Wall clock time and date at job start Mon Mar 30 2020 01:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46839 * 2 1 4 4 C 1.50697 * 109.47740 * 119.99803 * 2 1 3 5 5 H 1.07992 * 120.00027 * 119.99555 * 4 2 1 6 6 C 1.37887 * 119.99631 * 300.00555 * 4 2 1 7 7 N 1.31511 * 119.99642 * 179.97438 * 6 4 2 8 8 Si 1.86792 * 120.00112 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47357 * 90.00225 * 8 6 4 10 10 H 1.48497 * 109.47309 * 210.00048 * 8 6 4 11 11 H 1.48495 * 109.47382 * 330.00273 * 8 6 4 12 12 C 1.50695 * 109.47128 * 240.00265 * 2 1 3 13 13 O 1.20829 * 120.00014 * 239.99630 * 12 2 1 14 14 O 1.34231 * 120.00312 * 59.99628 * 12 2 1 15 15 C 1.45203 * 117.00073 * 180.02562 * 14 12 2 16 16 C 1.50698 * 109.46861 * 179.97438 * 15 14 12 17 17 C 1.38224 * 119.99194 * 359.97438 * 16 15 14 18 18 C 1.38186 * 120.05276 * 179.97438 * 17 16 15 19 19 C 1.38492 * 120.02401 * 359.97438 * 18 17 16 20 20 F 1.35107 * 120.01136 * 180.02562 * 19 18 17 21 21 C 1.38396 * 119.97620 * 359.79120 * 19 18 17 22 22 C 1.38445 * 119.94704 * 0.43906 * 21 19 18 23 23 F 1.35104 * 120.01039 * 179.81237 * 22 21 19 24 24 H 1.09002 * 109.46819 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47194 * 299.99530 * 1 2 3 26 26 H 1.08990 * 109.47622 * 60.00299 * 1 2 3 27 27 H 0.97002 * 119.99849 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47137 * 59.99661 * 15 14 12 29 29 H 1.09000 * 109.46927 * 299.99602 * 15 14 12 30 30 H 1.08000 * 119.97482 * 0.02562 * 17 16 15 31 31 H 1.07999 * 119.98603 * 180.02562 * 18 17 16 32 32 H 1.07999 * 120.03048 * 180.25272 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2392 2.4828 7 7 2.1374 -0.8594 3.5565 8 14 0.6258 1.2798 2.6541 9 1 -0.8020 0.8744 2.6994 10 1 0.9770 1.9954 3.9070 11 1 0.8489 2.1773 1.4923 12 6 2.0323 -0.7103 -1.2304 13 8 2.7270 -1.6927 -1.1196 14 8 1.7080 -0.2518 -2.4496 15 6 2.2268 -0.9863 -3.5897 16 6 1.7618 -0.3298 -4.8639 17 6 0.9639 0.7977 -4.8091 18 6 0.5373 1.4010 -5.9768 19 6 0.9092 0.8769 -7.2035 20 9 0.4923 1.4673 -8.3450 21 6 1.7120 -0.2491 -7.2598 22 6 2.1349 -0.8555 -6.0892 23 9 2.9155 -1.9569 -6.1426 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5137 -0.8899 27 1 1.9034 -0.5278 4.4375 28 1 1.8626 -2.0132 -3.5565 29 1 3.3163 -0.9859 -3.5569 30 1 0.6745 1.2078 -3.8529 31 1 -0.0857 2.2821 -5.9326 32 1 2.0058 -0.6561 -8.2159 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327996106.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:50 Heat of formation + Delta-G solvation = -150.520412 kcal Electronic energy + Delta-G solvation = -19846.933656 eV Core-core repulsion = 16215.919076 eV Total energy + Delta-G solvation = -3631.014580 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -49.27971 -49.25142 -40.02426 -38.97391 -36.03042 -34.05901 -32.09943 -31.29192 -31.06102 -26.63073 -25.25123 -23.85754 -23.11359 -21.85152 -19.89686 -18.46016 -17.49399 -17.02327 -16.63755 -16.43199 -16.15444 -15.91085 -15.80379 -15.50114 -15.17880 -14.64213 -14.43869 -13.99718 -13.62802 -13.08955 -12.81770 -12.60789 -12.35624 -12.05720 -11.84888 -11.72730 -11.48767 -11.12735 -10.75197 -10.49043 -10.41186 -9.74236 -9.36515 -9.34914 -9.23223 -8.84975 -8.69305 -6.16893 -4.20204 0.62111 0.73268 3.03479 3.06232 3.07442 3.18573 3.26341 3.31358 3.57215 4.10737 4.28295 4.34349 4.41694 4.57916 4.89748 5.12290 5.31558 5.31743 5.42148 5.55059 5.61505 5.72143 5.82854 6.00548 6.07758 6.23907 6.34477 6.45804 6.62224 6.96420 7.03606 7.41506 8.33700 8.60453 8.98376 9.39327 10.95391 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.032639 B = 0.004155 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.673524 B = 6736.813982 C = 7497.372692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.027 3.973 3 H 0.065 0.935 4 C -0.521 4.521 5 H 0.095 0.905 6 C 0.076 3.924 7 N -0.890 5.890 8 Si 0.884 3.116 9 H -0.275 1.275 10 H -0.293 1.293 11 H -0.264 1.264 12 C 0.475 3.525 13 O -0.497 6.497 14 O -0.365 6.365 15 C 0.107 3.893 16 C -0.127 4.127 17 C -0.039 4.039 18 C -0.161 4.161 19 C 0.124 3.876 20 F -0.133 7.133 21 C -0.191 4.191 22 C 0.135 3.865 23 F -0.127 7.127 24 H 0.058 0.942 25 H 0.052 0.948 26 H 0.044 0.956 27 H 0.267 0.733 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.158 0.842 31 H 0.145 0.855 32 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.043 5.076 -20.234 21.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.008 3.992 3 H 0.083 0.917 4 C -0.558 4.558 5 H 0.113 0.887 6 C -0.127 4.127 7 N -0.527 5.527 8 Si 0.713 3.287 9 H -0.202 1.202 10 H -0.221 1.221 11 H -0.189 1.189 12 C 0.318 3.682 13 O -0.382 6.382 14 O -0.284 6.284 15 C 0.032 3.968 16 C -0.128 4.128 17 C -0.057 4.057 18 C -0.180 4.180 19 C 0.105 3.895 20 F -0.112 7.112 21 C -0.211 4.211 22 C 0.115 3.885 23 F -0.105 7.105 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.077 0.923 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.176 0.824 31 H 0.163 0.837 32 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.787 4.718 -20.060 20.952 hybrid contribution -0.407 0.503 -0.119 0.658 sum -4.194 5.221 -20.179 21.261 Atomic orbital electron populations 1.22105 0.96343 1.01845 1.00075 1.19150 0.93958 0.97678 0.88456 0.91724 1.20909 1.33168 1.14649 0.87104 0.88737 1.24918 0.95625 0.96641 0.95525 1.69863 1.44854 1.39993 0.97989 0.86915 0.80746 0.83597 0.77424 1.20216 1.22051 1.18935 1.24586 0.77116 0.83306 0.83215 1.90573 1.35274 1.25950 1.86404 1.86498 1.70707 1.55880 1.15328 1.21382 0.99265 0.94948 0.81159 1.19843 1.01632 0.98472 0.92891 1.20919 0.93082 0.92498 0.99235 1.21290 1.03532 1.02598 0.90616 1.17334 0.97089 0.92869 0.82216 1.91531 1.88312 1.82869 1.48456 1.20929 1.03102 0.98060 0.98995 1.16965 0.93512 0.85335 0.92644 1.91550 1.71708 1.50103 1.97188 0.92306 0.92927 0.93678 0.92263 0.89632 0.89619 0.82413 0.83721 0.83280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.61 37.16 0.32 -2.60 16 2 C 0.03 0.61 2.33 -92.93 -0.22 0.40 16 3 H 0.07 1.41 7.20 -51.93 -0.37 1.04 16 4 C -0.52 -14.52 8.96 -34.44 -0.31 -14.83 16 5 H 0.09 2.99 7.00 -52.49 -0.37 2.62 16 6 C 0.08 2.12 5.45 -17.82 -0.10 2.02 16 7 N -0.89 -26.67 13.96 55.43 0.77 -25.89 16 8 Si 0.88 20.48 24.37 -169.99 -4.14 16.34 16 9 H -0.28 -6.16 6.87 56.52 0.39 -5.77 16 10 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.26 -5.68 6.53 56.52 0.37 -5.31 16 12 C 0.47 10.13 7.25 36.00 0.26 10.39 16 13 O -0.50 -12.11 15.21 -18.75 -0.29 -12.39 16 14 O -0.37 -6.21 8.59 -39.26 -0.34 -6.54 16 15 C 0.11 1.55 5.43 36.00 0.20 1.74 16 16 C -0.13 -1.53 5.89 -104.55 -0.62 -2.15 16 17 C -0.04 -0.42 9.38 -39.61 -0.37 -0.79 16 18 C -0.16 -1.49 10.02 -39.51 -0.40 -1.88 16 19 C 0.12 1.21 7.30 -39.43 -0.29 0.92 16 20 F -0.13 -1.32 17.27 2.25 0.04 -1.28 16 21 C -0.19 -1.85 10.01 -39.45 -0.39 -2.25 16 22 C 0.14 1.52 7.25 -39.43 -0.29 1.23 16 23 F -0.13 -1.52 16.80 2.25 0.04 -1.49 16 24 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 25 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 26 H 0.04 0.74 8.11 -51.93 -0.42 0.31 16 27 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.09 1.25 8.13 -51.93 -0.42 0.83 16 29 H 0.09 1.25 8.13 -51.93 -0.42 0.83 16 30 H 0.16 1.65 6.98 -52.49 -0.37 1.28 16 31 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 32 H 0.15 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 285.97 15.07 4.31 4.31 Total: -1.00 -30.51 285.97 -4.80 -35.30 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -2.99 Total: -0.55 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -2.20 Total: -7.80 kcal Atomic # 7 Polarization: -26.67 SS G_CDS: 0.77 Total: -25.89 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -0.62 Total: -18.94 kcal Atomic # 9 Polarization: -2.85 SS G_CDS: 0.08 Total: -2.77 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.14 Total: 16.34 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.51 -4.80 -35.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327996106.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.216 kcal (2) G-P(sol) polarization free energy of solvation -30.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds