Wall clock time and date at job start Mon Mar 30 2020 01:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47177 * 2 1 4 4 S 1.81399 * 109.47294 * 239.99666 * 2 1 3 5 5 C 1.81391 * 103.00178 * 64.99963 * 4 2 1 6 6 C 1.52997 * 109.47559 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.46667 * 300.00227 * 6 5 4 8 8 C 1.52998 * 109.47143 * 59.99839 * 6 5 4 9 9 C 1.50698 * 109.47442 * 180.02562 * 6 5 4 10 10 H 1.08001 * 119.99804 * 359.97438 * 9 6 5 11 11 C 1.37877 * 120.00083 * 180.02562 * 9 6 5 12 12 N 1.31520 * 120.00013 * 359.97438 * 11 9 6 13 13 Si 1.86795 * 120.00190 * 179.97438 * 11 9 6 14 14 H 1.48502 * 109.47066 * 90.00027 * 13 11 9 15 15 H 1.48495 * 109.47294 * 209.99883 * 13 11 9 16 16 H 1.48501 * 109.47015 * 330.00006 * 13 11 9 17 17 C 1.50707 * 109.46807 * 119.99572 * 2 1 3 18 18 C 1.33388 * 125.19940 * 240.00176 * 17 2 1 19 19 C 1.38433 * 114.91766 * 179.97438 * 18 17 2 20 20 C 1.33389 * 114.92022 * 0.02562 * 19 18 17 21 21 S 1.75879 * 125.20222 * 59.97702 * 17 2 1 22 22 H 1.08998 * 109.47679 * 300.00592 * 1 2 3 23 23 H 1.08997 * 109.46999 * 60.00397 * 1 2 3 24 24 H 1.09000 * 109.47177 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47341 * 300.00533 * 5 4 2 26 26 H 1.09005 * 109.46957 * 59.99739 * 5 4 2 27 27 H 1.08999 * 109.47563 * 60.00233 * 7 6 5 28 28 H 1.09008 * 109.47117 * 179.97438 * 7 6 5 29 29 H 1.09005 * 109.47410 * 299.99575 * 7 6 5 30 30 H 1.09000 * 109.47017 * 60.00140 * 8 6 5 31 31 H 1.08994 * 109.47160 * 180.02562 * 8 6 5 32 32 H 1.09006 * 109.47057 * 300.00550 * 8 6 5 33 33 H 0.96993 * 120.00047 * 180.02562 * 12 11 9 34 34 H 1.08000 * 122.54563 * 359.95533 * 18 17 2 35 35 H 1.07998 * 122.53579 * 180.02562 * 19 18 17 36 36 H 1.07995 * 125.20209 * 180.26467 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8552 -1.4811 5 6 1.5665 0.2150 -2.8309 6 6 2.0040 -0.3788 -4.1713 7 6 3.5301 -0.4815 -4.2097 8 6 1.3948 -1.7727 -4.3348 9 6 1.5325 0.5108 -5.2927 10 1 0.9760 1.4095 -5.0714 11 6 1.8106 0.1766 -6.6011 12 7 2.4879 -0.9181 -6.8706 13 14 1.2256 1.2788 -7.9912 14 1 2.2674 2.2941 -8.2898 15 1 0.9738 0.4570 -9.2021 16 1 -0.0296 1.9616 -7.5866 17 6 2.0323 -0.7104 1.2306 18 6 2.8023 -0.1644 2.1730 19 6 3.1394 -1.0122 3.2142 20 6 2.6434 -2.2466 3.1169 21 16 1.6922 -2.3857 1.6440 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.4793 0.2880 -2.8037 26 1 2.0002 1.2083 -2.7141 27 1 3.8716 -1.1247 -3.3987 28 1 3.8419 -0.9050 -5.1646 29 1 3.9642 0.5116 -4.0933 30 1 0.3076 -1.6995 -4.3073 31 1 1.7068 -2.1959 -5.2895 32 1 1.7362 -2.4158 -3.5236 33 1 2.6838 -1.1530 -7.7910 34 1 3.1378 0.8611 2.1272 35 1 3.7570 -0.6979 4.0425 36 1 2.7979 -3.0381 3.8353 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333283471.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:46 Heat of formation + Delta-G solvation = 14.536295 kcal Electronic energy + Delta-G solvation = -16232.974817 eV Core-core repulsion = 13741.543985 eV Total energy + Delta-G solvation = -2491.430832 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -37.95260 -35.90958 -33.81666 -31.50469 -28.64098 -26.10571 -25.57874 -25.09701 -24.41716 -22.27978 -19.40123 -18.93359 -17.21126 -15.96217 -15.63339 -15.43865 -14.70436 -14.02018 -13.88890 -13.47261 -13.17562 -12.89929 -12.64231 -12.39113 -12.21826 -12.00193 -11.59489 -11.39038 -11.26164 -11.03299 -10.80470 -10.64130 -10.61070 -10.23888 -10.04985 -9.52727 -9.47773 -9.37773 -8.61487 -8.49220 -8.39218 -8.35561 -7.00113 -5.97440 -4.09042 0.93550 1.65240 2.06204 2.20894 2.86723 3.27344 3.28411 3.35826 3.38892 4.41246 4.62060 5.00540 5.06734 5.28210 5.29186 5.48116 5.54504 5.70930 5.83551 6.00995 6.07949 6.15455 6.19336 6.29237 6.45748 6.58462 6.87217 7.02064 7.19779 7.20795 7.43825 7.67803 7.73414 8.10063 8.21333 8.43620 8.90218 9.56063 11.03245 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.044320 B = 0.004201 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.616375 B = 6663.440283 C = 6790.200730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.007 4.007 3 H 0.096 0.904 4 S -0.248 6.248 5 C -0.055 4.055 6 C 0.082 3.918 7 C -0.131 4.131 8 C -0.131 4.131 9 C -0.507 4.507 10 H 0.054 0.946 11 C 0.067 3.933 12 N -0.882 5.882 13 Si 0.892 3.108 14 H -0.281 1.281 15 H -0.286 1.286 16 H -0.275 1.275 17 C -0.142 4.142 18 C -0.140 4.140 19 C -0.133 4.133 20 C -0.228 4.228 21 S 0.129 5.871 22 H 0.060 0.940 23 H 0.067 0.933 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.021 0.979 28 H 0.082 0.918 29 H 0.023 0.977 30 H 0.023 0.977 31 H 0.082 0.918 32 H 0.021 0.979 33 H 0.260 0.740 34 H 0.138 0.862 35 H 0.137 0.863 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.260 -0.529 17.041 17.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.137 4.137 3 H 0.114 0.886 4 S -0.017 6.017 5 C -0.203 4.203 6 C 0.081 3.919 7 C -0.189 4.189 8 C -0.189 4.189 9 C -0.547 4.547 10 H 0.072 0.928 11 C -0.134 4.134 12 N -0.521 5.521 13 Si 0.720 3.280 14 H -0.207 1.207 15 H -0.212 1.212 16 H -0.200 1.200 17 C -0.261 4.261 18 C -0.173 4.173 19 C -0.164 4.164 20 C -0.364 4.364 21 S 0.393 5.607 22 H 0.078 0.922 23 H 0.086 0.914 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.040 0.960 28 H 0.101 0.899 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.101 0.899 32 H 0.040 0.960 33 H 0.070 0.930 34 H 0.155 0.845 35 H 0.154 0.846 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -1.443 -2.760 16.139 16.437 hybrid contribution -0.098 2.959 -0.009 2.961 sum -1.541 0.199 16.130 16.205 Atomic orbital electron populations 1.22120 0.92612 1.03206 1.02319 1.21586 0.98414 1.00762 0.92910 0.88621 1.87116 1.75814 1.39402 0.99417 1.23889 1.01873 0.98805 0.95748 1.17960 0.93177 0.93468 0.87337 1.21849 0.97158 0.98441 1.01480 1.21839 0.97972 0.97446 1.01621 1.21029 1.35380 1.07909 0.90338 0.92785 1.24881 0.94937 0.95126 0.98492 1.69831 1.39448 1.23695 1.19099 0.86601 0.79075 0.80533 0.81799 1.20734 1.21208 1.20021 1.23951 1.04960 0.97465 0.99701 1.20079 1.00863 1.01620 0.94701 1.20078 1.02834 0.93167 1.00303 1.25684 1.06576 1.01551 1.02630 1.84429 1.50197 1.09485 1.16623 0.92154 0.91442 0.91413 0.91527 0.91702 0.96036 0.89898 0.95774 0.95760 0.89897 0.96035 0.92995 0.84471 0.84568 0.82147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.89 9.02 37.16 0.34 -1.56 16 2 C -0.01 -0.10 3.23 -27.88 -0.09 -0.19 16 3 H 0.10 1.34 8.08 -51.92 -0.42 0.92 16 4 S -0.25 -4.59 18.11 -107.50 -1.95 -6.54 16 5 C -0.06 -1.14 4.57 37.16 0.17 -0.97 16 6 C 0.08 1.99 0.52 -155.66 -0.08 1.91 16 7 C -0.13 -3.21 8.01 37.16 0.30 -2.91 16 8 C -0.13 -3.18 8.01 37.16 0.30 -2.88 16 9 C -0.51 -13.42 8.01 -34.44 -0.28 -13.70 16 10 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 11 C 0.07 1.80 5.15 -17.82 -0.09 1.71 16 12 N -0.88 -24.22 9.35 55.43 0.52 -23.70 16 13 Si 0.89 20.81 29.54 -169.99 -5.02 15.79 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 C -0.14 -1.95 5.09 -36.00 -0.18 -2.14 16 18 C -0.14 -1.72 10.01 -41.20 -0.41 -2.13 16 19 C -0.13 -1.45 10.18 -41.20 -0.42 -1.87 16 20 C -0.23 -2.48 11.23 29.04 0.33 -2.15 16 21 S 0.13 1.66 23.03 -107.50 -2.48 -0.82 16 22 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.07 0.92 6.92 -51.93 -0.36 0.56 16 24 H 0.07 0.91 8.00 -51.93 -0.42 0.50 16 25 H 0.07 1.34 7.14 -51.92 -0.37 0.97 16 26 H 0.06 1.32 8.14 -51.92 -0.42 0.89 16 27 H 0.02 0.49 6.91 -51.93 -0.36 0.13 16 28 H 0.08 2.21 6.07 -51.92 -0.32 1.90 16 29 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.08 2.20 6.07 -51.93 -0.32 1.89 16 32 H 0.02 0.48 6.92 -51.93 -0.36 0.13 16 33 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.16 1.33 8.06 -52.49 -0.42 0.90 16 LS Contribution 313.30 15.07 4.72 4.72 Total: -1.00 -27.43 313.30 -9.75 -37.18 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -5.41 Total: 0.24 kcal Atomic # 6 Polarization: -26.75 SS G_CDS: -0.13 Total: -26.87 kcal Atomic # 7 Polarization: -24.22 SS G_CDS: 0.52 Total: -23.70 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Atomic # 16 Polarization: -2.94 SS G_CDS: -4.42 Total: -7.36 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -27.43 -9.75 -37.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333283471.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.715 kcal (2) G-P(sol) polarization free energy of solvation -27.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds