Wall clock time and date at job start Mon Mar 30 2020 01:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47177 * 2 1 4 4 S 1.81399 * 109.47294 * 239.99666 * 2 1 3 5 5 C 1.81391 * 103.00178 * 64.99963 * 4 2 1 6 6 C 1.52997 * 109.47559 * 180.02562 * 5 4 2 7 7 C 1.53001 * 109.46667 * 300.00227 * 6 5 4 8 8 C 1.52998 * 109.47143 * 59.99839 * 6 5 4 9 9 C 1.50698 * 109.47442 * 180.02562 * 6 5 4 10 10 H 1.08001 * 119.99804 * 359.97438 * 9 6 5 11 11 C 1.37877 * 120.00083 * 180.02562 * 9 6 5 12 12 N 1.31520 * 120.00013 * 359.97438 * 11 9 6 13 13 Si 1.86795 * 120.00190 * 179.97438 * 11 9 6 14 14 H 1.48502 * 109.47066 * 90.00027 * 13 11 9 15 15 H 1.48495 * 109.47294 * 209.99883 * 13 11 9 16 16 H 1.48501 * 109.47015 * 330.00006 * 13 11 9 17 17 C 1.50707 * 109.46807 * 119.99572 * 2 1 3 18 18 C 1.33388 * 125.19940 * 240.00176 * 17 2 1 19 19 C 1.38433 * 114.91766 * 179.97438 * 18 17 2 20 20 C 1.33389 * 114.92022 * 0.02562 * 19 18 17 21 21 S 1.75879 * 125.20222 * 59.97702 * 17 2 1 22 22 H 1.08998 * 109.47679 * 300.00592 * 1 2 3 23 23 H 1.08997 * 109.46999 * 60.00397 * 1 2 3 24 24 H 1.09000 * 109.47177 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47341 * 300.00533 * 5 4 2 26 26 H 1.09005 * 109.46957 * 59.99739 * 5 4 2 27 27 H 1.08999 * 109.47563 * 60.00233 * 7 6 5 28 28 H 1.09008 * 109.47117 * 179.97438 * 7 6 5 29 29 H 1.09005 * 109.47410 * 299.99575 * 7 6 5 30 30 H 1.09000 * 109.47017 * 60.00140 * 8 6 5 31 31 H 1.08994 * 109.47160 * 180.02562 * 8 6 5 32 32 H 1.09006 * 109.47057 * 300.00550 * 8 6 5 33 33 H 0.96993 * 120.00047 * 180.02562 * 12 11 9 34 34 H 1.08000 * 122.54563 * 359.95533 * 18 17 2 35 35 H 1.07998 * 122.53579 * 180.02562 * 19 18 17 36 36 H 1.07995 * 125.20209 * 180.26467 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1347 -0.8552 -1.4811 5 6 1.5665 0.2150 -2.8309 6 6 2.0040 -0.3788 -4.1713 7 6 3.5301 -0.4815 -4.2097 8 6 1.3948 -1.7727 -4.3348 9 6 1.5325 0.5108 -5.2927 10 1 0.9760 1.4095 -5.0714 11 6 1.8106 0.1766 -6.6011 12 7 2.4879 -0.9181 -6.8706 13 14 1.2256 1.2788 -7.9912 14 1 2.2674 2.2941 -8.2898 15 1 0.9738 0.4570 -9.2021 16 1 -0.0296 1.9616 -7.5866 17 6 2.0323 -0.7104 1.2306 18 6 2.8023 -0.1644 2.1730 19 6 3.1394 -1.0122 3.2142 20 6 2.6434 -2.2466 3.1169 21 16 1.6922 -2.3857 1.6440 22 1 -0.3634 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 0.4793 0.2880 -2.8037 26 1 2.0002 1.2083 -2.7141 27 1 3.8716 -1.1247 -3.3987 28 1 3.8419 -0.9050 -5.1646 29 1 3.9642 0.5116 -4.0933 30 1 0.3076 -1.6995 -4.3073 31 1 1.7068 -2.1959 -5.2895 32 1 1.7362 -2.4158 -3.5236 33 1 2.6838 -1.1530 -7.7910 34 1 3.1378 0.8611 2.1272 35 1 3.7570 -0.6979 4.0425 36 1 2.7979 -3.0381 3.8353 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333283471.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:14:46 Heat of formation + Delta-G solvation = 2.946267 kcal Electronic energy + Delta-G solvation = -16233.477398 eV Core-core repulsion = 13741.543985 eV Total energy + Delta-G solvation = -2491.933413 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 270.081 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.86944 -37.82807 -34.85972 -33.51123 -29.61906 -27.83877 -27.56092 -27.13341 -25.38593 -23.30700 -20.92734 -20.20133 -18.36029 -17.88962 -16.80899 -16.63893 -16.46947 -15.59184 -15.10072 -14.88953 -14.64815 -14.19407 -14.12463 -13.58108 -13.38213 -13.20085 -13.15726 -13.01955 -12.74906 -12.67778 -12.52896 -12.29724 -12.19512 -11.92136 -11.60160 -11.41452 -11.27575 -11.03536 -10.39294 -10.35278 -9.52637 -9.36050 -8.47912 -7.99921 -6.18095 -0.04125 0.69944 0.95873 1.15420 1.43239 1.45291 1.53752 1.81227 1.95960 2.46669 3.22840 3.57464 3.94764 4.20929 4.27778 4.32235 4.39265 4.62118 4.69063 4.72289 4.75851 4.83213 4.95427 5.07384 5.12669 5.21575 5.25304 5.26000 5.39436 5.46769 5.59316 5.66547 5.66678 6.10136 6.21586 6.41906 6.87432 7.49723 8.98967 Molecular weight = 270.08amu Principal moments of inertia in cm(-1) A = 0.044320 B = 0.004201 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.616375 B = 6663.440283 C = 6790.200730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.009 3.991 3 H 0.103 0.897 4 S -0.276 6.276 5 C -0.046 4.046 6 C 0.073 3.927 7 C -0.118 4.118 8 C -0.118 4.118 9 C -0.524 4.524 10 H 0.051 0.949 11 C 0.024 3.976 12 N -0.904 5.904 13 Si 0.950 3.050 14 H -0.279 1.279 15 H -0.286 1.286 16 H -0.270 1.270 17 C -0.170 4.170 18 C -0.132 4.132 19 C -0.140 4.140 20 C -0.214 4.214 21 S 0.092 5.908 22 H 0.082 0.918 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.029 0.971 28 H 0.056 0.944 29 H 0.020 0.980 30 H 0.021 0.979 31 H 0.056 0.944 32 H 0.030 0.970 33 H 0.259 0.741 34 H 0.153 0.847 35 H 0.166 0.834 36 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.277 0.222 19.066 19.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 H 0.122 0.878 4 S -0.046 6.046 5 C -0.194 4.194 6 C 0.071 3.929 7 C -0.176 4.176 8 C -0.176 4.176 9 C -0.564 4.564 10 H 0.070 0.930 11 C -0.176 4.176 12 N -0.543 5.543 13 Si 0.776 3.224 14 H -0.204 1.204 15 H -0.211 1.211 16 H -0.195 1.195 17 C -0.289 4.289 18 C -0.165 4.165 19 C -0.170 4.170 20 C -0.350 4.350 21 S 0.356 5.644 22 H 0.101 0.899 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.086 0.914 26 H 0.083 0.917 27 H 0.048 0.952 28 H 0.075 0.925 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.075 0.925 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.170 0.830 35 H 0.184 0.816 36 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -1.465 -2.006 18.158 18.327 hybrid contribution -0.052 2.698 -0.469 2.739 sum -1.517 0.692 17.689 17.767 Atomic orbital electron populations 1.22077 0.91667 1.03078 1.03031 1.21566 0.99111 1.00516 0.90847 0.87843 1.87089 1.76339 1.40064 1.01095 1.23534 1.01862 0.98845 0.95183 1.17962 0.92820 0.93149 0.88923 1.21679 0.97561 0.98117 1.00280 1.21664 0.97665 0.97788 1.00437 1.21346 1.35409 1.08199 0.91423 0.93027 1.25567 0.95137 0.96279 1.00617 1.69969 1.40139 1.24846 1.19328 0.85690 0.78709 0.78914 0.79087 1.20444 1.21131 1.19495 1.23885 1.07049 0.97890 1.00062 1.20426 0.99202 1.02517 0.94342 1.20406 1.03010 0.92828 1.00743 1.26043 1.04979 1.02396 1.01585 1.84560 1.51476 1.09781 1.18603 0.89890 0.92112 0.92004 0.91385 0.91705 0.95168 0.92480 0.96047 0.95996 0.92496 0.95149 0.93154 0.82982 0.81645 0.79455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 9.02 71.98 0.65 -2.84 16 2 C 0.01 0.26 3.23 29.85 0.10 0.36 16 3 H 0.10 2.70 8.08 -2.39 -0.02 2.68 16 4 S -0.28 -10.09 18.11 -56.49 -1.02 -11.11 16 5 C -0.05 -1.89 4.57 71.98 0.33 -1.56 16 6 C 0.07 3.55 0.52 -52.93 -0.03 3.53 16 7 C -0.12 -5.86 8.01 71.98 0.58 -5.28 16 8 C -0.12 -5.80 8.01 71.98 0.58 -5.22 16 9 C -0.52 -27.94 8.01 25.60 0.21 -27.73 16 10 H 0.05 2.71 7.74 -2.91 -0.02 2.68 16 11 C 0.02 1.26 5.15 84.65 0.44 1.70 16 12 N -0.90 -50.45 9.35 21.45 0.20 -50.25 16 13 Si 0.95 42.80 29.54 68.60 2.03 44.82 16 14 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 15 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 17 C -0.17 -4.36 5.09 24.59 0.13 -4.24 16 18 C -0.13 -2.85 10.01 21.22 0.21 -2.64 16 19 C -0.14 -2.55 10.18 21.22 0.22 -2.33 16 20 C -0.21 -4.00 11.23 66.72 0.75 -3.25 16 21 S 0.09 2.24 23.03 -56.49 -1.30 0.94 16 22 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.06 1.59 6.92 -2.39 -0.02 1.57 16 24 H 0.06 1.62 8.00 -2.39 -0.02 1.60 16 25 H 0.07 2.72 7.14 -2.39 -0.02 2.71 16 26 H 0.06 2.61 8.14 -2.39 -0.02 2.59 16 27 H 0.03 1.39 6.91 -2.39 -0.02 1.38 16 28 H 0.06 3.11 6.07 -2.38 -0.01 3.09 16 29 H 0.02 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 3.09 6.07 -2.39 -0.01 3.08 16 32 H 0.03 1.40 6.92 -2.38 -0.02 1.38 16 33 H 0.26 13.89 8.31 -92.71 -0.77 13.12 16 34 H 0.15 2.76 8.06 -2.91 -0.02 2.74 16 35 H 0.17 2.04 8.06 -2.91 -0.02 2.01 16 36 H 0.19 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -58.37 313.30 5.09 -53.28 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: 1.05 Total: 11.83 kcal Atomic # 6 Polarization: -53.65 SS G_CDS: 4.14 Total: -49.51 kcal Atomic # 7 Polarization: -50.45 SS G_CDS: 0.20 Total: -50.25 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: -7.85 SS G_CDS: -2.32 Total: -10.17 kcal Total: -58.37 5.09 -53.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333283471.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.223 kcal (2) G-P(sol) polarization free energy of solvation -58.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.277 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds