Wall clock time and date at job start Mon Mar 30 2020 01:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.36940 * 120.00565 * 275.00309 * 4 2 1 6 6 H 1.08004 * 119.99402 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00150 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00111 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99847 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47120 * 59.99555 * 9 7 5 11 11 H 1.48500 * 109.47078 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46925 * 300.00019 * 9 7 5 13 13 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 14 14 H 1.09002 * 109.47103 * 300.00247 * 13 2 1 15 15 C 1.52997 * 109.47482 * 179.97438 * 13 2 1 16 16 N 1.46510 * 109.46966 * 59.99937 * 13 2 1 17 17 C 1.34774 * 119.99612 * 205.00152 * 16 13 2 18 18 O 1.21600 * 120.00427 * 0.02562 * 17 16 13 19 19 C 1.47449 * 119.99599 * 180.02562 * 17 16 13 20 20 C 1.37983 * 124.15585 * 179.73112 * 19 17 16 21 21 S 1.72106 * 104.03435 * 179.89547 * 20 19 17 22 22 N 1.56404 * 96.15224 * 0.32331 * 21 20 19 23 23 N 1.27422 * 109.87934 * 359.80054 * 22 21 20 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 28 28 H 0.96997 * 119.99796 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.47289 * 60.00300 * 15 13 2 30 30 H 1.09004 * 109.47261 * 180.02562 * 15 13 2 31 31 H 1.09002 * 109.47153 * 300.00216 * 15 13 2 32 32 H 0.96995 * 119.99596 * 25.00171 * 16 13 2 33 33 H 1.07997 * 127.98103 * 359.95952 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8926 1.0406 2.4241 7 6 2.6113 -0.6619 3.5094 8 7 2.9234 -1.9392 3.4505 9 14 2.7890 0.2698 5.1186 10 1 1.4665 0.8066 5.5284 11 1 3.2981 -0.6485 6.1687 12 1 3.7443 1.3923 4.9378 13 6 2.0400 -0.7212 -1.2491 14 1 1.6767 -1.7489 -1.2491 15 6 3.5700 -0.7207 -1.2494 16 7 1.5517 -0.0306 -2.4454 17 6 1.4230 -0.7031 -3.6063 18 8 1.7118 -1.8830 -3.6607 19 6 0.9321 -0.0079 -4.8104 20 6 0.7728 -0.6099 -6.0417 21 16 0.1807 0.6528 -7.0502 22 7 0.1826 1.7624 -5.9480 23 7 0.5940 1.2762 -4.8443 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 2.2490 -1.6317 1.1527 28 1 3.2468 -2.3964 4.2425 29 1 3.9338 -1.2343 -0.3595 30 1 3.9334 -1.2342 -2.1397 31 1 3.9330 0.3071 -1.2497 32 1 1.3210 0.9105 -2.4018 33 1 0.9725 -1.6367 -6.3103 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329089475.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:32 Heat of formation + Delta-G solvation = 44.464797 kcal Electronic energy + Delta-G solvation = -18186.528684 eV Core-core repulsion = 15182.395186 eV Total energy + Delta-G solvation = -3004.133498 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.29115 -39.40687 -36.79373 -34.00700 -32.49661 -31.66884 -29.59502 -28.40039 -27.28833 -24.35945 -23.97272 -22.24626 -20.92290 -20.11219 -19.16519 -17.51096 -16.75781 -16.24959 -16.05981 -15.40277 -14.73757 -14.54333 -14.07184 -13.64648 -13.35229 -13.06653 -12.89193 -12.45422 -12.36721 -11.88156 -11.71177 -11.20365 -10.97012 -10.82271 -10.71173 -10.63795 -10.35416 -10.25008 -10.21283 -10.19511 -9.90313 -9.68309 -9.05655 -8.82039 -6.99769 -5.77803 -3.07482 -0.23002 0.61962 1.23662 1.25183 3.09219 3.10425 3.43989 3.48703 3.49422 3.64110 4.43229 4.58800 4.72395 5.07999 5.29160 5.48386 5.66052 5.73339 5.87968 6.10711 6.16694 6.35714 6.41144 6.51201 6.59572 6.80243 6.88786 7.01922 7.17892 7.59015 7.68573 8.13870 8.39829 9.51296 10.05900 10.41279 11.44521 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.047471 B = 0.003596 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.690981 B = 7784.847500 C = 8077.257184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.169 3.831 3 H 0.053 0.947 4 N -0.717 5.717 5 C -0.240 4.240 6 H 0.071 0.929 7 C -0.011 4.011 8 N -0.931 5.931 9 Si 0.907 3.093 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C 0.134 3.866 14 H 0.089 0.911 15 C -0.153 4.153 16 N -0.694 5.694 17 C 0.600 3.400 18 O -0.527 6.527 19 C -0.017 4.017 20 C -0.236 4.236 21 S 0.452 5.548 22 N -0.290 5.290 23 N -0.209 5.209 24 H 0.047 0.953 25 H 0.036 0.964 26 H 0.056 0.944 27 H 0.385 0.615 28 H 0.256 0.744 29 H 0.083 0.917 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.408 0.592 33 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.805 4.026 -22.020 22.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.058 3.942 3 H 0.071 0.929 4 N -0.360 5.360 5 C -0.371 4.371 6 H 0.089 0.911 7 C -0.207 4.207 8 N -0.579 5.579 9 Si 0.738 3.262 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C 0.030 3.970 14 H 0.107 0.893 15 C -0.211 4.211 16 N -0.344 5.344 17 C 0.380 3.620 18 O -0.403 6.403 19 C -0.165 4.165 20 C -0.393 4.393 21 S 0.587 5.413 22 N -0.270 5.270 23 N -0.080 5.080 24 H 0.066 0.934 25 H 0.055 0.945 26 H 0.075 0.925 27 H 0.220 0.780 28 H 0.066 0.934 29 H 0.102 0.898 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.243 0.757 33 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -5.179 4.955 -22.569 23.680 hybrid contribution 0.533 -0.620 1.770 1.950 sum -4.646 4.335 -20.799 21.748 Atomic orbital electron populations 1.22460 0.98953 1.01124 1.00048 1.20388 0.92208 0.95687 0.85922 0.92927 1.42275 1.78248 1.10665 1.04763 1.19160 1.36962 0.93891 0.87079 0.91147 1.24733 1.01993 0.95959 0.98031 1.69650 1.50607 1.08610 1.29069 0.86270 0.77774 0.78593 0.83533 1.21285 1.21724 1.21255 1.21488 0.94722 0.97658 0.83159 0.89309 1.22065 0.94535 1.02047 1.02500 1.45965 1.64800 1.14558 1.09043 1.16635 0.78267 0.85718 0.81357 1.90844 1.50678 1.14514 1.84215 1.22847 1.06253 0.90191 0.97164 1.28890 1.04807 1.09076 0.96554 1.81511 1.44500 0.94116 1.21145 1.78679 1.21932 1.25749 1.00638 1.71544 1.10435 1.10345 1.15644 0.93394 0.94454 0.92512 0.78030 0.93397 0.89798 0.93374 0.92859 0.75664 0.77428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.99 9.33 37.16 0.35 -2.64 16 2 C 0.17 3.25 2.52 -67.94 -0.17 3.07 16 3 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 4 N -0.72 -17.36 4.43 -53.43 -0.24 -17.60 16 5 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 6 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 7 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 8 N -0.93 -27.69 13.06 55.49 0.72 -26.97 16 9 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 10 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.13 2.30 2.21 -67.93 -0.15 2.15 16 14 H 0.09 1.67 7.58 -51.93 -0.39 1.27 16 15 C -0.15 -2.64 9.33 37.16 0.35 -2.29 16 16 N -0.69 -10.17 4.38 -54.87 -0.24 -10.41 16 17 C 0.60 8.88 7.78 -12.51 -0.10 8.79 16 18 O -0.53 -9.15 16.46 5.28 0.09 -9.07 16 19 C -0.02 -0.21 6.87 -83.78 -0.58 -0.78 16 20 C -0.24 -2.06 11.21 30.64 0.34 -1.72 16 21 S 0.45 3.07 23.38 -107.50 -2.51 0.55 16 22 N -0.29 -3.16 12.49 60.35 0.75 -2.41 16 23 N -0.21 -2.61 11.24 32.74 0.37 -2.24 16 24 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.04 0.57 7.45 -51.93 -0.39 0.18 16 26 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 27 H 0.39 9.99 7.59 -40.82 -0.31 9.68 16 28 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 29 H 0.08 1.63 7.45 -51.93 -0.39 1.24 16 30 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.41 5.43 7.97 -40.82 -0.33 5.10 16 33 H 0.21 1.37 8.06 -52.49 -0.42 0.95 16 LS Contribution 303.84 15.07 4.58 4.58 Total: -1.00 -31.57 303.84 -5.59 -37.16 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -3.88 Total: 9.75 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -0.20 Total: -0.46 kcal Atomic # 7 Polarization: -61.00 SS G_CDS: 1.37 Total: -59.63 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.07 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Atomic # 16 Polarization: 3.07 SS G_CDS: -2.51 Total: 0.55 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -31.57 -5.59 -37.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329089475.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.624 kcal (2) G-P(sol) polarization free energy of solvation -31.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds