Wall clock time and date at job start Mon Mar 30 2020 01:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08995 * 109.47451 * 2 1 4 4 C 1.50704 * 109.46745 * 239.99807 * 2 1 3 5 5 H 1.07994 * 120.00471 * 275.10078 * 4 2 1 6 6 C 1.37881 * 119.99643 * 95.11244 * 4 2 1 7 7 N 1.31516 * 119.99696 * 184.90661 * 6 4 2 8 8 Si 1.86799 * 120.00269 * 4.89906 * 6 4 2 9 9 H 1.48496 * 109.46932 * 84.82446 * 8 6 4 10 10 H 1.48491 * 109.47212 * 204.82741 * 8 6 4 11 11 H 1.48507 * 109.46996 * 324.82915 * 8 6 4 12 12 C 1.50703 * 109.47012 * 120.00026 * 2 1 3 13 13 O 1.21283 * 119.99860 * 119.99746 * 12 2 1 14 14 N 1.34770 * 120.00307 * 299.99943 * 12 2 1 15 15 C 1.46498 * 120.00284 * 180.02562 * 14 12 2 16 16 C 1.50700 * 109.47329 * 179.97438 * 15 14 12 17 17 N 1.30298 * 126.34146 * 90.02278 * 16 15 14 18 18 N 1.28519 * 110.07851 * 179.97438 * 17 16 15 19 19 C 1.31283 * 109.86105 * 0.02562 * 18 17 16 20 20 S 1.76199 * 126.48871 * 180.02562 * 19 18 17 21 21 N 1.36541 * 107.02566 * 359.77041 * 19 18 17 22 22 C 1.46501 * 127.14266 * 180.23175 * 21 19 18 23 23 H 1.08999 * 109.47215 * 175.07421 * 1 2 3 24 24 H 1.08996 * 109.46878 * 55.07545 * 1 2 3 25 25 H 1.08997 * 109.46791 * 295.07478 * 1 2 3 26 26 H 0.97001 * 120.00027 * 179.97438 * 7 6 4 27 27 H 0.97000 * 119.99493 * 359.97438 * 14 12 2 28 28 H 1.08995 * 109.47033 * 300.00320 * 15 14 12 29 29 H 1.08997 * 109.46818 * 59.99864 * 15 14 12 30 30 H 1.41001 * 99.99899 * 89.97076 * 20 19 18 31 31 H 1.08999 * 109.47318 * 270.15032 * 22 21 19 32 32 H 1.09009 * 109.46979 * 30.15185 * 22 21 19 33 33 H 1.08997 * 109.47331 * 150.14888 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.1339 -1.7856 -1.2297 6 6 2.3624 0.0123 -2.3573 7 7 2.7082 -0.6128 -3.4616 8 14 2.3182 1.8793 -2.3157 9 1 3.6038 2.3929 -1.7787 10 1 2.1127 2.4003 -3.6909 11 1 1.2029 2.3287 -1.4442 12 6 2.0324 -0.7104 1.2305 13 8 2.7296 -1.6966 1.1192 14 7 1.7068 -0.2500 2.4546 15 6 2.1956 -0.9403 3.6507 16 6 1.6937 -0.2297 4.8812 17 7 0.5798 -0.4718 5.5124 18 7 0.4630 0.3176 6.5198 19 6 1.5050 1.1134 6.5861 20 16 1.7938 2.3630 7.7943 21 7 2.3253 0.7855 5.5450 22 6 3.6135 1.3962 5.2076 23 1 -0.3633 -1.0239 -0.0882 24 1 -0.3633 0.5883 -0.8426 25 1 -0.3633 0.4355 0.9308 26 1 2.9400 -0.1044 -4.2545 27 1 1.1495 0.5389 2.5435 28 1 1.8327 -1.9681 3.6508 29 1 3.2856 -0.9399 3.6505 30 1 2.4894 1.6108 8.7631 31 1 3.4518 2.2353 4.5310 32 1 4.0968 1.7513 6.1179 33 1 4.2506 0.6563 4.7230 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327880611.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:36 Heat of formation + Delta-G solvation = 21.539015 kcal Electronic energy + Delta-G solvation = -18253.287526 eV Core-core repulsion = 15248.159892 eV Total energy + Delta-G solvation = -3005.127634 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -44.23128 -40.64943 -36.53364 -35.82544 -35.63355 -33.45632 -32.09067 -28.85411 -27.95403 -27.19362 -24.22636 -24.03252 -22.24408 -21.14013 -19.34239 -19.11421 -18.20671 -17.86919 -17.50982 -16.87375 -16.35517 -16.07983 -15.71576 -15.30869 -14.70847 -14.50866 -14.46913 -14.21467 -13.84813 -13.57775 -13.09971 -12.96286 -12.92865 -12.59379 -12.54894 -12.13886 -11.80506 -11.74756 -11.34678 -11.25299 -10.81083 -10.72346 -10.34045 -10.18263 -9.46220 -8.25063 -6.32208 -0.16877 0.08744 1.11776 1.35602 1.38588 1.41308 1.51667 1.68997 1.83395 2.36212 2.38137 2.94563 3.11624 3.52292 3.65784 4.05104 4.23428 4.26932 4.40864 4.48113 4.52215 4.63527 4.73204 4.75534 4.83867 5.12856 5.30395 5.43051 5.49212 5.58737 6.24800 6.56834 6.81133 7.27788 7.28589 7.41869 8.92748 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.030448 B = 0.004206 C = 0.004021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.383774 B = 6656.121240 C = 6961.889699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.006 4.006 3 H 0.076 0.924 4 C -0.507 4.507 5 H 0.025 0.975 6 C 0.007 3.993 7 N -0.951 5.951 8 Si 0.946 3.054 9 H -0.264 1.264 10 H -0.288 1.288 11 H -0.226 1.226 12 C 0.529 3.471 13 O -0.572 6.572 14 N -0.723 5.723 15 C 0.212 3.788 16 C 0.187 3.813 17 N -0.305 5.305 18 N -0.280 5.280 19 C 0.147 3.853 20 S 0.012 5.988 21 N -0.444 5.444 22 C 0.053 3.947 23 H 0.038 0.962 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.267 0.733 27 H 0.410 0.590 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.128 0.872 31 H 0.107 0.893 32 H 0.123 0.877 33 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.762 11.891 23.136 26.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.028 4.028 3 H 0.094 0.906 4 C -0.546 4.546 5 H 0.043 0.957 6 C -0.190 4.190 7 N -0.591 5.591 8 Si 0.768 3.232 9 H -0.189 1.189 10 H -0.214 1.214 11 H -0.149 1.149 12 C 0.318 3.682 13 O -0.449 6.449 14 N -0.378 5.378 15 C 0.086 3.914 16 C -0.083 4.083 17 N -0.149 5.149 18 N -0.124 5.124 19 C -0.229 4.229 20 S 0.161 5.839 21 N -0.136 5.136 22 C -0.088 4.088 23 H 0.057 0.943 24 H 0.076 0.924 25 H 0.087 0.913 26 H 0.076 0.924 27 H 0.246 0.754 28 H 0.111 0.889 29 H 0.121 0.879 30 H 0.092 0.908 31 H 0.125 0.875 32 H 0.141 0.859 33 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 1.098 11.362 23.700 26.306 hybrid contribution 1.330 -0.299 -0.923 1.646 sum 2.427 11.063 22.777 25.438 Atomic orbital electron populations 1.21851 0.94197 1.01201 1.01477 1.19317 0.95916 0.97198 0.90343 0.90647 1.20871 1.43524 0.93900 0.96264 0.95707 1.26075 0.93915 1.04595 0.94374 1.70076 1.47782 1.38432 1.02805 0.85766 0.80635 0.78502 0.78274 1.18850 1.21426 1.14899 1.21441 0.78381 0.83846 0.84580 1.90597 1.39181 1.28053 1.87074 1.45973 1.55070 1.32819 1.03984 1.19460 0.99963 0.95169 0.76795 1.24971 0.92152 0.92290 0.98838 1.74119 1.16091 1.20423 1.04224 1.74767 1.19928 1.04049 1.13700 1.26492 0.92813 1.05454 0.98132 1.87080 1.75519 1.05633 1.15636 1.47223 1.19483 1.26139 1.20756 1.22724 0.79584 1.00851 1.05609 0.94309 0.92392 0.91279 0.92407 0.75376 0.88892 0.87873 0.90806 0.87501 0.85883 0.87391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.82 9.12 71.98 0.66 -4.16 16 2 C -0.01 -0.26 2.30 -12.28 -0.03 -0.29 16 3 H 0.08 2.97 5.29 -2.39 -0.01 2.96 16 4 C -0.51 -29.19 8.36 25.60 0.21 -28.97 16 5 H 0.02 1.68 7.61 -2.91 -0.02 1.66 16 6 C 0.01 0.40 5.47 84.66 0.46 0.87 16 7 N -0.95 -59.67 13.96 21.45 0.30 -59.37 16 8 Si 0.95 40.81 26.99 68.60 1.85 42.66 16 9 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 10 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.23 -8.32 6.82 99.48 0.68 -7.64 16 12 C 0.53 21.55 7.15 87.66 0.63 22.18 16 13 O -0.57 -28.64 15.77 -3.04 -0.05 -28.69 16 14 N -0.72 -20.96 5.41 -466.80 -2.53 -23.49 16 15 C 0.21 5.32 6.04 85.63 0.52 5.84 16 16 C 0.19 4.46 7.44 137.63 1.02 5.49 16 17 N -0.31 -9.06 12.17 -49.53 -0.60 -9.67 16 18 N -0.28 -7.87 12.23 -56.85 -0.70 -8.57 16 19 C 0.15 3.00 8.37 179.55 1.50 4.51 16 20 S 0.01 0.15 25.78 -56.49 -1.46 -1.30 16 21 N -0.44 -7.97 3.21 -536.43 -1.72 -9.70 16 22 C 0.05 0.47 10.91 127.77 1.39 1.86 16 23 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 25 H 0.07 1.99 7.43 -2.39 -0.02 1.97 16 26 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 27 H 0.41 10.06 7.82 -92.71 -0.73 9.33 16 28 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 29 H 0.10 2.25 7.26 -2.39 -0.02 2.23 16 30 H 0.13 0.97 9.55 73.80 0.70 1.68 16 31 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.12 0.47 7.86 -2.38 -0.02 0.45 16 33 H 0.11 0.82 7.25 -2.39 -0.02 0.81 16 Total: -1.00 -80.15 302.67 2.59 -77.56 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 1.12 Total: 13.25 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: 6.37 Total: 7.31 kcal Atomic # 7 Polarization: -105.54 SS G_CDS: -5.25 Total: -110.79 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -0.05 Total: -28.69 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 1.85 Total: 42.66 kcal Atomic # 16 Polarization: 0.15 SS G_CDS: -1.46 Total: -1.30 kcal Total: -80.15 2.59 -77.56 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327880611.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.099 kcal (2) G-P(sol) polarization free energy of solvation -80.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.560 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds