Wall clock time and date at job start Mon Mar 30 2020 01:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46662 * 2 1 4 4 N 1.46496 * 109.47378 * 120.01011 * 2 1 3 5 5 C 1.34774 * 119.99544 * 274.99692 * 4 2 1 6 6 O 1.21279 * 120.00472 * 0.02562 * 5 4 2 7 7 C 1.50706 * 120.00020 * 180.02562 * 5 4 2 8 8 S 1.81002 * 109.47200 * 179.97438 * 7 5 4 9 9 C 1.76198 * 99.99878 * 179.97438 * 8 7 5 10 10 H 1.08006 * 120.00031 * 359.97438 * 9 8 7 11 11 C 1.38801 * 120.00096 * 180.02562 * 9 8 7 12 12 N 1.31631 * 119.99946 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 119.99679 * 359.97438 * 11 9 8 14 14 H 1.48490 * 109.47080 * 90.00385 * 13 11 9 15 15 H 1.48506 * 109.46635 * 210.00589 * 13 11 9 16 16 H 1.48499 * 109.47138 * 329.99770 * 13 11 9 17 17 C 1.50705 * 109.46565 * 240.00494 * 2 1 3 18 18 N 1.33239 * 125.53177 * 285.02266 * 17 2 1 19 19 C 1.30832 * 109.82974 * 180.02562 * 18 17 2 20 20 N 1.34423 * 108.07765 * 359.97438 * 19 18 17 21 21 C 1.46499 * 126.82214 * 179.97438 * 20 19 18 22 22 N 1.30720 * 125.52249 * 104.71690 * 17 2 1 23 23 H 1.08997 * 109.46755 * 299.99136 * 1 2 3 24 24 H 1.08992 * 109.47534 * 59.99427 * 1 2 3 25 25 H 1.09005 * 109.46941 * 179.97438 * 1 2 3 26 26 H 0.96994 * 120.00700 * 94.99812 * 4 2 1 27 27 H 1.09001 * 109.46953 * 299.99667 * 7 5 4 28 28 H 1.09000 * 109.47318 * 59.99264 * 7 5 4 29 29 H 0.97001 * 119.99197 * 179.97438 * 12 11 9 30 30 H 1.08000 * 125.95583 * 179.97438 * 19 18 17 31 31 H 1.08998 * 109.47073 * 89.97915 * 21 20 19 32 32 H 1.09001 * 109.47287 * 209.97994 * 21 20 19 33 33 H 1.09002 * 109.47304 * 329.98555 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6908 1.1960 5 6 2.1472 -0.0185 2.3570 6 8 1.8583 1.1581 2.4118 7 6 2.6501 -0.7289 3.5873 8 16 2.7117 0.4341 4.9728 9 6 3.3147 -0.6313 6.2400 10 1 3.5233 -1.6679 6.0201 11 6 3.5207 -0.1386 7.5212 12 7 3.9717 -0.9344 8.4677 13 14 3.1593 1.6542 7.9017 14 1 1.7484 1.7916 8.3439 15 1 4.0645 2.1232 8.9815 16 1 3.3779 2.4729 6.6822 17 6 2.0322 -0.7103 -1.2306 18 7 2.0253 -2.0291 -1.4205 19 6 2.5320 -2.3114 -2.5932 20 7 2.8787 -1.1562 -3.1868 21 6 3.4846 -0.9968 -4.5110 22 7 2.5402 -0.1321 -2.2872 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8898 25 1 -0.3633 -1.0277 -0.0005 26 1 2.2491 -1.6319 1.1524 27 1 1.9779 -1.5512 3.8323 28 1 3.6494 -1.1208 3.3976 29 1 4.1160 -0.5899 9.3630 30 1 2.6511 -3.3000 -3.0113 31 1 2.6994 -0.8929 -5.2598 32 1 4.1135 -0.1065 -4.5180 33 1 4.0919 -1.8724 -4.7405 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325989372.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:23 Heat of formation + Delta-G solvation = 26.335388 kcal Electronic energy + Delta-G solvation = -17575.005948 eV Core-core repulsion = 14570.086300 eV Total energy + Delta-G solvation = -3004.919648 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -43.17810 -40.75548 -36.95749 -34.69145 -34.64250 -32.94047 -31.89838 -29.96503 -28.05710 -27.84002 -25.00931 -23.15849 -21.88069 -21.30532 -19.91178 -18.32892 -17.88424 -17.18479 -17.04613 -16.92241 -16.47775 -16.06742 -15.66201 -15.07325 -14.85851 -14.70848 -14.48998 -14.00762 -13.90498 -13.43861 -13.33651 -13.18550 -12.99897 -12.74215 -12.62734 -12.44228 -11.85641 -11.18769 -11.15783 -11.03814 -10.90830 -10.57621 -10.52869 -10.26816 -8.98440 -8.50385 -6.21112 0.53544 0.97744 1.33032 1.34201 1.48780 1.52381 1.56579 1.77400 2.24222 2.28234 2.72131 2.87839 2.94269 3.51594 3.78003 3.97499 4.08165 4.14926 4.24660 4.43734 4.47233 4.50700 4.63902 4.71443 4.83455 5.04998 5.20795 5.25035 5.32611 5.72162 5.91499 6.12945 6.39814 6.94680 6.99845 7.12577 8.62169 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.042507 B = 0.003461 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.564396 B = 8087.598707 C = 8314.496500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.242 3.758 3 H 0.090 0.910 4 N -0.704 5.704 5 C 0.542 3.458 6 O -0.555 6.555 7 C -0.110 4.110 8 S -0.170 6.170 9 C -0.529 4.529 10 H 0.062 0.938 11 C 0.045 3.955 12 N -0.918 5.918 13 Si 0.915 3.085 14 H -0.261 1.261 15 H -0.259 1.259 16 H -0.236 1.236 17 C 0.208 3.792 18 N -0.565 5.565 19 C 0.266 3.734 20 N -0.383 5.383 21 C 0.087 3.913 22 N -0.341 5.341 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.417 0.583 27 H 0.116 0.884 28 H 0.112 0.888 29 H 0.277 0.723 30 H 0.272 0.728 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.857 -4.384 -29.002 29.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.134 3.866 3 H 0.108 0.892 4 N -0.358 5.358 5 C 0.327 3.673 6 O -0.433 6.433 7 C -0.261 4.261 8 S 0.057 5.943 9 C -0.677 4.677 10 H 0.080 0.920 11 C -0.160 4.160 12 N -0.556 5.556 13 Si 0.737 3.263 14 H -0.186 1.186 15 H -0.183 1.183 16 H -0.160 1.160 17 C -0.075 4.075 18 N -0.293 5.293 19 C -0.029 4.029 20 N -0.173 5.173 21 C -0.053 4.053 22 N -0.171 5.171 23 H 0.081 0.919 24 H 0.096 0.904 25 H 0.091 0.909 26 H 0.254 0.746 27 H 0.134 0.866 28 H 0.130 0.870 29 H 0.086 0.914 30 H 0.287 0.713 31 H 0.114 0.886 32 H 0.105 0.895 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.245 -1.935 -28.729 28.977 hybrid contribution 0.621 -1.499 0.370 1.664 sum -2.624 -3.433 -28.360 28.687 Atomic orbital electron populations 1.22031 0.92007 1.03435 1.03002 1.18870 0.95208 0.94704 0.77769 0.89170 1.45695 1.67564 1.14791 1.07764 1.19943 0.76646 0.86547 0.84134 1.90689 1.50561 1.17085 1.84974 1.23246 1.06131 1.02394 0.94319 1.84666 1.86957 1.18165 1.04525 1.22472 1.50314 0.98212 0.96686 0.91971 1.25575 0.93227 1.02354 0.94876 1.70021 1.44611 1.37758 1.03203 0.85858 0.79609 0.80291 0.80565 1.18572 1.18347 1.16016 1.23927 0.98402 0.89599 0.95542 1.70284 1.25654 1.14157 1.19197 1.27017 0.92447 0.94982 0.88490 1.50709 1.45898 1.04142 1.16551 1.22400 0.99568 1.06593 0.76719 1.77969 1.22490 1.13947 1.02668 0.91913 0.90434 0.90893 0.74553 0.86562 0.87002 0.91357 0.71294 0.88569 0.89501 0.85039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.47 71.98 0.68 -2.79 16 2 C 0.24 6.55 3.12 44.25 0.14 6.68 16 3 H 0.09 2.79 7.58 -2.39 -0.02 2.77 16 4 N -0.70 -20.06 5.07 -446.10 -2.26 -22.32 16 5 C 0.54 19.82 7.81 87.66 0.68 20.50 16 6 O -0.56 -24.34 15.52 -3.02 -0.05 -24.39 16 7 C -0.11 -4.33 6.16 71.24 0.44 -3.89 16 8 S -0.17 -8.73 18.55 -56.49 -1.05 -9.78 16 9 C -0.53 -31.29 10.04 67.95 0.68 -30.60 16 10 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 11 C 0.04 2.67 5.50 84.86 0.47 3.14 16 12 N -0.92 -56.57 13.97 21.65 0.30 -56.26 16 13 Si 0.91 45.54 27.74 68.60 1.90 47.44 16 14 H -0.26 -12.65 7.11 99.48 0.71 -11.94 16 15 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 16 H -0.24 -11.74 6.74 99.48 0.67 -11.07 16 17 C 0.21 5.15 6.94 138.63 0.96 6.11 16 18 N -0.56 -11.80 10.87 -191.80 -2.08 -13.88 16 19 C 0.27 3.31 12.66 180.36 2.28 5.59 16 20 N -0.38 -5.52 4.04 -373.62 -1.51 -7.02 16 21 C 0.09 0.33 11.53 127.77 1.47 1.80 16 22 N -0.34 -8.20 12.70 -51.33 -0.65 -8.86 16 23 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 24 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 26 H 0.42 10.30 8.33 -92.71 -0.77 9.53 16 27 H 0.12 4.19 8.14 -2.39 -0.02 4.17 16 28 H 0.11 4.10 8.14 -2.40 -0.02 4.08 16 29 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 30 H 0.27 0.08 8.06 -2.91 -0.02 0.06 16 31 H 0.10 0.10 8.14 -2.39 -0.02 0.09 16 32 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.13 -0.46 8.14 -2.39 -0.02 -0.48 16 Total: -1.00 -81.27 308.07 2.74 -78.53 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.32 Total: 9.99 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: 7.81 Total: 6.55 kcal Atomic # 7 Polarization: -102.14 SS G_CDS: -6.20 Total: -108.35 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.05 Total: -24.39 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.90 Total: 47.44 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.05 Total: -9.78 kcal Total: -81.27 2.74 -78.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325989372.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.867 kcal (2) G-P(sol) polarization free energy of solvation -81.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds