Wall clock time and date at job start Mon Mar 30 2020 01:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46497 * 109.47188 * 119.99573 * 2 1 3 5 5 C 1.36940 * 120.00565 * 275.00309 * 4 2 1 6 6 H 1.08004 * 119.99402 * 359.97438 * 5 4 2 7 7 C 1.38815 * 120.00150 * 179.97438 * 5 4 2 8 8 N 1.31618 * 120.00111 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99847 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47120 * 59.99555 * 9 7 5 11 11 H 1.48500 * 109.47078 * 180.02562 * 9 7 5 12 12 H 1.48505 * 109.46925 * 300.00019 * 9 7 5 13 13 C 1.52992 * 109.47482 * 239.99783 * 2 1 3 14 14 H 1.09002 * 109.47103 * 300.00247 * 13 2 1 15 15 C 1.52997 * 109.47482 * 179.97438 * 13 2 1 16 16 N 1.46510 * 109.46966 * 59.99937 * 13 2 1 17 17 C 1.34774 * 119.99612 * 205.00152 * 16 13 2 18 18 O 1.21600 * 120.00427 * 0.02562 * 17 16 13 19 19 C 1.47449 * 119.99599 * 180.02562 * 17 16 13 20 20 C 1.37983 * 124.15585 * 179.73112 * 19 17 16 21 21 S 1.72106 * 104.03435 * 179.89547 * 20 19 17 22 22 N 1.56404 * 96.15224 * 0.32331 * 21 20 19 23 23 N 1.27422 * 109.87934 * 359.80054 * 22 21 20 24 24 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 26 26 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 27 27 H 0.97006 * 119.99921 * 94.99902 * 4 2 1 28 28 H 0.96997 * 119.99796 * 179.97438 * 8 7 5 29 29 H 1.09001 * 109.47289 * 60.00300 * 15 13 2 30 30 H 1.09004 * 109.47261 * 180.02562 * 15 13 2 31 31 H 1.09002 * 109.47153 * 300.00216 * 15 13 2 32 32 H 0.96995 * 119.99596 * 25.00171 * 16 13 2 33 33 H 1.07997 * 127.98103 * 359.95952 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1491 -0.0074 2.3758 6 1 1.8926 1.0406 2.4241 7 6 2.6113 -0.6619 3.5094 8 7 2.9234 -1.9392 3.4505 9 14 2.7890 0.2698 5.1186 10 1 1.4665 0.8066 5.5284 11 1 3.2981 -0.6485 6.1687 12 1 3.7443 1.3923 4.9378 13 6 2.0400 -0.7212 -1.2491 14 1 1.6767 -1.7489 -1.2491 15 6 3.5700 -0.7207 -1.2494 16 7 1.5517 -0.0306 -2.4454 17 6 1.4230 -0.7031 -3.6063 18 8 1.7118 -1.8830 -3.6607 19 6 0.9321 -0.0079 -4.8104 20 6 0.7728 -0.6099 -6.0417 21 16 0.1807 0.6528 -7.0502 22 7 0.1826 1.7624 -5.9480 23 7 0.5940 1.2762 -4.8443 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 0.5139 0.8900 27 1 2.2490 -1.6317 1.1527 28 1 3.2468 -2.3964 4.2425 29 1 3.9338 -1.2343 -0.3595 30 1 3.9334 -1.2342 -2.1397 31 1 3.9330 0.3071 -1.2497 32 1 1.3210 0.9105 -2.4018 33 1 0.9725 -1.6367 -6.3103 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329089475.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:16:31 Heat of formation + Delta-G solvation = 20.997463 kcal Electronic energy + Delta-G solvation = -18187.546304 eV Core-core repulsion = 15182.395186 eV Total energy + Delta-G solvation = -3005.151118 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.15388 -40.58238 -38.30435 -35.66448 -33.72009 -33.09203 -31.04627 -30.15492 -28.09967 -25.91984 -25.49460 -23.63389 -21.84716 -21.56354 -20.26880 -19.37173 -17.76734 -17.31256 -17.09215 -16.50468 -16.43747 -15.79600 -15.41136 -15.33220 -14.89756 -14.68772 -14.09837 -13.66485 -13.49652 -13.26235 -13.02080 -12.91852 -12.70936 -12.60688 -12.28883 -12.19683 -11.76114 -11.54615 -11.41867 -11.23935 -11.15387 -10.96950 -10.88501 -10.20707 -9.01237 -7.91081 -5.20122 -0.92495 -0.03879 0.32590 0.55194 1.50090 1.52462 1.58291 1.97949 2.02117 2.59474 2.74957 3.42790 3.63835 3.73203 3.87733 4.02787 4.17674 4.32999 4.38457 4.57932 4.75101 4.86841 4.92820 5.02601 5.13031 5.30646 5.43498 5.49179 5.56225 6.24105 6.29678 6.56378 6.99343 7.36567 8.08749 8.33130 9.32076 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.047471 B = 0.003596 C = 0.003466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.690981 B = 7784.847500 C = 8077.257184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.168 3.832 3 H 0.059 0.941 4 N -0.728 5.728 5 C -0.236 4.236 6 H 0.078 0.922 7 C -0.073 4.073 8 N -0.969 5.969 9 Si 0.971 3.029 10 H -0.279 1.279 11 H -0.299 1.299 12 H -0.278 1.278 13 C 0.149 3.851 14 H 0.071 0.929 15 C -0.144 4.144 16 N -0.688 5.688 17 C 0.603 3.397 18 O -0.558 6.558 19 C -0.043 4.043 20 C -0.237 4.237 21 S 0.568 5.432 22 N -0.331 5.331 23 N -0.233 5.233 24 H 0.037 0.963 25 H 0.066 0.934 26 H 0.044 0.956 27 H 0.374 0.626 28 H 0.250 0.750 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.416 0.584 33 H 0.228 0.772 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.597 5.342 -24.184 25.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.059 3.941 3 H 0.077 0.923 4 N -0.369 5.369 5 C -0.368 4.368 6 H 0.096 0.904 7 C -0.265 4.265 8 N -0.619 5.619 9 Si 0.800 3.200 10 H -0.206 1.206 11 H -0.225 1.225 12 H -0.204 1.204 13 C 0.044 3.956 14 H 0.089 0.911 15 C -0.202 4.202 16 N -0.339 5.339 17 C 0.385 3.615 18 O -0.436 6.436 19 C -0.191 4.191 20 C -0.394 4.394 21 S 0.703 5.297 22 N -0.312 5.312 23 N -0.103 5.103 24 H 0.056 0.944 25 H 0.085 0.915 26 H 0.063 0.937 27 H 0.206 0.794 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.253 0.747 33 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -6.001 6.337 -24.771 26.263 hybrid contribution 0.709 -1.012 2.171 2.498 sum -5.291 5.325 -22.600 23.814 Atomic orbital electron populations 1.22306 0.97610 1.00723 1.00880 1.20533 0.92920 0.95595 0.85089 0.92320 1.42420 1.78482 1.10256 1.05726 1.19551 1.35058 0.94258 0.87954 0.90366 1.25505 1.02928 0.96803 1.01297 1.69812 1.52507 1.10173 1.29451 0.85256 0.77893 0.77314 0.79543 1.20562 1.22521 1.20366 1.21058 0.94514 0.96613 0.83439 0.91093 1.21946 0.94588 1.02254 1.01457 1.45770 1.64904 1.14804 1.08425 1.16914 0.77337 0.85373 0.81875 1.90823 1.52030 1.15874 1.84851 1.22467 1.08686 0.90854 0.97073 1.29283 1.03301 1.10722 0.96082 1.81123 1.40615 0.90684 1.17282 1.78311 1.23125 1.28220 1.01560 1.71581 1.11421 1.10442 1.16809 0.94406 0.91469 0.93727 0.79421 0.94109 0.92384 0.92780 0.91962 0.74668 0.75513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.49 9.33 71.98 0.67 -4.82 16 2 C 0.17 6.42 2.52 44.99 0.11 6.53 16 3 H 0.06 2.20 8.08 -2.39 -0.02 2.18 16 4 N -0.73 -35.75 4.43 -322.95 -1.43 -37.18 16 5 C -0.24 -12.80 9.93 84.03 0.83 -11.96 16 6 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 7 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 8 N -0.97 -58.94 13.06 21.65 0.28 -58.66 16 9 Si 0.97 45.80 29.55 68.60 2.03 47.82 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 13 C 0.15 5.12 2.21 44.99 0.10 5.22 16 14 H 0.07 2.73 7.58 -2.39 -0.02 2.71 16 15 C -0.14 -5.00 9.33 71.98 0.67 -4.33 16 16 N -0.69 -19.70 4.38 -445.78 -1.95 -21.66 16 17 C 0.60 17.41 7.78 86.67 0.67 18.09 16 18 O -0.56 -19.23 16.46 -4.03 -0.07 -19.29 16 19 C -0.04 -0.98 6.87 41.36 0.28 -0.69 16 20 C -0.24 -3.50 11.21 67.76 0.76 -2.74 16 21 S 0.57 5.71 23.38 -56.49 -1.32 4.39 16 22 N -0.33 -6.47 12.49 37.02 0.46 -6.01 16 23 N -0.23 -5.45 11.24 -50.34 -0.57 -6.02 16 24 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.07 1.96 7.45 -2.39 -0.02 1.94 16 26 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 27 H 0.37 19.99 7.59 -92.70 -0.70 19.29 16 28 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 29 H 0.06 2.32 7.45 -2.39 -0.02 2.30 16 30 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 31 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.42 10.60 7.97 -92.71 -0.74 9.86 16 33 H 0.23 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -68.77 303.84 1.72 -67.05 By element: Atomic # 1 Polarization: 28.21 SS G_CDS: -0.29 Total: 27.92 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: 4.57 Total: 1.63 kcal Atomic # 7 Polarization: -126.32 SS G_CDS: -3.20 Total: -129.52 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.07 Total: -19.29 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.82 kcal Atomic # 16 Polarization: 5.71 SS G_CDS: -1.32 Total: 4.39 kcal Total: -68.77 1.72 -67.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329089475.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.049 kcal (2) G-P(sol) polarization free energy of solvation -68.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds