Wall clock time and date at job start Mon Mar 30 2020 01:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47098 * 2 1 4 4 H 1.09003 * 109.46435 * 304.65426 * 3 2 1 5 5 S 1.80998 * 109.47186 * 64.65147 * 3 2 1 6 6 C 1.76192 * 100.00044 * 187.68412 * 5 3 2 7 7 N 1.32392 * 126.25915 * 358.29284 * 6 5 3 8 8 N 1.28511 * 110.20460 * 180.02562 * 7 6 5 9 9 C 1.33097 * 109.74765 * 359.97438 * 8 7 6 10 10 C 1.39783 * 126.56678 * 179.97438 * 9 8 7 11 11 H 1.07997 * 119.99748 * 189.17925 * 10 9 8 12 12 C 1.40077 * 119.99618 * 9.17222 * 10 9 8 13 13 N 1.30820 * 119.99930 * 191.20068 * 12 10 9 14 14 Si 1.86797 * 120.00323 * 11.20915 * 12 10 9 15 15 H 1.48505 * 109.46990 * 269.99392 * 14 12 10 16 16 H 1.48498 * 109.47426 * 29.99355 * 14 12 10 17 17 H 1.48499 * 109.47329 * 149.99839 * 14 12 10 18 18 N 1.36676 * 126.26300 * 178.62439 * 6 5 3 19 19 C 1.46496 * 127.14755 * 359.97438 * 18 6 5 20 20 C 1.50697 * 109.47216 * 184.65848 * 3 2 1 21 21 N 1.34775 * 120.00212 * 84.99719 * 20 3 2 22 22 O 1.21278 * 119.99678 * 264.99806 * 20 3 2 23 23 H 1.09003 * 109.47278 * 181.55548 * 1 2 3 24 24 H 1.09001 * 109.47727 * 301.55447 * 1 2 3 25 25 H 1.09000 * 109.47252 * 61.56302 * 1 2 3 26 26 H 1.08999 * 109.47340 * 239.99566 * 2 1 3 27 27 H 1.08999 * 109.46952 * 120.00069 * 2 1 3 28 28 H 0.96998 * 119.99732 * 354.89473 * 13 12 10 29 29 H 1.09001 * 109.47509 * 270.14221 * 19 18 6 30 30 H 1.09011 * 109.47183 * 30.14547 * 19 18 6 31 31 H 1.08999 * 109.46998 * 150.14215 * 19 18 6 32 32 H 0.96999 * 120.00312 * 359.97438 * 21 20 3 33 33 H 0.97006 * 119.99467 * 180.02562 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6101 1.9798 -0.8454 5 16 1.5523 2.2549 1.5422 6 6 2.0439 3.9088 1.1855 7 7 2.6356 4.3282 0.0779 8 7 2.8565 5.5925 0.1441 9 6 2.4159 6.0657 1.3075 10 6 2.4791 7.3918 1.7448 11 1 2.2254 7.6364 2.7656 12 6 2.8716 8.4034 0.8589 13 7 3.1430 9.6003 1.3116 14 14 3.0073 8.0433 -0.9690 15 1 4.3829 7.5790 -1.2813 16 1 2.0322 6.9863 -1.3391 17 1 2.7150 9.2784 -1.7399 18 7 1.8900 4.9923 2.0042 19 6 1.2892 5.0134 3.3402 20 6 3.5425 1.4441 -0.1154 21 7 4.1253 1.3746 -1.3286 22 8 4.2273 1.5080 0.8835 23 1 -0.3634 -1.0273 0.0279 24 1 -0.3634 0.5378 0.8757 25 1 -0.3634 0.4894 -0.9037 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.0016 9.8081 2.2485 29 1 0.2188 5.2004 3.2544 30 1 1.4523 4.0519 3.8271 31 1 1.7497 5.8037 3.9331 32 1 3.5777 1.3231 -2.1276 33 1 5.0925 1.3752 -1.4027 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326863504.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:27 Heat of formation + Delta-G solvation = 10.174025 kcal Electronic energy + Delta-G solvation = -18728.729245 eV Core-core repulsion = 15723.108787 eV Total energy + Delta-G solvation = -3005.620457 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.87882 -39.20888 -34.75014 -33.89100 -33.52645 -33.20480 -30.00490 -28.08108 -26.67649 -25.26260 -22.36880 -21.36005 -20.68947 -19.98188 -18.16895 -17.55023 -16.85545 -16.44570 -15.44119 -15.08049 -14.87038 -14.47089 -14.02538 -13.79288 -13.45326 -12.98252 -12.86192 -12.55849 -12.44122 -12.11634 -11.94384 -11.36558 -11.34119 -11.06349 -10.83786 -10.30666 -9.91490 -9.68824 -9.59951 -9.42774 -9.35857 -9.00150 -8.62855 -8.40320 -7.41603 -7.00577 -4.79121 1.73676 2.45786 2.93657 2.99961 3.52152 3.60616 3.69934 3.91088 4.02785 4.12788 4.37733 4.68618 4.82984 4.99826 5.12265 5.28552 5.37486 5.41504 5.56826 5.75573 5.75835 5.91392 5.93409 6.14277 6.42221 6.69398 6.98256 7.16539 7.42773 7.50059 7.57509 8.07725 8.39180 8.50598 8.59359 9.98203 10.15045 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.025291 B = 0.006443 C = 0.005753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.865777 B = 4344.739196 C = 4865.843770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.099 4.099 3 C -0.098 4.098 4 H 0.117 0.883 5 S 0.014 5.986 6 C 0.063 3.937 7 N -0.272 5.272 8 N -0.410 5.410 9 C 0.344 3.656 10 C -0.495 4.495 11 H 0.082 0.918 12 C 0.066 3.934 13 N -0.809 5.809 14 Si 1.106 2.894 15 H -0.278 1.278 16 H -0.257 1.257 17 H -0.311 1.311 18 N -0.511 5.511 19 C 0.101 3.899 20 C 0.535 3.465 21 N -0.848 5.848 22 O -0.524 6.524 23 H 0.060 0.940 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.283 0.717 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.399 0.601 33 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.503 -15.739 -2.592 16.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.138 4.138 3 C -0.231 4.231 4 H 0.135 0.865 5 S 0.242 5.758 6 C -0.310 4.310 7 N -0.116 5.116 8 N -0.259 5.259 9 C 0.100 3.900 10 C -0.536 4.536 11 H 0.101 0.899 12 C -0.156 4.156 13 N -0.433 5.433 14 Si 0.934 3.066 15 H -0.204 1.204 16 H -0.182 1.182 17 H -0.241 1.241 18 N -0.211 5.211 19 C -0.043 4.043 20 C 0.316 3.684 21 N -0.411 5.411 22 O -0.398 6.398 23 H 0.079 0.921 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.227 0.773 33 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -4.672 -15.498 -3.567 16.576 hybrid contribution -0.198 0.216 1.606 1.632 sum -4.870 -15.282 -1.962 16.159 Atomic orbital electron populations 1.21870 0.94092 1.02056 1.03282 1.21304 0.97332 0.91570 1.03557 1.23508 0.96320 1.01056 1.02207 0.86466 1.84401 1.75878 0.93820 1.21675 1.25535 1.16495 0.94075 0.94945 1.74179 1.13307 1.06384 1.17731 1.74153 1.32376 1.01371 1.18011 1.21661 0.91308 0.89502 0.87496 1.19348 1.45698 0.88420 1.00112 0.89949 1.27284 0.88476 0.91196 1.08689 1.70652 1.31457 1.21824 1.19400 0.82881 0.80281 0.72913 0.70491 1.20391 1.18234 1.24076 1.45847 1.52504 1.06978 1.15816 1.21543 0.98001 1.02740 0.82047 1.20083 0.89940 0.74803 0.83605 1.43612 1.11110 1.78231 1.08130 1.90766 1.64562 1.48219 1.36301 0.92141 0.91264 0.92093 0.90153 0.90498 0.90520 0.92067 0.91221 0.90286 0.77324 0.76903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.41 9.76 37.16 0.36 -1.04 16 2 C -0.10 -1.02 5.38 -26.73 -0.14 -1.17 16 3 C -0.10 -1.43 2.10 -27.88 -0.06 -1.49 16 4 H 0.12 1.71 8.12 -51.91 -0.42 1.29 16 5 S 0.01 0.26 19.28 -107.50 -2.07 -1.82 16 6 C 0.06 1.48 7.89 -87.27 -0.69 0.79 16 7 N -0.27 -7.04 10.94 30.89 0.34 -6.70 16 8 N -0.41 -11.57 7.55 31.26 0.24 -11.33 16 9 C 0.34 9.43 7.20 -154.81 -1.11 8.31 16 10 C -0.49 -13.59 9.47 -38.32 -0.36 -13.95 16 11 H 0.08 2.20 7.46 -52.49 -0.39 1.81 16 12 C 0.07 1.82 5.52 -17.29 -0.10 1.72 16 13 N -0.81 -22.11 13.65 55.56 0.76 -21.35 16 14 Si 1.11 27.99 26.39 -169.99 -4.49 23.51 16 15 H -0.28 -7.16 7.11 56.52 0.40 -6.76 16 16 H -0.26 -6.70 6.28 56.52 0.36 -6.35 16 17 H -0.31 -7.49 7.11 56.52 0.40 -7.09 16 18 N -0.51 -12.29 3.26 -123.18 -0.40 -12.69 16 19 C 0.10 1.88 10.89 59.84 0.65 2.53 16 20 C 0.53 8.94 6.24 -10.99 -0.07 8.87 16 21 N -0.85 -10.60 8.87 31.22 0.28 -10.32 16 22 O -0.52 -11.15 16.97 5.56 0.09 -11.05 16 23 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.07 0.70 7.07 -51.93 -0.37 0.34 16 25 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 26 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.28 7.38 8.73 -40.82 -0.36 7.02 16 29 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.07 1.14 7.85 -51.92 -0.41 0.73 16 31 H 0.08 1.42 7.47 -51.93 -0.39 1.04 16 32 H 0.40 3.67 8.83 -40.82 -0.36 3.31 16 33 H 0.40 4.64 8.93 -40.82 -0.36 4.28 16 LS Contribution 297.02 15.07 4.48 4.48 Total: -1.00 -35.44 297.02 -6.31 -41.75 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -4.01 Total: 0.97 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -1.52 Total: 4.57 kcal Atomic # 7 Polarization: -63.60 SS G_CDS: 1.21 Total: -62.39 kcal Atomic # 8 Polarization: -11.15 SS G_CDS: 0.09 Total: -11.05 kcal Atomic # 14 Polarization: 27.99 SS G_CDS: -4.49 Total: 23.51 kcal Atomic # 16 Polarization: 0.26 SS G_CDS: -2.07 Total: -1.82 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -35.44 -6.31 -41.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326863504.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.920 kcal (2) G-P(sol) polarization free energy of solvation -35.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds