Wall clock time and date at job start Mon Mar 30 2020 01:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 110.65213 * 2 1 4 4 C 1.53003 * 109.47298 * 62.08709 * 3 2 1 5 5 C 1.52998 * 109.47298 * 179.97438 * 4 3 2 6 6 C 1.50699 * 109.47178 * 180.02562 * 5 4 3 7 7 O 1.21211 * 119.99977 * 359.97438 * 6 5 4 8 8 O 1.34314 * 120.00084 * 179.97438 * 6 5 4 9 9 C 1.34920 * 116.99783 * 179.97438 * 8 6 5 10 10 H 1.08000 * 120.00444 * 0.02562 * 9 8 6 11 11 C 1.38751 * 119.99675 * 180.02562 * 9 8 6 12 12 N 1.31444 * 120.00338 * 0.02562 * 11 9 8 13 13 Si 1.86806 * 120.00128 * 180.02562 * 11 9 8 14 14 H 1.48507 * 109.46614 * 0.02562 * 13 11 9 15 15 H 1.48493 * 109.47077 * 119.99926 * 13 11 9 16 16 H 1.48501 * 109.47111 * 240.00294 * 13 11 9 17 17 N 1.47308 * 110.49977 * 122.96883 * 2 1 3 18 18 C 1.34523 * 106.61978 * 118.82402 * 17 2 1 19 19 O 1.21531 * 123.77675 * 179.76781 * 18 17 2 20 20 N 1.33795 * 112.45569 * 359.77017 * 18 17 2 21 21 C 1.34773 * 111.64536 * 359.97438 * 20 18 17 22 22 O 1.21233 * 127.15617 * 179.97438 * 21 20 18 23 23 H 1.09010 * 109.46696 * 182.21277 * 1 2 3 24 24 H 1.08994 * 109.47497 * 302.20948 * 1 2 3 25 25 H 1.09005 * 109.47439 * 62.21509 * 1 2 3 26 26 H 1.09006 * 109.47371 * 182.08420 * 3 2 1 27 27 H 1.09002 * 109.47324 * 302.08842 * 3 2 1 28 28 H 1.08998 * 109.46834 * 299.99861 * 4 3 2 29 29 H 1.08998 * 109.47313 * 59.99821 * 4 3 2 30 30 H 1.08998 * 109.47064 * 299.99720 * 5 4 3 31 31 H 1.08998 * 109.47085 * 59.99681 * 5 4 3 32 32 H 0.96999 * 120.00329 * 179.97438 * 12 11 9 33 33 H 0.97003 * 126.69492 * 298.55907 * 17 2 1 34 34 H 0.97002 * 124.17848 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0696 1.4317 0.0000 4 6 1.6176 2.1471 1.2747 5 6 2.1578 3.5786 1.2750 6 6 1.7131 4.2830 2.5308 7 8 1.0313 3.6983 3.3447 8 8 2.0723 5.5589 2.7482 9 6 1.6404 6.1304 3.8915 10 1 1.0346 5.5638 4.5833 11 6 1.9745 7.4461 4.1786 12 7 2.7113 8.1359 3.3366 13 14 1.3772 8.2374 5.7619 14 1 0.5717 7.2560 6.5323 15 1 2.5453 8.6639 6.5734 16 1 0.5402 9.4207 5.4388 17 7 2.0459 -0.7509 1.1576 18 6 2.7628 -1.7760 0.6628 19 8 3.3347 -2.5961 1.3536 20 7 2.7758 -1.7918 -0.6750 21 6 2.0629 -0.7712 -1.1912 22 8 1.8889 -0.5191 -2.3642 23 1 -0.3633 -1.0270 0.0397 24 1 -0.3634 0.5477 0.8694 25 1 -0.3634 0.4791 -0.9092 26 1 3.1588 1.4095 -0.0374 27 1 1.6870 1.9642 -0.8707 28 1 0.5285 2.1693 1.3121 29 1 2.0003 1.6146 2.1454 30 1 3.2469 3.5559 1.2378 31 1 1.7755 4.1113 0.4043 32 1 2.9446 9.0558 3.5371 33 1 1.9006 -0.5440 2.0941 34 1 3.2403 -2.4563 -1.2076 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327124572.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:38:41 Heat of formation + Delta-G solvation = -168.552429 kcal Electronic energy + Delta-G solvation = -20331.973760 eV Core-core repulsion = 16843.557520 eV Total energy + Delta-G solvation = -3488.416240 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.55562 -40.96486 -39.78500 -38.17590 -37.31303 -36.19987 -34.30586 -34.11853 -31.79313 -28.86618 -27.30438 -26.01651 -24.09347 -23.16064 -21.53211 -21.27253 -19.84370 -19.27362 -18.42363 -17.69905 -17.58402 -17.09955 -16.94887 -16.68359 -16.43216 -16.19908 -15.87165 -15.33104 -15.08107 -14.45865 -14.10044 -13.70250 -13.51890 -13.36772 -13.05915 -12.91107 -12.68020 -12.39821 -12.28422 -12.14317 -12.00393 -11.91119 -11.63467 -11.51656 -11.22531 -10.96792 -10.67902 -10.53977 -8.52219 -6.31663 0.49285 1.32575 1.35775 1.40801 1.53820 1.70161 1.91839 2.08002 2.14987 2.77207 2.94726 2.99583 3.46503 3.66588 4.10074 4.12178 4.24915 4.33021 4.59579 4.61902 4.70850 4.79691 4.88196 4.95005 5.04130 5.10048 5.23433 5.24447 5.38460 5.74629 5.85945 5.86242 6.34447 6.73547 6.94094 7.08438 7.82147 8.68857 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.037875 B = 0.003392 C = 0.003292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.105116 B = 8251.754652 C = 8503.116575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.125 3.875 3 C -0.107 4.107 4 C -0.094 4.094 5 C -0.096 4.096 6 C 0.392 3.608 7 O -0.582 6.582 8 O -0.251 6.251 9 C -0.420 4.420 10 H 0.081 0.919 11 C -0.005 4.005 12 N -0.905 5.905 13 Si 1.015 2.985 14 H -0.264 1.264 15 H -0.262 1.262 16 H -0.261 1.261 17 N -0.705 5.705 18 C 0.707 3.293 19 O -0.585 6.585 20 N -0.670 5.670 21 C 0.542 3.458 22 O -0.483 6.483 23 H 0.072 0.928 24 H 0.090 0.910 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.109 0.891 28 H 0.080 0.920 29 H 0.065 0.935 30 H 0.107 0.893 31 H 0.115 0.885 32 H 0.278 0.722 33 H 0.447 0.553 34 H 0.440 0.560 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.401 -15.238 -9.183 17.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.035 3.965 3 C -0.145 4.145 4 C -0.132 4.132 5 C -0.133 4.133 6 C 0.241 3.759 7 O -0.480 6.480 8 O -0.160 6.160 9 C -0.495 4.495 10 H 0.099 0.901 11 C -0.205 4.205 12 N -0.542 5.542 13 Si 0.834 3.166 14 H -0.188 1.188 15 H -0.187 1.187 16 H -0.185 1.185 17 N -0.370 5.370 18 C 0.406 3.594 19 O -0.462 6.462 20 N -0.341 5.341 21 C 0.328 3.672 22 O -0.353 6.353 23 H 0.091 0.909 24 H 0.108 0.892 25 H 0.113 0.887 26 H 0.101 0.899 27 H 0.127 0.873 28 H 0.098 0.902 29 H 0.084 0.916 30 H 0.126 0.874 31 H 0.133 0.867 32 H 0.087 0.913 33 H 0.294 0.706 34 H 0.284 0.716 Dipole moment (debyes) X Y Z Total from point charges -2.324 -15.396 -9.261 18.116 hybrid contribution 0.118 0.164 0.923 0.945 sum -2.206 -15.232 -8.338 17.504 Atomic orbital electron populations 1.22106 0.88621 1.04328 1.05763 1.21552 0.98436 0.93470 0.83037 1.21778 1.02228 0.90682 0.99808 1.21297 1.02168 0.92158 0.97578 1.21264 1.03760 0.95913 0.92380 1.24699 0.79643 0.81473 0.90113 1.90513 1.40714 1.67399 1.49376 1.83908 1.65541 1.25954 1.40581 1.21427 1.34483 0.96696 0.96943 0.90084 1.26496 0.95794 0.95266 1.02980 1.70076 1.35706 1.10821 1.37640 0.84602 0.78603 0.78087 0.75305 1.18824 1.18661 1.18510 1.45799 1.53418 1.27777 1.10039 1.15911 0.79429 0.82195 0.81878 1.91040 1.50275 1.43210 1.61641 1.44223 1.50756 1.30967 1.08170 1.20792 0.76559 0.80259 0.89631 1.90840 1.57605 1.69433 1.17467 0.90860 0.89153 0.88742 0.89947 0.87298 0.90190 0.91595 0.87439 0.86679 0.91311 0.70644 0.71582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 8.72 71.98 0.63 -1.22 16 2 C 0.13 1.85 1.00 2.98 0.00 1.85 16 3 C -0.11 -1.67 4.57 30.59 0.14 -1.53 16 4 C -0.09 -2.08 4.08 30.59 0.12 -1.96 16 5 C -0.10 -2.83 5.81 29.85 0.17 -2.66 16 6 C 0.39 18.18 7.91 71.24 0.56 18.75 16 7 O -0.58 -29.40 15.22 20.77 0.32 -29.09 16 8 O -0.25 -14.32 9.75 14.84 0.14 -14.18 16 9 C -0.42 -25.02 9.64 67.94 0.66 -24.37 16 10 H 0.08 4.90 6.86 -2.91 -0.02 4.88 16 11 C -0.01 -0.30 5.49 84.87 0.47 0.16 16 12 N -0.90 -52.93 13.67 21.62 0.30 -52.64 16 13 Si 1.01 42.88 29.55 68.60 2.03 44.90 16 14 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 15 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 16 H -0.26 -10.29 7.11 99.48 0.71 -9.59 16 17 N -0.71 -11.43 5.51 -439.84 -2.42 -13.85 16 18 C 0.71 14.03 8.99 179.44 1.61 15.64 16 19 O -0.58 -16.24 18.04 -3.81 -0.07 -16.30 16 20 N -0.67 -10.31 5.70 -441.12 -2.52 -12.83 16 21 C 0.54 9.01 7.48 87.94 0.66 9.67 16 22 O -0.48 -10.28 18.02 -2.88 -0.05 -10.33 16 23 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 24 H 0.09 1.13 6.49 -2.39 -0.02 1.12 16 25 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 26 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 27 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.08 1.78 6.49 -2.39 -0.02 1.77 16 29 H 0.07 1.54 7.15 -2.39 -0.02 1.53 16 30 H 0.11 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.12 2.96 8.14 -2.39 -0.02 2.94 16 32 H 0.28 14.71 8.31 -92.71 -0.77 13.94 16 33 H 0.45 6.81 8.24 -92.71 -0.76 6.04 16 34 H 0.44 5.04 8.96 -92.71 -0.83 4.20 16 Total: -1.00 -78.05 301.83 2.32 -75.73 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -0.43 Total: 14.23 kcal Atomic # 6 Polarization: 9.33 SS G_CDS: 5.02 Total: 14.35 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -4.64 Total: -79.31 kcal Atomic # 8 Polarization: -70.24 SS G_CDS: 0.34 Total: -69.90 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.90 kcal Total: -78.05 2.32 -75.73 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327124572.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.826 kcal (2) G-P(sol) polarization free energy of solvation -78.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds