Wall clock time and date at job start Mon Mar 30 2020 01:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47451 * 2 1 4 4 C 1.50704 * 109.46745 * 239.99807 * 2 1 3 5 5 H 1.07994 * 120.00471 * 275.10078 * 4 2 1 6 6 C 1.37881 * 119.99643 * 95.11244 * 4 2 1 7 7 N 1.31516 * 119.99696 * 184.90661 * 6 4 2 8 8 Si 1.86799 * 120.00269 * 4.89906 * 6 4 2 9 9 H 1.48496 * 109.46932 * 84.82446 * 8 6 4 10 10 H 1.48491 * 109.47212 * 204.82741 * 8 6 4 11 11 H 1.48507 * 109.46996 * 324.82915 * 8 6 4 12 12 C 1.50703 * 109.47012 * 120.00026 * 2 1 3 13 13 O 1.21283 * 119.99860 * 119.99746 * 12 2 1 14 14 N 1.34770 * 120.00307 * 299.99943 * 12 2 1 15 15 C 1.46498 * 120.00284 * 180.02562 * 14 12 2 16 16 C 1.50700 * 109.47329 * 179.97438 * 15 14 12 17 17 N 1.30298 * 126.34146 * 90.02278 * 16 15 14 18 18 N 1.28519 * 110.07851 * 179.97438 * 17 16 15 19 19 C 1.31283 * 109.86105 * 0.02562 * 18 17 16 20 20 S 1.76199 * 126.48871 * 180.02562 * 19 18 17 21 21 N 1.36541 * 107.02566 * 359.77041 * 19 18 17 22 22 C 1.46501 * 127.14266 * 180.23175 * 21 19 18 23 23 H 1.08999 * 109.47215 * 175.07421 * 1 2 3 24 24 H 1.08996 * 109.46878 * 55.07545 * 1 2 3 25 25 H 1.08997 * 109.46791 * 295.07478 * 1 2 3 26 26 H 0.97001 * 120.00027 * 179.97438 * 7 6 4 27 27 H 0.97000 * 119.99493 * 359.97438 * 14 12 2 28 28 H 1.08995 * 109.47033 * 300.00320 * 15 14 12 29 29 H 1.08997 * 109.46818 * 59.99864 * 15 14 12 30 30 H 1.41001 * 99.99899 * 89.97076 * 20 19 18 31 31 H 1.08999 * 109.47318 * 270.15032 * 22 21 19 32 32 H 1.09009 * 109.46979 * 30.15185 * 22 21 19 33 33 H 1.08997 * 109.47331 * 150.14888 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1339 -1.7856 -1.2297 6 6 2.3624 0.0123 -2.3573 7 7 2.7082 -0.6128 -3.4616 8 14 2.3182 1.8793 -2.3157 9 1 3.6038 2.3929 -1.7787 10 1 2.1127 2.4003 -3.6909 11 1 1.2029 2.3287 -1.4442 12 6 2.0324 -0.7104 1.2305 13 8 2.7296 -1.6966 1.1192 14 7 1.7068 -0.2500 2.4546 15 6 2.1956 -0.9403 3.6507 16 6 1.6937 -0.2297 4.8812 17 7 0.5798 -0.4718 5.5124 18 7 0.4630 0.3176 6.5198 19 6 1.5050 1.1134 6.5861 20 16 1.7938 2.3630 7.7943 21 7 2.3253 0.7855 5.5450 22 6 3.6135 1.3962 5.2076 23 1 -0.3633 -1.0239 -0.0882 24 1 -0.3633 0.5883 -0.8426 25 1 -0.3633 0.4355 0.9308 26 1 2.9400 -0.1044 -4.2545 27 1 1.1495 0.5389 2.5435 28 1 1.8327 -1.9681 3.6508 29 1 3.2856 -0.9399 3.6505 30 1 2.4894 1.6108 8.7631 31 1 3.4518 2.2353 4.5310 32 1 4.0968 1.7513 6.1179 33 1 4.2506 0.6563 4.7230 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327880611.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:36 Heat of formation + Delta-G solvation = 47.570227 kcal Electronic energy + Delta-G solvation = -18252.158728 eV Core-core repulsion = 15248.159892 eV Total energy + Delta-G solvation = -3003.998836 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.31494 -39.02682 -35.56671 -34.58537 -33.72199 -31.64970 -30.81452 -28.13847 -26.82099 -25.28507 -23.16774 -22.56935 -21.22907 -19.55251 -18.59215 -17.24621 -17.11423 -16.81529 -16.28139 -15.52099 -15.21716 -14.52394 -14.35567 -14.04151 -13.84295 -13.31006 -13.09759 -12.76267 -12.43646 -12.20637 -12.09217 -11.78491 -11.44656 -11.14341 -10.88673 -10.79399 -10.58145 -10.33587 -9.87917 -9.71917 -9.22723 -8.87900 -8.80566 -8.77278 -8.59135 -6.11066 -4.10793 0.53776 0.92489 1.86773 2.15736 2.48406 3.19664 3.26450 3.29708 3.48074 3.65594 3.95721 4.17446 4.33691 4.55159 4.66298 4.98778 5.02425 5.18898 5.39897 5.51028 5.59494 5.90054 6.12142 6.20841 6.35199 6.49110 6.67083 6.79594 7.14930 7.48691 7.96034 8.22202 8.47670 8.97826 9.04734 9.47847 11.02100 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.030448 B = 0.004206 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.383774 B = 6656.121240 C = 6961.889699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.001 4.001 3 H 0.055 0.945 4 C -0.496 4.496 5 H 0.087 0.913 6 C 0.072 3.928 7 N -0.893 5.893 8 Si 0.871 3.129 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.264 1.264 12 C 0.524 3.476 13 O -0.524 6.524 14 N -0.746 5.746 15 C 0.206 3.794 16 C 0.191 3.809 17 N -0.271 5.271 18 N -0.238 5.238 19 C 0.139 3.861 20 S -0.005 6.005 21 N -0.454 5.454 22 C 0.065 3.935 23 H 0.054 0.946 24 H 0.055 0.945 25 H 0.026 0.974 26 H 0.265 0.735 27 H 0.398 0.602 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.609 8.515 20.761 22.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.023 4.023 3 H 0.072 0.928 4 C -0.534 4.534 5 H 0.105 0.895 6 C -0.130 4.130 7 N -0.531 5.531 8 Si 0.698 3.302 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.189 1.189 12 C 0.313 3.687 13 O -0.397 6.397 14 N -0.403 5.403 15 C 0.080 3.920 16 C -0.078 4.078 17 N -0.115 5.115 18 N -0.083 5.083 19 C -0.235 4.235 20 S 0.145 5.855 21 N -0.147 5.147 22 C -0.077 4.077 23 H 0.073 0.927 24 H 0.074 0.926 25 H 0.045 0.955 26 H 0.075 0.925 27 H 0.231 0.769 28 H 0.121 0.879 29 H 0.102 0.898 30 H 0.067 0.933 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.968 7.959 21.261 22.723 hybrid contribution 1.329 0.804 -0.325 1.587 sum 2.297 8.763 20.936 22.812 Atomic orbital electron populations 1.21963 0.96526 1.01623 0.99170 1.19352 0.94236 0.96876 0.91867 0.92751 1.20743 1.43147 0.96224 0.93332 0.89501 1.25027 0.94613 0.97997 0.95334 1.69881 1.45783 1.35726 1.01668 0.86966 0.78895 0.86710 0.77614 1.20165 1.21178 1.18929 1.21910 0.78838 0.84579 0.83419 1.90604 1.36851 1.26019 1.86239 1.46415 1.56165 1.33028 1.04721 1.19485 0.98992 0.95896 0.77637 1.25354 0.92162 0.91325 0.98937 1.74225 1.14617 1.19280 1.03350 1.74832 1.17883 1.02592 1.12997 1.25943 0.93719 1.06120 0.97758 1.87097 1.75314 1.07091 1.16040 1.47036 1.18756 1.27175 1.21693 1.22308 0.81221 1.00388 1.03812 0.92689 0.92606 0.95461 0.92475 0.76853 0.87865 0.89759 0.93269 0.88710 0.88469 0.88222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.65 9.12 37.16 0.34 -2.31 16 2 C 0.00 -0.03 2.30 -92.92 -0.21 -0.25 16 3 H 0.05 1.17 5.29 -51.93 -0.27 0.89 16 4 C -0.50 -13.85 8.36 -34.44 -0.29 -14.13 16 5 H 0.09 2.76 7.61 -52.49 -0.40 2.36 16 6 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 7 N -0.89 -26.96 13.96 55.43 0.77 -26.19 16 8 Si 0.87 20.29 26.99 -169.99 -4.59 15.70 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.26 -5.69 6.82 56.52 0.39 -5.31 16 12 C 0.52 10.85 7.15 -10.99 -0.08 10.77 16 13 O -0.52 -12.81 15.77 5.55 0.09 -12.72 16 14 N -0.75 -11.59 5.41 -61.48 -0.33 -11.93 16 15 C 0.21 2.74 6.04 -5.19 -0.03 2.71 16 16 C 0.19 2.45 7.44 -154.00 -1.15 1.30 16 17 N -0.27 -4.16 12.17 32.99 0.40 -3.76 16 18 N -0.24 -3.50 12.23 30.68 0.38 -3.13 16 19 C 0.14 1.60 8.37 -88.34 -0.74 0.86 16 20 S -0.01 -0.04 25.78 -107.50 -2.77 -2.81 16 21 N -0.45 -4.71 3.21 -120.90 -0.39 -5.10 16 22 C 0.07 0.41 10.91 59.85 0.65 1.07 16 23 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.03 0.44 7.43 -51.93 -0.39 0.05 16 26 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.40 5.54 7.82 -40.82 -0.32 5.22 16 28 H 0.10 1.46 8.14 -51.93 -0.42 1.03 16 29 H 0.08 1.00 7.26 -51.93 -0.38 0.63 16 30 H 0.10 0.59 9.55 96.90 0.93 1.52 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.10 0.40 7.86 -51.92 -0.41 -0.01 16 33 H 0.10 0.56 7.25 -51.93 -0.38 0.18 16 LS Contribution 302.67 15.07 4.56 4.56 Total: -1.00 -34.51 302.67 -5.94 -40.45 By element: Atomic # 1 Polarization: 5.44 SS G_CDS: -2.46 Total: 2.99 kcal Atomic # 6 Polarization: 3.55 SS G_CDS: -1.60 Total: 1.95 kcal Atomic # 7 Polarization: -50.94 SS G_CDS: 0.83 Total: -50.11 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.09 Total: -12.72 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.59 Total: 15.70 kcal Atomic # 16 Polarization: -0.04 SS G_CDS: -2.77 Total: -2.81 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.51 -5.94 -40.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327880611.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.017 kcal (2) G-P(sol) polarization free energy of solvation -34.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds