Wall clock time and date at job start Mon Mar 30 2020 01:15:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47559 * 2 1 4 4 N 1.46506 * 109.46824 * 240.00126 * 2 1 3 5 5 C 1.34777 * 119.99873 * 85.00531 * 4 2 1 6 6 O 1.21284 * 119.99754 * 359.97438 * 5 4 2 7 7 C 1.50696 * 120.00137 * 179.97438 * 5 4 2 8 8 S 1.80994 * 109.47338 * 179.97438 * 7 5 4 9 9 C 1.76204 * 100.00333 * 179.97438 * 8 7 5 10 10 H 1.07998 * 119.99652 * 359.97438 * 9 8 7 11 11 C 1.38795 * 120.00282 * 180.02562 * 9 8 7 12 12 N 1.31633 * 119.99955 * 180.02562 * 11 9 8 13 13 Si 1.86799 * 119.99902 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.47232 * 90.00152 * 13 11 9 15 15 H 1.48500 * 109.47178 * 210.00187 * 13 11 9 16 16 H 1.48500 * 109.47167 * 330.00076 * 13 11 9 17 17 C 1.50706 * 109.47032 * 120.00448 * 2 1 3 18 18 N 1.33242 * 125.52318 * 74.69301 * 17 2 1 19 19 C 1.30835 * 109.82362 * 179.85673 * 18 17 2 20 20 N 1.34433 * 108.07732 * 0.39900 * 19 18 17 21 21 C 1.46500 * 126.82012 * 179.72056 * 20 19 18 22 22 N 1.30702 * 125.52262 * 254.99737 * 17 2 1 23 23 H 1.09002 * 109.47311 * 179.97438 * 1 2 3 24 24 H 1.09002 * 109.46959 * 299.99827 * 1 2 3 25 25 H 1.09003 * 109.47335 * 59.99421 * 1 2 3 26 26 H 0.96995 * 120.00050 * 264.72646 * 4 2 1 27 27 H 1.09004 * 109.47043 * 299.99732 * 7 5 4 28 28 H 1.09000 * 109.46978 * 59.99653 * 7 5 4 29 29 H 0.97003 * 119.99413 * 179.97438 * 12 11 9 30 30 H 1.07996 * 125.95933 * 180.12451 * 19 18 17 31 31 H 1.09000 * 109.46930 * 270.04104 * 21 20 19 32 32 H 1.08997 * 109.47138 * 30.04544 * 21 20 19 33 33 H 1.09004 * 109.46739 * 150.04314 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1963 5 6 2.1470 -0.0182 -2.3572 6 8 1.8582 1.1585 -2.4116 7 6 2.6498 -0.7284 -3.5875 8 16 2.7099 0.4345 -4.9732 9 6 3.3145 -0.6303 -6.2403 10 1 3.5252 -1.6663 -6.0200 11 6 3.5210 -0.1373 -7.5212 12 7 3.9722 -0.9329 -8.4679 13 14 3.1586 1.6553 -7.9017 14 1 4.3772 2.4688 -7.6604 15 1 2.7492 1.7867 -9.3231 16 1 2.0611 2.1355 -7.0241 17 6 2.0323 -0.7105 1.2305 18 7 2.0204 -2.0290 1.4221 19 6 2.5312 -2.3118 2.5930 20 7 2.8779 -1.1567 3.1869 21 6 3.4819 -0.9974 4.5120 22 7 2.5450 -0.1329 2.2848 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 2.2527 -1.6308 -1.1518 27 1 3.6492 -1.1202 -3.3980 28 1 1.9776 -1.5506 -3.8326 29 1 4.1161 -0.5883 -9.3631 30 1 2.6492 -3.3004 3.0114 31 1 2.6956 -0.8930 5.2596 32 1 4.0885 -1.8732 4.7424 33 1 4.1112 -0.1074 4.5198 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325989417.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:15:25 Heat of formation + Delta-G solvation = 26.332793 kcal Electronic energy + Delta-G solvation = -17574.901822 eV Core-core repulsion = 14569.982062 eV Total energy + Delta-G solvation = -3004.919761 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.17844 -40.75442 -36.95641 -34.69120 -34.64229 -32.94014 -31.90058 -29.96599 -28.05625 -27.84040 -25.00888 -23.15861 -21.88103 -21.30444 -19.91184 -18.32891 -17.88454 -17.18591 -17.04628 -16.91842 -16.48257 -16.06731 -15.66187 -15.07432 -14.85798 -14.70348 -14.49136 -14.00774 -13.90418 -13.44223 -13.33439 -13.18586 -12.99813 -12.74276 -12.62725 -12.44176 -11.85407 -11.18782 -11.15916 -11.03888 -10.90874 -10.57566 -10.52875 -10.26926 -8.98429 -8.50377 -6.21135 0.53525 0.97761 1.32904 1.34240 1.48514 1.52602 1.56556 1.77385 2.24220 2.28235 2.72109 2.87843 2.94243 3.51557 3.77991 3.97493 4.08195 4.14961 4.24631 4.43711 4.47233 4.50786 4.63854 4.71415 4.83477 5.04990 5.20840 5.24998 5.32602 5.72173 5.91458 6.12975 6.39773 6.94684 6.99834 7.12532 8.62170 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.042520 B = 0.003461 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.358536 B = 8088.336227 C = 8314.944404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.242 3.758 3 H 0.090 0.910 4 N -0.704 5.704 5 C 0.542 3.458 6 O -0.555 6.555 7 C -0.110 4.110 8 S -0.170 6.170 9 C -0.529 4.529 10 H 0.062 0.938 11 C 0.045 3.955 12 N -0.918 5.918 13 Si 0.915 3.085 14 H -0.263 1.263 15 H -0.259 1.259 16 H -0.235 1.235 17 C 0.208 3.792 18 N -0.565 5.565 19 C 0.266 3.734 20 N -0.383 5.383 21 C 0.087 3.913 22 N -0.341 5.341 23 H 0.072 0.928 24 H 0.077 0.923 25 H 0.062 0.938 26 H 0.417 0.583 27 H 0.111 0.889 28 H 0.117 0.883 29 H 0.277 0.723 30 H 0.272 0.728 31 H 0.096 0.904 32 H 0.131 0.869 33 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.040 -4.436 28.962 29.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.135 3.865 3 H 0.108 0.892 4 N -0.358 5.358 5 C 0.327 3.673 6 O -0.433 6.433 7 C -0.261 4.261 8 S 0.057 5.943 9 C -0.677 4.677 10 H 0.080 0.920 11 C -0.160 4.160 12 N -0.556 5.556 13 Si 0.737 3.263 14 H -0.187 1.187 15 H -0.183 1.183 16 H -0.159 1.159 17 C -0.075 4.075 18 N -0.293 5.293 19 C -0.029 4.029 20 N -0.173 5.173 21 C -0.053 4.053 22 N -0.171 5.171 23 H 0.091 0.909 24 H 0.096 0.904 25 H 0.081 0.919 26 H 0.254 0.746 27 H 0.130 0.870 28 H 0.135 0.865 29 H 0.086 0.914 30 H 0.287 0.713 31 H 0.114 0.886 32 H 0.150 0.850 33 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.442 -1.988 28.687 28.961 hybrid contribution 0.712 -1.476 -0.348 1.675 sum -2.730 -3.464 28.338 28.679 Atomic orbital electron populations 1.22029 0.92002 1.03436 1.02993 1.18872 0.95214 0.94699 0.77762 0.89176 1.45701 1.67495 1.14859 1.07765 1.19943 0.76647 0.86541 0.84139 1.90691 1.50562 1.17076 1.84985 1.23244 1.06116 1.02413 0.94321 1.84665 1.86934 1.18495 1.04217 1.22471 1.50086 0.98330 0.96788 0.91970 1.25573 0.93225 1.02353 0.94882 1.70022 1.44558 1.37774 1.03244 0.85859 0.81037 0.79858 0.79575 1.18725 1.18295 1.15911 1.23922 0.98342 0.89620 0.95592 1.70289 1.25593 1.14146 1.19254 1.27020 0.92421 0.94980 0.88513 1.50714 1.46026 1.04151 1.16420 1.22401 0.99612 1.06592 0.76672 1.77964 1.22522 1.13979 1.02597 0.90887 0.90433 0.91927 0.74561 0.87030 0.86529 0.91357 0.71295 0.88558 0.85047 0.89504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 9.47 71.98 0.68 -2.79 16 2 C 0.24 6.55 3.12 44.24 0.14 6.69 16 3 H 0.09 2.78 7.58 -2.39 -0.02 2.76 16 4 N -0.70 -20.06 5.07 -446.09 -2.26 -22.32 16 5 C 0.54 19.82 7.81 87.66 0.68 20.50 16 6 O -0.56 -24.34 15.52 -3.04 -0.05 -24.39 16 7 C -0.11 -4.33 6.16 71.23 0.44 -3.89 16 8 S -0.17 -8.73 18.55 -56.49 -1.05 -9.78 16 9 C -0.53 -31.28 10.04 67.95 0.68 -30.60 16 10 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 11 C 0.04 2.67 5.50 84.86 0.47 3.14 16 12 N -0.92 -56.57 13.97 21.65 0.30 -56.27 16 13 Si 0.91 45.54 27.74 68.60 1.90 47.44 16 14 H -0.26 -12.76 7.11 99.48 0.71 -12.05 16 15 H -0.26 -12.05 7.11 99.48 0.71 -11.34 16 16 H -0.24 -11.66 6.74 99.48 0.67 -10.99 16 17 C 0.21 5.15 6.93 138.64 0.96 6.11 16 18 N -0.56 -11.79 10.87 -191.80 -2.09 -13.88 16 19 C 0.27 3.31 12.66 180.36 2.28 5.59 16 20 N -0.38 -5.51 4.04 -373.61 -1.51 -7.02 16 21 C 0.09 0.33 11.53 127.77 1.47 1.80 16 22 N -0.34 -8.20 12.70 -51.33 -0.65 -8.85 16 23 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.42 10.30 8.34 -92.71 -0.77 9.52 16 27 H 0.11 4.08 8.14 -2.39 -0.02 4.06 16 28 H 0.12 4.21 8.14 -2.40 -0.02 4.19 16 29 H 0.28 15.76 8.31 -92.71 -0.77 14.99 16 30 H 0.27 0.08 8.06 -2.91 -0.02 0.06 16 31 H 0.10 0.10 8.14 -2.39 -0.02 0.08 16 32 H 0.13 -0.46 8.14 -2.39 -0.02 -0.48 16 33 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -81.26 308.07 2.73 -78.53 By element: Atomic # 1 Polarization: 9.67 SS G_CDS: 0.32 Total: 9.99 kcal Atomic # 6 Polarization: -1.25 SS G_CDS: 7.81 Total: 6.56 kcal Atomic # 7 Polarization: -102.14 SS G_CDS: -6.21 Total: -108.34 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: -0.05 Total: -24.39 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.90 Total: 47.44 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.05 Total: -9.78 kcal Total: -81.26 2.73 -78.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325989417.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.862 kcal (2) G-P(sol) polarization free energy of solvation -81.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds