Wall clock time and date at job start Mon Mar 30 2020 01:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46961 * 2 1 4 4 C 1.50699 * 109.47206 * 240.00081 * 2 1 3 5 5 H 1.07990 * 120.00216 * 239.99741 * 4 2 1 6 6 C 1.37886 * 119.99890 * 60.00005 * 4 2 1 7 7 N 1.31516 * 120.00086 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99905 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47239 * 89.99626 * 8 6 4 10 10 H 1.48497 * 109.47087 * 209.99868 * 8 6 4 11 11 H 1.48500 * 109.47087 * 329.99749 * 8 6 4 12 12 C 1.50697 * 109.47012 * 119.99898 * 2 1 3 13 13 O 1.20823 * 119.99695 * 120.00298 * 12 2 1 14 14 O 1.34228 * 120.00208 * 300.00091 * 12 2 1 15 15 C 1.45196 * 116.99871 * 180.02562 * 14 12 2 16 16 C 1.50707 * 109.47137 * 179.97438 * 15 14 12 17 17 C 1.38234 * 119.98427 * 0.02562 * 16 15 14 18 18 C 1.38182 * 120.04582 * 180.25726 * 17 16 15 19 19 C 1.38491 * 120.02870 * 359.44169 * 18 17 16 20 20 F 1.35101 * 120.01825 * 180.28454 * 19 18 17 21 21 C 1.38400 * 119.97385 * 0.55324 * 19 18 17 22 22 C 1.38443 * 119.98681 * 179.97438 * 16 15 14 23 23 F 1.35098 * 120.01594 * 0.04296 * 22 16 15 24 24 H 1.09004 * 109.47254 * 60.00414 * 1 2 3 25 25 H 1.09004 * 109.46961 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47423 * 300.00017 * 1 2 3 27 27 H 0.96998 * 119.99742 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.47245 * 60.00501 * 15 14 12 29 29 H 1.09002 * 109.47592 * 299.99734 * 15 14 12 30 30 H 1.08002 * 119.97328 * 359.97140 * 17 16 15 31 31 H 1.08008 * 119.98503 * 179.70400 * 18 17 16 32 32 H 1.08002 * 120.02913 * 179.74644 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9427 0.8297 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.3428 -2.1616 -4.4119 10 1 2.4865 -0.1413 -5.1123 11 1 3.6293 -1.7582 -3.7122 12 6 2.0323 -0.7104 1.2305 13 8 2.7270 -1.6927 1.1196 14 8 1.7080 -0.2518 2.4496 15 6 2.2277 -0.9857 3.5896 16 6 1.7636 -0.3285 4.8640 17 6 0.9656 0.7989 4.8090 18 6 0.5438 1.4055 5.9767 19 6 0.9106 0.8779 7.2035 20 9 0.4933 1.4679 8.3450 21 6 1.7095 -0.2509 7.2597 22 6 2.1359 -0.8549 6.0892 23 9 2.9156 -1.9568 6.1426 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 0.7087 1.1613 -3.4844 28 1 3.3171 -0.9845 3.5565 29 1 1.8642 -2.0128 3.5569 30 1 0.6755 1.2085 3.8527 31 1 -0.0757 2.2892 5.9326 32 1 1.9994 -0.6608 8.2160 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327996104.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:48 Heat of formation + Delta-G solvation = -160.651597 kcal Electronic energy + Delta-G solvation = -19778.210394 eV Core-core repulsion = 16146.756493 eV Total energy + Delta-G solvation = -3631.453901 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.22480 -49.20002 -39.88371 -38.87887 -35.89202 -33.94653 -31.99921 -31.01150 -30.56243 -26.48080 -25.25324 -23.67309 -22.91555 -21.77121 -19.87253 -18.40381 -17.39516 -16.75325 -16.46455 -16.32233 -16.07336 -15.79410 -15.64342 -15.42887 -15.09936 -14.58485 -14.31353 -13.85043 -13.37649 -13.02599 -12.69111 -12.42989 -12.02214 -11.72991 -11.62880 -11.46688 -11.09395 -10.83976 -10.73552 -10.45955 -10.30332 -10.09740 -9.28237 -9.22958 -9.10117 -8.78229 -8.49342 -6.15130 -4.20699 0.68773 0.80004 3.12801 3.19636 3.21967 3.28238 3.34199 3.42236 3.63404 4.17257 4.36426 4.41413 4.52166 4.65020 4.96950 5.18491 5.39257 5.39631 5.51078 5.63955 5.68688 5.90061 5.91625 6.18349 6.52642 6.60093 6.78884 6.81264 7.10047 7.37258 7.69065 7.89307 8.08498 8.74548 8.88292 9.45293 10.92219 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.038385 B = 0.003806 C = 0.003503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.285916 B = 7355.099970 C = 7990.480126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.059 3.941 3 H 0.066 0.934 4 C -0.514 4.514 5 H 0.076 0.924 6 C 0.063 3.937 7 N -0.892 5.892 8 Si 0.905 3.095 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.272 1.272 12 C 0.467 3.533 13 O -0.513 6.513 14 O -0.363 6.363 15 C 0.105 3.895 16 C -0.127 4.127 17 C -0.038 4.038 18 C -0.161 4.161 19 C 0.123 3.877 20 F -0.134 7.134 21 C -0.192 4.192 22 C 0.134 3.866 23 F -0.128 7.128 24 H 0.096 0.904 25 H 0.031 0.969 26 H 0.023 0.977 27 H 0.264 0.736 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.160 0.840 31 H 0.145 0.855 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.377 1.462 17.255 17.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.040 3.960 3 H 0.083 0.917 4 C -0.552 4.552 5 H 0.094 0.906 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.732 3.268 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.197 1.197 12 C 0.311 3.689 13 O -0.399 6.399 14 O -0.282 6.282 15 C 0.031 3.969 16 C -0.128 4.128 17 C -0.056 4.056 18 C -0.180 4.180 19 C 0.104 3.896 20 F -0.112 7.112 21 C -0.212 4.212 22 C 0.114 3.886 23 F -0.106 7.106 24 H 0.115 0.885 25 H 0.051 0.949 26 H 0.042 0.958 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.177 0.823 31 H 0.163 0.837 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -1.216 1.240 17.150 17.238 hybrid contribution 0.474 -0.683 -0.417 0.930 sum -0.742 0.557 16.733 16.758 Atomic orbital electron populations 1.21746 0.95513 1.00134 1.01769 1.18786 0.94894 0.97010 0.85316 0.91665 1.21132 1.32052 1.13311 0.88747 0.90610 1.24930 0.94858 0.94982 0.99141 1.69870 1.36448 1.22763 1.23936 0.86372 0.79475 0.79231 0.81701 1.20504 1.21108 1.19653 1.25428 0.76597 0.83311 0.83539 1.90519 1.36179 1.26647 1.86579 1.86549 1.70565 1.55759 1.15328 1.21354 0.99096 0.94946 0.81495 1.19864 1.01531 0.98475 0.92909 1.20955 0.92916 0.92415 0.99314 1.21299 1.03545 1.02555 0.90594 1.17333 0.97193 0.92853 0.82211 1.91525 1.88307 1.82912 1.48466 1.20915 1.03202 0.98109 0.98938 1.16968 0.93602 0.85346 0.92679 1.91540 1.71800 1.50113 1.97195 0.88504 0.94934 0.95762 0.92644 0.89855 0.89859 0.82277 0.83688 0.83349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.90 37.16 0.33 -2.69 16 2 C 0.06 1.44 2.74 -92.92 -0.25 1.18 16 3 H 0.07 1.63 8.14 -51.93 -0.42 1.21 16 4 C -0.51 -14.10 8.37 -34.44 -0.29 -14.38 16 5 H 0.08 2.17 6.76 -52.49 -0.35 1.82 16 6 C 0.06 1.68 5.30 -17.82 -0.09 1.59 16 7 N -0.89 -24.21 11.32 55.43 0.63 -23.58 16 8 Si 0.90 21.11 29.54 -169.99 -5.02 16.08 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 12 C 0.47 10.47 7.25 36.00 0.26 10.73 16 13 O -0.51 -12.69 15.21 -18.75 -0.29 -12.98 16 14 O -0.36 -6.65 8.59 -39.25 -0.34 -6.99 16 15 C 0.11 1.63 5.43 36.01 0.20 1.82 16 16 C -0.13 -1.63 5.89 -104.54 -0.62 -2.25 16 17 C -0.04 -0.44 9.38 -39.60 -0.37 -0.81 16 18 C -0.16 -1.61 10.02 -39.51 -0.40 -2.00 16 19 C 0.12 1.28 7.30 -39.43 -0.29 0.99 16 20 F -0.13 -1.40 17.27 2.25 0.04 -1.36 16 21 C -0.19 -1.97 10.01 -39.44 -0.39 -2.36 16 22 C 0.13 1.59 7.24 -39.43 -0.29 1.30 16 23 F -0.13 -1.60 16.80 2.25 0.04 -1.56 16 24 H 0.10 2.38 6.07 -51.93 -0.32 2.06 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.02 0.46 8.11 -51.93 -0.42 0.04 16 27 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 28 H 0.08 1.28 8.13 -51.93 -0.42 0.86 16 29 H 0.08 1.29 8.13 -51.93 -0.42 0.87 16 30 H 0.16 1.86 6.98 -52.49 -0.37 1.50 16 31 H 0.15 1.13 8.06 -52.48 -0.42 0.71 16 32 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 292.79 15.07 4.41 4.41 Total: -1.00 -28.52 292.79 -5.86 -34.38 By element: Atomic # 1 Polarization: 1.62 SS G_CDS: -3.13 Total: -1.51 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -2.20 Total: -6.89 kcal Atomic # 7 Polarization: -24.21 SS G_CDS: 0.63 Total: -23.58 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.62 Total: -19.97 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.08 Total: -2.92 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.52 -5.86 -34.38 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327996104.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.275 kcal (2) G-P(sol) polarization free energy of solvation -28.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds