Wall clock time and date at job start Mon Mar 30 2020 01:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 N 1.46506 * 109.46824 * 240.00126 * 2 1 3 5 5 C 1.34777 * 119.99873 * 85.00531 * 4 2 1 6 6 O 1.21284 * 119.99754 * 359.97438 * 5 4 2 7 7 C 1.50696 * 120.00137 * 179.97438 * 5 4 2 8 8 S 1.80994 * 109.47338 * 179.97438 * 7 5 4 9 9 C 1.76204 * 100.00333 * 179.97438 * 8 7 5 10 10 H 1.07998 * 119.99652 * 359.97438 * 9 8 7 11 11 C 1.38795 * 120.00282 * 180.02562 * 9 8 7 12 12 N 1.31633 * 119.99955 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 119.99902 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.47232 * 90.00152 * 13 11 9 15 15 H 1.48500 * 109.47178 * 210.00187 * 13 11 9 16 16 H 1.48500 * 109.47167 * 330.00076 * 13 11 9 17 17 C 1.50706 * 109.47032 * 120.00448 * 2 1 3 18 18 N 1.33242 * 125.52318 * 74.69301 * 17 2 1 19 19 C 1.30835 * 109.82362 * 179.85673 * 18 17 2 20 20 N 1.34433 * 108.07732 * 0.39900 * 19 18 17 21 21 C 1.46500 * 126.82012 * 179.72056 * 20 19 18 22 22 N 1.30702 * 125.52262 * 254.99737 * 17 2 1 23 23 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 25 25 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 26 26 H 0.96995 * 120.00050 * 264.72646 * 4 2 1 27 27 H 1.09004 * 109.47043 * 299.99732 * 7 5 4 28 28 H 1.09000 * 109.46978 * 59.99653 * 7 5 4 29 29 H 0.97003 * 119.99413 * 179.97438 * 12 11 9 30 30 H 1.07996 * 125.95933 * 180.12451 * 19 18 17 31 31 H 1.09000 * 109.46930 * 270.04104 * 21 20 19 32 32 H 1.08997 * 109.47138 * 30.04544 * 21 20 19 33 33 H 1.09004 * 109.46739 * 150.04314 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1963 5 6 2.1470 -0.0182 -2.3572 6 8 1.8582 1.1585 -2.4116 7 6 2.6498 -0.7284 -3.5875 8 16 2.7099 0.4345 -4.9732 9 6 3.3145 -0.6303 -6.2403 10 1 3.5252 -1.6663 -6.0200 11 6 3.5210 -0.1373 -7.5212 12 7 3.9722 -0.9329 -8.4679 13 14 3.1586 1.6553 -7.9017 14 1 4.3772 2.4688 -7.6604 15 1 2.7492 1.7867 -9.3231 16 1 2.0611 2.1355 -7.0241 17 6 2.0323 -0.7105 1.2305 18 7 2.0204 -2.0290 1.4221 19 6 2.5312 -2.3118 2.5930 20 7 2.8779 -1.1567 3.1869 21 6 3.4819 -0.9974 4.5120 22 7 2.5450 -0.1329 2.2848 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 2.2527 -1.6308 -1.1518 27 1 3.6492 -1.1202 -3.3980 28 1 1.9776 -1.5506 -3.8326 29 1 4.1161 -0.5883 -9.3631 30 1 2.6492 -3.3004 3.0114 31 1 2.6956 -0.8930 5.2596 32 1 4.0885 -1.8732 4.7424 33 1 4.1112 -0.1074 4.5198 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325989417.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:26 Heat of formation + Delta-G solvation = 53.171656 kcal Electronic energy + Delta-G solvation = -17573.738002 eV Core-core repulsion = 14569.982062 eV Total energy + Delta-G solvation = -3003.755940 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.44215 -39.31901 -35.82232 -33.89567 -32.39797 -31.90702 -30.84540 -28.54460 -27.52635 -25.57469 -24.03083 -22.49815 -20.74744 -20.11104 -18.00154 -17.34387 -16.48412 -16.36079 -15.93800 -15.26177 -15.01541 -14.91618 -13.94425 -13.89411 -13.85833 -13.53503 -13.27585 -12.94473 -12.75371 -12.23520 -12.08792 -11.97467 -11.39606 -11.22297 -10.97028 -10.57562 -10.35450 -10.14517 -9.92966 -9.80599 -9.46270 -9.01214 -8.94629 -8.45164 -6.86793 -6.24886 -3.96094 1.25135 1.91549 2.49798 2.85449 3.02031 3.35399 3.38733 3.54458 3.69194 3.74608 4.10823 4.37110 4.37542 4.62398 4.78777 4.84201 4.90665 5.12041 5.14317 5.25680 5.38990 5.61149 5.83419 5.84749 5.89608 6.01235 6.09138 6.17198 6.43116 6.56414 7.69341 7.75622 7.98404 8.46372 8.53265 9.21430 10.84422 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.042520 B = 0.003461 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.358536 B = 8088.336227 C = 8314.944404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.242 3.758 3 H 0.109 0.891 4 N -0.725 5.725 5 C 0.535 3.465 6 O -0.519 6.519 7 C -0.122 4.122 8 S -0.141 6.141 9 C -0.520 4.520 10 H 0.088 0.912 11 C 0.095 3.905 12 N -0.882 5.882 13 Si 0.857 3.143 14 H -0.267 1.267 15 H -0.275 1.275 16 H -0.235 1.235 17 C 0.221 3.779 18 N -0.535 5.535 19 C 0.255 3.745 20 N -0.386 5.386 21 C 0.097 3.903 22 N -0.305 5.305 23 H 0.065 0.935 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.407 0.593 27 H 0.097 0.903 28 H 0.100 0.900 29 H 0.270 0.730 30 H 0.221 0.779 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.938 -3.766 26.659 27.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.134 3.866 3 H 0.127 0.873 4 N -0.380 5.380 5 C 0.321 3.679 6 O -0.393 6.393 7 C -0.273 4.273 8 S 0.085 5.915 9 C -0.668 4.668 10 H 0.106 0.894 11 C -0.114 4.114 12 N -0.518 5.518 13 Si 0.682 3.318 14 H -0.192 1.192 15 H -0.200 1.200 16 H -0.158 1.158 17 C -0.062 4.062 18 N -0.262 5.262 19 C -0.041 4.041 20 N -0.176 5.176 21 C -0.046 4.046 22 N -0.134 5.134 23 H 0.084 0.916 24 H 0.082 0.918 25 H 0.096 0.904 26 H 0.242 0.758 27 H 0.115 0.885 28 H 0.118 0.882 29 H 0.080 0.920 30 H 0.237 0.763 31 H 0.099 0.901 32 H 0.112 0.888 33 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.350 -1.280 26.328 26.571 hybrid contribution 0.634 -1.536 0.126 1.667 sum -2.716 -2.816 26.454 26.742 Atomic orbital electron populations 1.22130 0.93129 1.03089 1.03108 1.18911 0.94377 0.95574 0.77713 0.87302 1.45930 1.69016 1.14594 1.08506 1.20287 0.76808 0.87155 0.83662 1.90699 1.48583 1.15645 1.84417 1.23267 1.04560 1.03492 0.95988 1.84762 1.87143 1.16859 1.02705 1.22331 1.50199 0.98864 0.95390 0.89364 1.24715 0.93393 0.98296 0.94953 1.69946 1.43509 1.35811 1.02559 0.86729 0.81130 0.84857 0.79105 1.19247 1.19995 1.15848 1.24280 0.97227 0.88864 0.95810 1.70342 1.23926 1.14895 1.17083 1.26076 0.94730 0.93547 0.89787 1.50428 1.46706 1.04810 1.15691 1.21973 0.98861 1.05002 0.78716 1.78076 1.21801 1.11729 1.01759 0.91569 0.91769 0.90415 0.75776 0.88478 0.88222 0.91982 0.76255 0.90125 0.88757 0.88880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 9.47 37.16 0.35 -1.54 16 2 C 0.24 3.32 3.12 -69.08 -0.22 3.10 16 3 H 0.11 1.64 7.58 -51.93 -0.39 1.25 16 4 N -0.73 -10.62 5.07 -54.93 -0.28 -10.90 16 5 C 0.53 9.91 7.81 -10.99 -0.09 9.83 16 6 O -0.52 -11.32 15.52 5.55 0.09 -11.24 16 7 C -0.12 -2.45 6.16 36.00 0.22 -2.23 16 8 S -0.14 -3.63 18.55 -107.50 -1.99 -5.63 16 9 C -0.52 -15.20 10.04 30.94 0.31 -14.88 16 10 H 0.09 2.69 8.03 -52.49 -0.42 2.26 16 11 C 0.09 2.81 5.50 -17.43 -0.10 2.72 16 12 N -0.88 -26.92 13.97 55.49 0.78 -26.14 16 13 Si 0.86 22.05 27.74 -169.99 -4.72 17.33 16 14 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.23 -6.01 6.74 56.52 0.38 -5.63 16 17 C 0.22 2.85 6.93 -156.86 -1.09 1.76 16 18 N -0.54 -6.15 10.87 -11.98 -0.13 -6.28 16 19 C 0.26 2.01 12.66 -90.65 -1.15 0.86 16 20 N -0.39 -3.28 4.04 -69.44 -0.28 -3.56 16 21 C 0.10 0.33 11.53 59.85 0.69 1.02 16 22 N -0.31 -3.84 12.70 32.42 0.41 -3.43 16 23 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 26 H 0.41 5.31 8.34 -40.82 -0.34 4.97 16 27 H 0.10 1.83 8.14 -51.91 -0.42 1.40 16 28 H 0.10 1.85 8.14 -51.92 -0.42 1.43 16 29 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 30 H 0.22 0.59 8.06 -52.49 -0.42 0.17 16 31 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.09 0.05 8.14 -51.93 -0.42 -0.38 16 33 H 0.09 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 308.07 15.07 4.64 4.64 Total: -1.00 -36.98 308.07 -6.66 -43.64 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -4.12 Total: 0.92 kcal Atomic # 6 Polarization: 1.69 SS G_CDS: -1.06 Total: 0.63 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: 0.50 Total: -50.31 kcal Atomic # 8 Polarization: -11.32 SS G_CDS: 0.09 Total: -11.24 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.72 Total: 17.33 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.63 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -36.98 -6.66 -43.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325989417.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.811 kcal (2) G-P(sol) polarization free energy of solvation -36.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds