Wall clock time and date at job start Mon Mar 30 2020 01:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08990 * 109.47597 * 2 1 4 4 C 1.53001 * 109.47236 * 239.99727 * 2 1 3 5 5 N 1.46494 * 109.47303 * 185.00280 * 4 2 1 6 6 C 1.34783 * 119.99953 * 180.02562 * 5 4 2 7 7 O 1.21565 * 119.99847 * 359.97438 * 6 5 4 8 8 C 1.47752 * 119.99790 * 179.97438 * 6 5 4 9 9 C 1.39354 * 124.11364 * 179.72148 * 8 6 5 10 10 N 1.30091 * 112.14259 * 179.85405 * 9 8 6 11 11 S 1.55923 * 108.75441 * 0.39985 * 10 9 8 12 12 N 1.31486 * 124.11877 * 0.02855 * 8 6 5 13 13 N 1.46507 * 109.47093 * 120.00016 * 2 1 3 14 14 C 1.46498 * 119.99821 * 59.99701 * 13 2 1 15 15 C 1.36934 * 119.99913 * 239.99672 * 13 2 1 16 16 H 1.08005 * 120.00082 * 20.36577 * 15 13 2 17 17 C 1.38809 * 120.00201 * 200.36060 * 15 13 2 18 18 N 1.31624 * 119.99689 * 14.99990 * 17 15 13 19 19 Si 1.86800 * 120.00346 * 194.99742 * 17 15 13 20 20 H 1.48503 * 109.46776 * 85.00209 * 19 17 15 21 21 H 1.48504 * 109.47050 * 205.00320 * 19 17 15 22 22 H 1.48502 * 109.47068 * 325.00584 * 19 17 15 23 23 H 1.09000 * 109.47131 * 60.00124 * 1 2 3 24 24 H 1.09003 * 109.46789 * 299.99800 * 1 2 3 25 25 H 1.09005 * 109.47149 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47206 * 305.00472 * 4 2 1 27 27 H 1.09002 * 109.47163 * 64.99591 * 4 2 1 28 28 H 0.96999 * 120.00218 * 359.97438 * 5 4 2 29 29 H 1.08002 * 123.93035 * 0.02562 * 9 8 6 30 30 H 1.09004 * 109.46938 * 95.11731 * 14 13 2 31 31 H 1.09004 * 109.47051 * 215.11319 * 14 13 2 32 32 H 1.08994 * 109.47436 * 335.12108 * 14 13 2 33 33 H 0.97001 * 119.99728 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0275 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1905 6 6 4.1731 -1.4285 -2.1912 7 8 3.5685 -1.8845 -3.1421 8 6 5.6456 -1.5340 -2.1322 9 6 6.4255 -2.1422 -3.1140 10 7 7.6939 -2.1013 -2.8277 11 16 7.8755 -1.3800 -1.4574 12 7 6.3793 -1.0707 -1.1443 13 7 2.0183 -0.6906 1.1962 14 6 1.6644 -2.0932 1.4280 15 6 2.8057 -0.0252 2.0976 16 1 2.8039 1.0546 2.1223 17 6 3.6059 -0.7383 2.9795 18 7 3.8411 -2.0160 2.7687 19 14 4.3489 0.1154 4.4657 20 1 3.3667 0.1145 5.5794 21 1 5.5768 -0.6053 4.8879 22 1 4.6939 1.5156 4.1110 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.6054 -1.7198 -1.2951 27 1 1.7516 -0.1584 -2.1370 28 1 3.9824 -0.4623 -0.4319 29 1 6.0239 -2.5925 -4.0097 30 1 2.4604 -2.7358 1.0518 31 1 1.5348 -2.2633 2.4969 32 1 0.7347 -2.3241 0.9080 33 1 4.4006 -2.5143 3.3848 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329394491.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:41 Heat of formation + Delta-G solvation = 27.221063 kcal Electronic energy + Delta-G solvation = -18862.696893 eV Core-core repulsion = 15857.815650 eV Total energy + Delta-G solvation = -3004.881242 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.10072 -40.13987 -38.33982 -35.50246 -34.64169 -33.60454 -31.10345 -28.85660 -27.98867 -26.94099 -24.95773 -23.71899 -21.33667 -20.89123 -20.33451 -18.85642 -18.61002 -17.22754 -17.02185 -16.88320 -16.33133 -16.03811 -15.45965 -15.20897 -14.64134 -14.37693 -13.84015 -13.59467 -13.26316 -13.19948 -12.83073 -12.59228 -12.51324 -12.43957 -12.26882 -12.22744 -12.08332 -12.04271 -11.71458 -11.46662 -11.16617 -10.57955 -10.27678 -9.91672 -8.77020 -7.75653 -5.21090 -0.60441 0.39291 0.49979 0.65357 1.48687 1.51260 1.57311 2.05257 2.23906 2.54617 3.38185 3.46204 3.66714 3.81573 4.07396 4.12438 4.41104 4.47199 4.63458 4.72321 4.83136 4.86643 5.11681 5.29396 5.32795 5.34366 5.45567 5.60860 5.70906 5.77372 6.36595 6.54952 7.08961 7.20652 7.92916 8.36753 9.25993 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.015475 B = 0.007531 C = 0.005450 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.930562 B = 3717.298760 C = 5135.931153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.154 3.846 3 H 0.072 0.928 4 C 0.110 3.890 5 N -0.684 5.684 6 C 0.595 3.405 7 O -0.564 6.564 8 C -0.004 4.004 9 C 0.090 3.910 10 N -0.592 5.592 11 S 0.776 5.224 12 N -0.566 5.566 13 N -0.602 5.602 14 C 0.182 3.818 15 C -0.258 4.258 16 H 0.072 0.928 17 C -0.042 4.042 18 N -0.927 5.927 19 Si 0.956 3.044 20 H -0.292 1.292 21 H -0.301 1.301 22 H -0.270 1.270 23 H 0.079 0.921 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.082 0.918 28 H 0.415 0.585 29 H 0.231 0.769 30 H -0.002 1.002 31 H 0.013 0.987 32 H 0.027 0.973 33 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.688 2.977 -9.151 10.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.047 3.953 3 H 0.090 0.910 4 C -0.016 4.016 5 N -0.332 5.332 6 C 0.376 3.624 7 O -0.444 6.444 8 C -0.178 4.178 9 C -0.102 4.102 10 N -0.433 5.433 11 S 0.817 5.183 12 N -0.417 5.417 13 N -0.326 5.326 14 C 0.037 3.963 15 C -0.388 4.388 16 H 0.090 0.910 17 C -0.238 4.238 18 N -0.574 5.574 19 Si 0.786 3.214 20 H -0.220 1.220 21 H -0.228 1.228 22 H -0.195 1.195 23 H 0.098 0.902 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.100 0.900 28 H 0.252 0.748 29 H 0.247 0.753 30 H 0.016 0.984 31 H 0.031 0.969 32 H 0.046 0.954 33 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 5.076 2.992 -8.624 10.445 hybrid contribution -0.771 -0.255 0.592 1.005 sum 4.305 2.737 -8.033 9.516 Atomic orbital electron populations 1.22049 0.94628 1.01825 1.02159 1.20877 0.94544 0.95528 0.84357 0.90990 1.22064 0.78641 1.00969 0.99907 1.45835 1.08828 1.56224 1.22343 1.16996 0.84052 0.78547 0.82842 1.90735 1.68683 1.50368 1.34577 1.22468 0.97386 1.05084 0.92818 1.23880 0.85624 0.98780 1.01966 1.72207 1.23455 1.25378 1.22298 1.78722 1.03820 1.31647 1.04065 1.72388 1.13032 1.25434 1.30832 1.44099 1.57511 1.09382 1.21570 1.20410 0.94189 0.84638 0.97049 1.19463 1.17089 0.91059 1.11143 0.90985 1.25532 0.99113 0.96673 1.02505 1.70260 1.41041 1.08840 1.37209 0.85453 0.77030 0.78241 0.80680 1.21986 1.22764 1.19464 0.90174 0.92828 0.93110 0.93055 0.90042 0.74808 0.75287 0.98384 0.96867 0.95449 0.94767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.35 9.18 71.98 0.66 -3.69 16 2 C 0.15 5.58 2.87 44.99 0.13 5.70 16 3 H 0.07 2.57 7.85 -2.39 -0.02 2.55 16 4 C 0.11 3.86 4.97 86.38 0.43 4.29 16 5 N -0.68 -26.64 5.38 -466.06 -2.51 -29.15 16 6 C 0.59 22.42 7.82 86.76 0.68 23.10 16 7 O -0.56 -22.29 16.80 -3.92 -0.07 -22.35 16 8 C 0.00 -0.14 6.81 41.98 0.29 0.15 16 9 C 0.09 2.48 11.22 85.22 0.96 3.43 16 10 N -0.59 -15.45 11.41 -92.45 -1.05 -16.51 16 11 S 0.78 19.10 23.69 -56.49 -1.34 17.76 16 12 N -0.57 -19.02 11.00 -80.60 -0.89 -19.91 16 13 N -0.60 -27.52 2.29 -702.78 -1.61 -29.13 16 14 C 0.18 8.70 8.11 127.77 1.04 9.74 16 15 C -0.26 -13.05 9.34 84.03 0.79 -12.27 16 16 H 0.07 3.55 7.81 -2.91 -0.02 3.53 16 17 C -0.04 -2.25 5.06 84.86 0.43 -1.82 16 18 N -0.93 -52.50 10.67 21.65 0.23 -52.27 16 19 Si 0.96 43.63 29.58 68.60 2.03 45.66 16 20 H -0.29 -13.40 7.11 99.48 0.71 -12.70 16 21 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 22 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 23 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 24 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.05 1.52 6.66 -2.38 -0.02 1.50 16 26 H 0.05 1.93 7.84 -2.39 -0.02 1.91 16 27 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 28 H 0.41 17.92 7.48 -92.71 -0.69 17.23 16 29 H 0.23 5.16 8.06 -2.91 -0.02 5.14 16 30 H 0.00 -0.12 7.40 -2.39 -0.02 -0.13 16 31 H 0.01 0.67 7.21 -2.38 -0.02 0.65 16 32 H 0.03 1.13 6.44 -2.39 -0.02 1.11 16 33 H 0.24 13.68 8.31 -92.71 -0.77 12.91 16 Total: -1.00 -62.57 297.02 0.64 -61.93 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.45 Total: 15.32 kcal Atomic # 6 Polarization: 23.25 SS G_CDS: 5.39 Total: 28.64 kcal Atomic # 7 Polarization: -141.14 SS G_CDS: -5.83 Total: -146.97 kcal Atomic # 8 Polarization: -22.29 SS G_CDS: -0.07 Total: -22.35 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Atomic # 16 Polarization: 19.10 SS G_CDS: -1.34 Total: 17.76 kcal Total: -62.57 0.64 -61.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329394491.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.154 kcal (2) G-P(sol) polarization free energy of solvation -62.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds