Wall clock time and date at job start Mon Mar 30 2020 01:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08990 * 109.47597 * 2 1 4 4 C 1.53001 * 109.47236 * 239.99727 * 2 1 3 5 5 N 1.46494 * 109.47303 * 185.00280 * 4 2 1 6 6 C 1.34783 * 119.99953 * 180.02562 * 5 4 2 7 7 O 1.21565 * 119.99847 * 359.97438 * 6 5 4 8 8 C 1.47752 * 119.99790 * 179.97438 * 6 5 4 9 9 C 1.39354 * 124.11364 * 179.72148 * 8 6 5 10 10 N 1.30091 * 112.14259 * 179.85405 * 9 8 6 11 11 S 1.55923 * 108.75441 * 0.39985 * 10 9 8 12 12 N 1.31486 * 124.11877 * 0.02855 * 8 6 5 13 13 N 1.46507 * 109.47093 * 120.00016 * 2 1 3 14 14 C 1.46498 * 119.99821 * 59.99701 * 13 2 1 15 15 C 1.36934 * 119.99913 * 239.99672 * 13 2 1 16 16 H 1.08005 * 120.00082 * 20.36577 * 15 13 2 17 17 C 1.38809 * 120.00201 * 200.36060 * 15 13 2 18 18 N 1.31624 * 119.99689 * 14.99990 * 17 15 13 19 19 Si 1.86800 * 120.00346 * 194.99742 * 17 15 13 20 20 H 1.48503 * 109.46776 * 85.00209 * 19 17 15 21 21 H 1.48504 * 109.47050 * 205.00320 * 19 17 15 22 22 H 1.48502 * 109.47068 * 325.00584 * 19 17 15 23 23 H 1.09000 * 109.47131 * 60.00124 * 1 2 3 24 24 H 1.09003 * 109.46789 * 299.99800 * 1 2 3 25 25 H 1.09005 * 109.47149 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47206 * 305.00472 * 4 2 1 27 27 H 1.09002 * 109.47163 * 64.99591 * 4 2 1 28 28 H 0.96999 * 120.00218 * 359.97438 * 5 4 2 29 29 H 1.08002 * 123.93035 * 0.02562 * 9 8 6 30 30 H 1.09004 * 109.46938 * 95.11731 * 14 13 2 31 31 H 1.09004 * 109.47051 * 215.11319 * 14 13 2 32 32 H 1.08994 * 109.47436 * 335.12108 * 14 13 2 33 33 H 0.97001 * 119.99728 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.1731 -1.4285 -2.1912 7 8 3.5685 -1.8845 -3.1421 8 6 5.6456 -1.5340 -2.1322 9 6 6.4255 -2.1422 -3.1140 10 7 7.6939 -2.1013 -2.8277 11 16 7.8755 -1.3800 -1.4574 12 7 6.3793 -1.0707 -1.1443 13 7 2.0183 -0.6906 1.1962 14 6 1.6644 -2.0932 1.4280 15 6 2.8057 -0.0252 2.0976 16 1 2.8039 1.0546 2.1223 17 6 3.6059 -0.7383 2.9795 18 7 3.8411 -2.0160 2.7687 19 14 4.3489 0.1154 4.4657 20 1 3.3667 0.1145 5.5794 21 1 5.5768 -0.6053 4.8879 22 1 4.6939 1.5156 4.1110 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.6054 -1.7198 -1.2951 27 1 1.7516 -0.1584 -2.1370 28 1 3.9824 -0.4623 -0.4319 29 1 6.0239 -2.5925 -4.0097 30 1 2.4604 -2.7358 1.0518 31 1 1.5348 -2.2633 2.4969 32 1 0.7347 -2.3241 0.9080 33 1 4.4006 -2.5143 3.3848 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329394491.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:42 Heat of formation + Delta-G solvation = 47.931211 kcal Electronic energy + Delta-G solvation = -18861.798833 eV Core-core repulsion = 15857.815650 eV Total energy + Delta-G solvation = -3003.983183 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.86620 -38.70199 -36.68729 -33.94222 -33.27492 -31.94077 -29.34579 -27.55851 -26.04465 -25.60778 -23.19407 -22.38404 -19.91026 -19.35040 -19.15612 -17.25206 -16.92622 -15.88712 -15.50122 -15.27304 -15.07439 -14.40594 -13.83826 -13.70991 -12.84512 -12.68815 -12.26067 -12.12194 -12.08536 -11.63174 -11.27852 -11.12358 -11.02263 -10.85784 -10.80882 -10.72388 -10.42602 -10.31440 -9.86510 -9.80409 -9.74051 -9.09623 -8.58997 -8.45594 -6.84671 -5.75883 -3.20921 0.61317 1.54722 1.72422 1.76119 3.35657 3.42433 3.43081 3.46088 3.61846 4.45281 4.67499 5.19037 5.31209 5.36073 5.38052 5.54143 5.56916 5.92231 6.05500 6.10541 6.28043 6.36000 6.54971 6.66882 6.76965 6.86036 7.01538 7.37693 7.70842 7.78541 8.07760 8.33402 8.60409 9.18870 9.82525 10.30753 11.27629 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.015475 B = 0.007531 C = 0.005450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.930562 B = 3717.298760 C = 5135.931153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.157 3.843 3 H 0.069 0.931 4 C 0.105 3.895 5 N -0.675 5.675 6 C 0.596 3.404 7 O -0.548 6.548 8 C 0.019 3.981 9 C 0.085 3.915 10 N -0.586 5.586 11 S 0.700 5.300 12 N -0.523 5.523 13 N -0.594 5.594 14 C 0.163 3.837 15 C -0.262 4.262 16 H 0.068 0.932 17 C 0.008 3.992 18 N -0.899 5.899 19 Si 0.901 3.099 20 H -0.289 1.289 21 H -0.292 1.292 22 H -0.280 1.280 23 H 0.046 0.954 24 H 0.057 0.943 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.425 0.575 29 H 0.212 0.788 30 H 0.029 0.971 31 H 0.041 0.959 32 H 0.000 1.000 33 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.523 2.016 -8.341 9.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.048 3.952 3 H 0.087 0.913 4 C -0.021 4.021 5 N -0.325 5.325 6 C 0.376 3.624 7 O -0.426 6.426 8 C -0.157 4.157 9 C -0.110 4.110 10 N -0.426 5.426 11 S 0.742 5.258 12 N -0.372 5.372 13 N -0.317 5.317 14 C 0.019 3.981 15 C -0.391 4.391 16 H 0.086 0.914 17 C -0.192 4.192 18 N -0.543 5.543 19 Si 0.731 3.269 20 H -0.216 1.216 21 H -0.219 1.219 22 H -0.206 1.206 23 H 0.065 0.935 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.264 0.736 29 H 0.228 0.772 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.018 0.982 33 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.948 2.007 -7.771 9.428 hybrid contribution -0.789 0.001 0.365 0.869 sum 4.159 2.008 -7.406 8.728 Atomic orbital electron populations 1.22167 0.97286 1.01514 1.00733 1.20654 0.92740 0.95950 0.85829 0.91253 1.22092 0.79151 1.01442 0.99458 1.45742 1.08371 1.55875 1.22493 1.16752 0.83050 0.79237 0.83373 1.90762 1.67902 1.49787 1.34183 1.22657 0.98169 1.03185 0.91693 1.23741 0.85877 0.99409 1.01960 1.72236 1.23703 1.25026 1.21650 1.79048 1.06732 1.34334 1.05677 1.72615 1.10694 1.24189 1.29707 1.43965 1.57750 1.09675 1.20280 1.20754 0.94087 0.84439 0.98859 1.19187 1.17973 0.90763 1.11211 0.91381 1.24922 0.97945 0.96102 1.00183 1.70100 1.39891 1.07676 1.36648 0.86335 0.78303 0.78762 0.83457 1.21604 1.21864 1.20597 0.93496 0.92349 0.92900 0.91911 0.92338 0.73649 0.77207 0.95308 0.94013 0.98199 0.93821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.53 9.18 37.16 0.34 -2.19 16 2 C 0.16 2.96 2.87 -67.93 -0.19 2.77 16 3 H 0.07 1.30 7.85 -51.93 -0.41 0.89 16 4 C 0.10 1.91 4.97 -4.04 -0.02 1.89 16 5 N -0.67 -13.21 5.38 -61.28 -0.33 -13.54 16 6 C 0.60 11.31 7.82 -12.37 -0.10 11.21 16 7 O -0.55 -10.98 16.80 5.31 0.09 -10.89 16 8 C 0.02 0.32 6.81 -83.71 -0.57 -0.25 16 9 C 0.08 1.22 11.22 -17.87 -0.20 1.02 16 10 N -0.59 -8.21 11.41 19.43 0.22 -7.99 16 11 S 0.70 9.21 23.69 -107.50 -2.55 6.66 16 12 N -0.52 -8.96 11.00 23.17 0.25 -8.70 16 13 N -0.59 -13.68 2.29 -173.48 -0.40 -14.07 16 14 C 0.16 3.86 8.11 59.85 0.49 4.35 16 15 C -0.26 -6.68 9.34 -15.06 -0.14 -6.82 16 16 H 0.07 1.71 7.81 -52.48 -0.41 1.30 16 17 C 0.01 0.20 5.06 -17.43 -0.09 0.11 16 18 N -0.90 -24.92 10.67 55.49 0.59 -24.33 16 19 Si 0.90 21.14 29.58 -169.99 -5.03 16.11 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 25 H 0.05 0.86 6.66 -51.93 -0.35 0.51 16 26 H 0.06 1.21 7.84 -51.93 -0.41 0.80 16 27 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.42 9.11 7.48 -40.82 -0.31 8.81 16 29 H 0.21 2.53 8.06 -52.49 -0.42 2.11 16 30 H 0.03 0.75 7.40 -51.93 -0.38 0.37 16 31 H 0.04 1.07 7.21 -51.93 -0.37 0.70 16 32 H 0.00 -0.01 6.44 -51.93 -0.33 -0.34 16 33 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 LS Contribution 297.02 15.07 4.48 4.48 Total: -1.00 -29.33 297.02 -6.95 -36.27 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -3.79 Total: 3.92 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: -0.48 Total: 12.08 kcal Atomic # 7 Polarization: -68.97 SS G_CDS: 0.34 Total: -68.63 kcal Atomic # 8 Polarization: -10.98 SS G_CDS: 0.09 Total: -10.89 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Atomic # 16 Polarization: 9.21 SS G_CDS: -2.55 Total: 6.66 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.33 -6.95 -36.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329394491.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.206 kcal (2) G-P(sol) polarization free energy of solvation -29.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds