Wall clock time and date at job start Mon Mar 30 2020 01:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47098 * 2 1 4 4 H 1.09003 * 109.46435 * 304.65426 * 3 2 1 5 5 S 1.80998 * 109.47186 * 64.65147 * 3 2 1 6 6 C 1.76192 * 100.00044 * 187.68412 * 5 3 2 7 7 N 1.32392 * 126.25915 * 358.29284 * 6 5 3 8 8 N 1.28511 * 110.20460 * 180.02562 * 7 6 5 9 9 C 1.33097 * 109.74765 * 359.97438 * 8 7 6 10 10 C 1.39783 * 126.56678 * 179.97438 * 9 8 7 11 11 H 1.07997 * 119.99748 * 189.17925 * 10 9 8 12 12 C 1.40077 * 119.99618 * 9.17222 * 10 9 8 13 13 N 1.30820 * 119.99930 * 191.20068 * 12 10 9 14 14 Si 1.86797 * 120.00323 * 11.20915 * 12 10 9 15 15 H 1.48505 * 109.46990 * 269.99392 * 14 12 10 16 16 H 1.48498 * 109.47426 * 29.99355 * 14 12 10 17 17 H 1.48499 * 109.47329 * 149.99839 * 14 12 10 18 18 N 1.36676 * 126.26300 * 178.62439 * 6 5 3 19 19 C 1.46496 * 127.14755 * 359.97438 * 18 6 5 20 20 C 1.50697 * 109.47216 * 184.65848 * 3 2 1 21 21 N 1.34775 * 120.00212 * 84.99719 * 20 3 2 22 22 O 1.21278 * 119.99678 * 264.99806 * 20 3 2 23 23 H 1.09003 * 109.47278 * 181.55548 * 1 2 3 24 24 H 1.09001 * 109.47727 * 301.55447 * 1 2 3 25 25 H 1.09000 * 109.47252 * 61.56302 * 1 2 3 26 26 H 1.08999 * 109.47340 * 239.99566 * 2 1 3 27 27 H 1.08999 * 109.46952 * 120.00069 * 2 1 3 28 28 H 0.96998 * 119.99732 * 354.89473 * 13 12 10 29 29 H 1.09001 * 109.47509 * 270.14221 * 19 18 6 30 30 H 1.09011 * 109.47183 * 30.14547 * 19 18 6 31 31 H 1.08999 * 109.46998 * 150.14215 * 19 18 6 32 32 H 0.96999 * 120.00312 * 359.97438 * 21 20 3 33 33 H 0.97006 * 119.99467 * 180.02562 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6101 1.9798 -0.8454 5 16 1.5523 2.2549 1.5422 6 6 2.0439 3.9088 1.1855 7 7 2.6356 4.3282 0.0779 8 7 2.8565 5.5925 0.1441 9 6 2.4159 6.0657 1.3075 10 6 2.4791 7.3918 1.7448 11 1 2.2254 7.6364 2.7656 12 6 2.8716 8.4034 0.8589 13 7 3.1430 9.6003 1.3116 14 14 3.0073 8.0433 -0.9690 15 1 4.3829 7.5790 -1.2813 16 1 2.0322 6.9863 -1.3391 17 1 2.7150 9.2784 -1.7399 18 7 1.8900 4.9923 2.0042 19 6 1.2892 5.0134 3.3402 20 6 3.5425 1.4441 -0.1154 21 7 4.1253 1.3746 -1.3286 22 8 4.2273 1.5080 0.8835 23 1 -0.3634 -1.0273 0.0279 24 1 -0.3634 0.5378 0.8757 25 1 -0.3634 0.4894 -0.9037 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.0016 9.8081 2.2485 29 1 0.2188 5.2004 3.2544 30 1 1.4523 4.0519 3.8271 31 1 1.7497 5.8037 3.9331 32 1 3.5777 1.3231 -2.1276 33 1 5.0925 1.3752 -1.4027 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326863504.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:26 Heat of formation + Delta-G solvation = -16.199012 kcal Electronic energy + Delta-G solvation = -18729.872865 eV Core-core repulsion = 15723.108787 eV Total energy + Delta-G solvation = -3006.764078 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.81366 -40.50472 -35.93341 -35.80041 -35.33944 -34.35210 -31.98244 -29.17478 -28.33797 -27.16853 -23.43009 -23.14256 -22.26316 -21.53504 -20.18226 -18.78103 -18.13848 -18.01012 -16.98304 -16.77634 -16.33105 -15.89896 -15.65954 -15.27209 -15.17208 -14.75257 -14.21049 -13.89075 -13.85429 -13.50444 -13.07848 -13.02552 -12.87123 -12.33785 -12.21569 -11.95201 -11.60939 -11.43797 -11.39118 -11.03311 -10.86425 -10.61467 -10.53254 -10.36260 -9.49841 -8.63259 -6.83119 0.27253 0.96288 1.00360 1.49149 1.60547 1.72416 1.94148 2.10207 2.21280 2.39349 2.54998 3.03974 3.69493 3.83608 3.90921 4.06663 4.31607 4.38318 4.47048 4.48203 4.55010 4.71302 4.81243 5.08131 5.15202 5.24476 5.37040 5.44790 5.70643 5.89550 6.00430 6.40611 6.42799 6.58423 7.34254 7.91892 8.17045 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.025291 B = 0.006443 C = 0.005753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.865777 B = 4344.739196 C = 4865.843770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.092 4.092 3 C -0.097 4.097 4 H 0.122 0.878 5 S 0.046 5.954 6 C 0.073 3.927 7 N -0.303 5.303 8 N -0.439 5.439 9 C 0.322 3.678 10 C -0.512 4.512 11 H 0.080 0.920 12 C 0.042 3.958 13 N -0.825 5.825 14 Si 1.140 2.860 15 H -0.290 1.290 16 H -0.272 1.272 17 H -0.294 1.294 18 N -0.516 5.516 19 C 0.092 3.908 20 C 0.527 3.473 21 N -0.829 5.829 22 O -0.578 6.578 23 H 0.083 0.917 24 H 0.055 0.945 25 H 0.066 0.934 26 H 0.112 0.888 27 H 0.074 0.926 28 H 0.285 0.715 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.417 0.583 33 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.660 -18.034 -3.138 19.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.131 4.131 3 C -0.230 4.230 4 H 0.141 0.859 5 S 0.273 5.727 6 C -0.302 4.302 7 N -0.146 5.146 8 N -0.287 5.287 9 C 0.075 3.925 10 C -0.554 4.554 11 H 0.098 0.902 12 C -0.177 4.177 13 N -0.451 5.451 14 Si 0.967 3.033 15 H -0.217 1.217 16 H -0.198 1.198 17 H -0.222 1.222 18 N -0.215 5.215 19 C -0.050 4.050 20 C 0.309 3.691 21 N -0.392 5.392 22 O -0.457 6.457 23 H 0.102 0.898 24 H 0.074 0.926 25 H 0.085 0.915 26 H 0.130 0.870 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.102 0.898 30 H 0.112 0.888 31 H 0.099 0.901 32 H 0.248 0.752 33 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -5.849 -17.786 -4.150 19.178 hybrid contribution 0.109 0.644 1.788 1.903 sum -5.740 -17.143 -2.363 18.232 Atomic orbital electron populations 1.21880 0.92822 1.03526 1.02951 1.21411 0.98288 0.88460 1.04968 1.23772 0.95277 1.03462 1.00528 0.85948 1.84337 1.74765 0.89702 1.23897 1.26678 1.13120 0.96532 0.93867 1.74094 1.15602 1.05593 1.19280 1.74040 1.33071 1.02697 1.18900 1.21743 0.92317 0.90291 0.88168 1.19352 1.47005 0.88854 1.00146 0.90183 1.27811 0.88434 0.91285 1.10218 1.70654 1.32738 1.22005 1.19667 0.82399 0.78967 0.72783 0.69109 1.21683 1.19780 1.22227 1.46217 1.51672 1.06365 1.17282 1.21894 0.99044 1.04276 0.79783 1.20450 0.90632 0.74180 0.83883 1.43490 1.11808 1.76136 1.07779 1.90745 1.65744 1.51103 1.38132 0.89769 0.92604 0.91457 0.87017 0.90755 0.90372 0.89758 0.88807 0.90111 0.75213 0.76237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.76 71.98 0.70 -1.51 16 2 C -0.09 -1.58 5.38 30.59 0.16 -1.42 16 3 C -0.10 -2.61 2.10 29.85 0.06 -2.55 16 4 H 0.12 3.24 8.12 -2.39 -0.02 3.22 16 5 S 0.05 1.52 19.28 -56.49 -1.09 0.43 16 6 C 0.07 3.33 7.89 179.18 1.41 4.75 16 7 N -0.30 -15.56 10.94 -56.17 -0.61 -16.18 16 8 N -0.44 -24.95 7.55 -55.02 -0.42 -25.36 16 9 C 0.32 17.77 7.20 133.23 0.96 18.73 16 10 C -0.51 -28.53 9.47 23.09 0.22 -28.31 16 11 H 0.08 4.35 7.46 -2.91 -0.02 4.33 16 12 C 0.04 2.34 5.52 85.29 0.47 2.81 16 13 N -0.83 -45.47 13.65 21.85 0.30 -45.17 16 14 Si 1.14 57.73 26.39 68.60 1.81 59.54 16 15 H -0.29 -15.06 7.11 99.48 0.71 -14.35 16 16 H -0.27 -14.28 6.28 99.48 0.63 -13.66 16 17 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 18 N -0.52 -24.44 3.26 -543.62 -1.77 -26.21 16 19 C 0.09 3.28 10.89 127.77 1.39 4.67 16 20 C 0.53 16.71 6.24 87.66 0.55 17.26 16 21 N -0.83 -19.04 8.87 -173.54 -1.54 -20.58 16 22 O -0.58 -24.17 16.97 -3.02 -0.05 -24.22 16 23 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.05 0.96 7.07 -2.39 -0.02 0.94 16 25 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 27 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.29 15.03 8.73 -92.71 -0.81 14.22 16 29 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 30 H 0.09 2.85 7.85 -2.38 -0.02 2.83 16 31 H 0.08 2.83 7.47 -2.39 -0.02 2.82 16 32 H 0.42 6.53 8.83 -92.71 -0.82 5.71 16 33 H 0.41 8.76 8.93 -92.70 -0.83 7.93 16 Total: -1.00 -77.42 297.02 1.95 -75.47 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -0.61 Total: 7.86 kcal Atomic # 6 Polarization: 8.48 SS G_CDS: 5.93 Total: 14.41 kcal Atomic # 7 Polarization: -129.45 SS G_CDS: -4.04 Total: -133.49 kcal Atomic # 8 Polarization: -24.17 SS G_CDS: -0.05 Total: -24.22 kcal Atomic # 14 Polarization: 57.73 SS G_CDS: 1.81 Total: 59.54 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -1.09 Total: 0.43 kcal Total: -77.42 1.95 -75.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326863504.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.267 kcal (2) G-P(sol) polarization free energy of solvation -77.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.950 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds