Wall clock time and date at job start Mon Mar 30 2020 01:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46839 * 2 1 4 4 C 1.50697 * 109.47740 * 119.99803 * 2 1 3 5 5 H 1.07992 * 120.00027 * 119.99555 * 4 2 1 6 6 C 1.37887 * 119.99631 * 300.00555 * 4 2 1 7 7 N 1.31511 * 119.99642 * 179.97438 * 6 4 2 8 8 Si 1.86792 * 120.00112 * 359.97438 * 6 4 2 9 9 H 1.48497 * 109.47357 * 90.00225 * 8 6 4 10 10 H 1.48497 * 109.47309 * 210.00048 * 8 6 4 11 11 H 1.48495 * 109.47382 * 330.00273 * 8 6 4 12 12 C 1.50695 * 109.47128 * 240.00265 * 2 1 3 13 13 O 1.20829 * 120.00014 * 239.99630 * 12 2 1 14 14 O 1.34231 * 120.00312 * 59.99628 * 12 2 1 15 15 C 1.45203 * 117.00073 * 180.02562 * 14 12 2 16 16 C 1.50698 * 109.46861 * 179.97438 * 15 14 12 17 17 C 1.38224 * 119.99194 * 359.97438 * 16 15 14 18 18 C 1.38186 * 120.05276 * 179.97438 * 17 16 15 19 19 C 1.38492 * 120.02401 * 359.97438 * 18 17 16 20 20 F 1.35107 * 120.01136 * 180.02562 * 19 18 17 21 21 C 1.38396 * 119.97620 * 359.79120 * 19 18 17 22 22 C 1.38445 * 119.94704 * 0.43906 * 21 19 18 23 23 F 1.35104 * 120.01039 * 179.81237 * 22 21 19 24 24 H 1.09002 * 109.46819 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.47194 * 299.99530 * 1 2 3 26 26 H 1.08990 * 109.47622 * 60.00299 * 1 2 3 27 27 H 0.97002 * 119.99849 * 179.97438 * 7 6 4 28 28 H 1.09002 * 109.47137 * 59.99661 * 15 14 12 29 29 H 1.09000 * 109.46927 * 299.99602 * 15 14 12 30 30 H 1.08000 * 119.97482 * 0.02562 * 17 16 15 31 31 H 1.07999 * 119.98603 * 180.02562 * 18 17 16 32 32 H 1.07999 * 120.03048 * 180.25272 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7103 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2392 2.4828 7 7 2.1374 -0.8594 3.5565 8 14 0.6258 1.2798 2.6541 9 1 -0.8020 0.8744 2.6994 10 1 0.9770 1.9954 3.9070 11 1 0.8489 2.1773 1.4923 12 6 2.0323 -0.7103 -1.2304 13 8 2.7270 -1.6927 -1.1196 14 8 1.7080 -0.2518 -2.4496 15 6 2.2268 -0.9863 -3.5897 16 6 1.7618 -0.3298 -4.8639 17 6 0.9639 0.7977 -4.8091 18 6 0.5373 1.4010 -5.9768 19 6 0.9092 0.8769 -7.2035 20 9 0.4923 1.4673 -8.3450 21 6 1.7120 -0.2491 -7.2598 22 6 2.1349 -0.8555 -6.0892 23 9 2.9155 -1.9569 -6.1426 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5137 -0.8899 27 1 1.9034 -0.5278 4.4375 28 1 1.8626 -2.0132 -3.5565 29 1 3.3163 -0.9859 -3.5569 30 1 0.6745 1.2078 -3.8529 31 1 -0.0857 2.2821 -5.9326 32 1 2.0058 -0.6561 -8.2159 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327996106.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:50 Heat of formation + Delta-G solvation = -168.444021 kcal Electronic energy + Delta-G solvation = -19847.710882 eV Core-core repulsion = 16215.919076 eV Total energy + Delta-G solvation = -3631.791806 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.14992 -50.03562 -41.55221 -39.93697 -37.57284 -35.96198 -33.55731 -32.82161 -31.85912 -27.76030 -27.15504 -25.27162 -24.17527 -22.82269 -21.53602 -19.29767 -19.02327 -18.44300 -17.94140 -17.70337 -17.58042 -16.98498 -16.85510 -16.51487 -16.38930 -15.94101 -15.47084 -15.21346 -14.98973 -14.55277 -14.27819 -14.04542 -13.69588 -13.35775 -13.05017 -12.88720 -12.75167 -12.58943 -12.42200 -12.21153 -11.90160 -11.49152 -11.27406 -11.11097 -10.76021 -10.13289 -9.71240 -8.30285 -6.41274 -0.20764 -0.04687 1.32791 1.39258 1.43297 1.54464 1.61862 2.25895 2.34013 2.76497 3.03355 3.25402 3.39958 3.57323 3.85932 3.99143 4.05168 4.11311 4.31909 4.39034 4.57489 4.66254 4.74897 4.77148 4.88230 4.98237 5.02181 5.15621 5.36892 5.41206 5.48620 5.67462 6.21873 6.71305 6.92942 7.23817 8.86611 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.032639 B = 0.004155 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.673524 B = 6736.813982 C = 7497.372692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.021 3.979 3 H 0.085 0.915 4 C -0.536 4.536 5 H 0.035 0.965 6 C 0.014 3.986 7 N -0.947 5.947 8 Si 0.956 3.044 9 H -0.257 1.257 10 H -0.298 1.298 11 H -0.227 1.227 12 C 0.482 3.518 13 O -0.539 6.539 14 O -0.345 6.345 15 C 0.105 3.895 16 C -0.139 4.139 17 C -0.043 4.043 18 C -0.148 4.148 19 C 0.124 3.876 20 F -0.132 7.132 21 C -0.184 4.184 22 C 0.125 3.875 23 F -0.136 7.136 24 H 0.049 0.951 25 H 0.052 0.948 26 H 0.090 0.910 27 H 0.270 0.730 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.164 0.836 31 H 0.172 0.828 32 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.195 7.867 -22.359 24.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.002 3.998 3 H 0.103 0.897 4 C -0.573 4.573 5 H 0.053 0.947 6 C -0.183 4.183 7 N -0.586 5.586 8 Si 0.780 3.220 9 H -0.183 1.183 10 H -0.226 1.226 11 H -0.150 1.150 12 C 0.326 3.674 13 O -0.428 6.428 14 O -0.262 6.262 15 C 0.032 3.968 16 C -0.140 4.140 17 C -0.060 4.060 18 C -0.167 4.167 19 C 0.105 3.895 20 F -0.111 7.111 21 C -0.204 4.204 22 C 0.105 3.895 23 F -0.115 7.115 24 H 0.068 0.932 25 H 0.070 0.930 26 H 0.109 0.891 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.181 0.819 31 H 0.190 0.810 32 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -5.952 7.520 -22.241 24.220 hybrid contribution 0.334 -0.439 0.423 0.695 sum -5.617 7.081 -21.818 23.616 Atomic orbital electron populations 1.22030 0.93443 1.02147 1.02214 1.19096 0.96173 0.97717 0.86810 0.89734 1.21046 1.32733 1.13467 0.90078 0.94665 1.25956 0.97149 1.00645 0.94581 1.70049 1.47054 1.42608 0.98866 0.85761 0.78936 0.78950 0.78374 1.18276 1.22600 1.15014 1.24327 0.76242 0.82432 0.84374 1.90570 1.37171 1.27808 1.87210 1.86430 1.69954 1.55321 1.14500 1.21503 0.99116 0.94996 0.81223 1.19686 1.03170 0.99532 0.91651 1.20995 0.92895 0.92012 1.00143 1.21515 1.02693 1.02806 0.89647 1.17426 0.96859 0.92741 0.82482 1.91542 1.88248 1.82799 1.48469 1.21088 1.02361 0.97765 0.99163 1.17049 0.94022 0.85468 0.92931 1.91529 1.72077 1.50642 1.97234 0.93151 0.92980 0.89100 0.92087 0.90159 0.90200 0.81851 0.81029 0.81453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.17 8.61 71.98 0.62 -4.55 16 2 C 0.02 0.94 2.33 -12.29 -0.03 0.91 16 3 H 0.09 3.43 7.20 -2.39 -0.02 3.41 16 4 C -0.54 -30.75 8.96 25.60 0.23 -30.52 16 5 H 0.04 2.38 7.00 -2.91 -0.02 2.36 16 6 C 0.01 0.81 5.45 84.66 0.46 1.27 16 7 N -0.95 -58.83 13.96 21.45 0.30 -58.53 16 8 Si 0.96 40.93 24.37 68.60 1.67 42.60 16 9 H -0.26 -10.25 6.87 99.48 0.68 -9.57 16 10 H -0.30 -12.96 7.11 99.48 0.71 -12.25 16 11 H -0.23 -8.34 6.53 99.48 0.65 -7.69 16 12 C 0.48 20.46 7.25 71.23 0.52 20.97 16 13 O -0.54 -27.30 15.21 21.96 0.33 -26.96 16 14 O -0.34 -11.17 8.59 -51.43 -0.44 -11.61 16 15 C 0.11 3.01 5.43 71.24 0.39 3.40 16 16 C -0.14 -3.13 5.89 -19.82 -0.12 -3.25 16 17 C -0.04 -0.78 9.38 22.25 0.21 -0.57 16 18 C -0.15 -2.17 10.02 22.32 0.22 -1.94 16 19 C 0.12 2.01 7.30 22.37 0.16 2.18 16 20 F -0.13 -2.19 17.27 44.97 0.78 -1.41 16 21 C -0.18 -3.11 10.01 22.36 0.22 -2.89 16 22 C 0.12 2.62 7.25 22.37 0.16 2.78 16 23 F -0.14 -3.19 16.80 44.97 0.76 -2.44 16 24 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 25 H 0.05 1.92 3.27 -2.39 -0.01 1.91 16 26 H 0.09 2.50 8.11 -2.39 -0.02 2.48 16 27 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 28 H 0.08 2.37 8.13 -2.39 -0.02 2.35 16 29 H 0.08 2.36 8.13 -2.39 -0.02 2.34 16 30 H 0.16 2.80 6.98 -2.91 -0.02 2.78 16 31 H 0.17 1.59 8.06 -2.91 -0.02 1.56 16 32 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 Total: -1.00 -69.66 285.97 7.52 -62.13 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: 1.08 Total: 8.43 kcal Atomic # 6 Polarization: -15.25 SS G_CDS: 3.05 Total: -12.20 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: 0.30 Total: -58.53 kcal Atomic # 8 Polarization: -38.47 SS G_CDS: -0.11 Total: -38.57 kcal Atomic # 9 Polarization: -5.39 SS G_CDS: 1.53 Total: -3.85 kcal Atomic # 14 Polarization: 40.93 SS G_CDS: 1.67 Total: 42.60 kcal Total: -69.66 7.52 -62.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327996106.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.311 kcal (2) G-P(sol) polarization free energy of solvation -69.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds