.86 0.30 -44.01 16 16 Si 1.15 57.18 25.90 68.60 1.78 58.96 16 17 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 18 H -0.27 -14.18 6.76 99.48 0.67 -13.50 16 19 H -0.29 -15.00 7.11 99.48 0.71 -14.29 16 20 N -0.51 -23.43 3.26 -543.63 -1.77 -25.20 16 21 C 0.09 3.14 10.89 127.77 1.39 4.53 16 22 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 23 H 0.10 0.78 8.07 -2.39 -0.02 0.76 16 24 H 0.06 1.10 7.42 -2.39 -0.02 1.08 16 25 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.10 0.69 8.07 -2.39 -0.02 0.67 16 27 H 0.07 1.02 6.44 -2.39 -0.02 1.00 16 28 H 0.13 3.43 7.40 -2.39 -0.02 3.41 16 29 H 0.13 3.41 8.11 -2.40 -0.02 3.39 16 30 H 0.29 14.67 8.72 -92.71 -0.81 13.86 16 31 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.10 2.81 7.85 -2.39 -0.02 2.79 16 33 H 0.08 2.82 7.48 -2.39 -0.02 2.80 16 Total: -1.00 -71.78 297.90 4.32 -67.45 By element: Atomic # 1 Polarization: -4.01 SS G_CDS: 1.05 Total: -2.95 kcal Atomic # 6 Polarization: 10.64 SS G_CDS: 8.12 Total: 18.76 kcal Atomic # 7 Polarization: -118.60 SS G_CDS: -5.39 Total: -123.99 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.05 Total: -18.72 kcal Atomic # 14 Polarization: 57.18 SS G_CDS: 1.78 Total: 58.96 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -1.18 Total: 0.50 kcal Total: -71.78 4.32 -67.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323866074.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.084 kcal (2) G-P(sol) polarization free energy of solvation -71.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds