Wall clock time and date at job start Mon Mar 30 2020 01:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86793 * 119.99820 * 2 1 4 4 H 1.48503 * 109.47305 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47166 * 119.99674 * 3 2 1 6 6 H 1.48499 * 109.46987 * 239.99642 * 3 2 1 7 7 C 1.37870 * 119.99939 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00066 * 193.83475 * 7 2 1 9 9 C 1.50700 * 120.00275 * 13.83955 * 7 2 1 10 10 O 1.42897 * 112.94783 * 53.31840 * 9 7 2 11 11 C 1.53951 * 113.73930 * 281.58305 * 9 7 2 12 12 N 1.47585 * 86.11814 * 222.04471 * 11 9 7 13 13 C 1.34771 * 134.49296 * 204.63537 * 12 11 9 14 14 O 1.21279 * 120.00331 * 180.02562 * 13 12 11 15 15 C 1.50707 * 120.00011 * 0.02562 * 13 12 11 16 16 N 1.46497 * 109.46929 * 179.97438 * 15 13 12 17 17 C 1.47096 * 125.55631 * 269.71789 * 16 15 13 18 18 C 1.54089 * 103.77523 * 179.97438 * 17 16 15 19 19 O 1.45699 * 104.00791 * 0.31953 * 18 17 16 20 20 C 1.33770 * 109.47573 * 359.79065 * 19 18 17 21 21 O 1.21513 * 123.06957 * 180.02562 * 20 19 18 22 22 C 1.47584 * 91.01048 * 24.64339 * 12 11 9 23 23 H 0.97007 * 119.99483 * 185.87567 * 1 2 3 24 24 H 0.96698 * 114.00098 * 303.04147 * 10 9 7 25 25 H 1.08994 * 113.76900 * 336.35179 * 11 9 7 26 26 H 1.09010 * 113.76488 * 107.74641 * 11 9 7 27 27 H 1.08992 * 109.46728 * 299.99633 * 15 13 12 28 28 H 1.08994 * 109.46926 * 59.99489 * 15 13 12 29 29 H 1.09009 * 110.56380 * 298.60359 * 17 16 15 30 30 H 1.08993 * 110.57064 * 61.46374 * 17 16 15 31 31 H 1.09004 * 110.70444 * 241.60053 * 18 17 16 32 32 H 1.09003 * 110.46537 * 118.92226 * 18 17 16 33 33 H 1.09003 * 113.76727 * 221.05145 * 22 12 11 34 34 H 1.09000 * 113.86995 * 89.67487 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7464 -0.0006 5 1 3.1028 1.6964 1.2126 6 1 3.1029 1.6963 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0610 -1.2075 0.2242 9 6 1.2839 -2.4803 -0.3111 10 8 0.5652 -2.4315 -1.5452 11 6 0.4600 -3.0303 0.8674 12 7 0.9831 -4.3560 0.4838 13 6 0.5567 -5.6237 0.6495 14 8 1.2133 -6.5461 0.2150 15 6 -0.7362 -5.8951 1.3748 16 7 -0.9760 -7.3396 1.4215 17 6 -1.7159 -8.1168 0.4155 18 6 -1.6628 -9.5594 0.9544 19 8 -0.9133 -9.4437 2.1985 20 6 -0.5628 -8.1672 2.3909 21 8 0.0726 -7.7924 3.3565 22 6 2.1608 -3.7358 -0.1538 23 1 -0.4850 -0.8357 0.0860 24 1 -0.0835 -1.7161 -1.5945 25 1 0.8051 -2.6872 1.8427 26 1 -0.6172 -2.9282 0.7358 27 1 -0.6722 -5.5041 2.3901 28 1 -1.5571 -5.4077 0.8488 29 1 -2.7473 -7.7705 0.3467 30 1 -1.2241 -8.0535 -0.5552 31 1 -1.1429 -10.2135 0.2544 32 1 -2.6691 -9.9313 1.1478 33 1 2.4415 -4.1971 -1.1007 34 1 3.0066 -3.5995 0.5201 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336008598.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:30 Heat of formation + Delta-G solvation = -106.499115 kcal Electronic energy + Delta-G solvation = -21028.577153 eV Core-core repulsion = 17542.851747 eV Total energy + Delta-G solvation = -3485.725406 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.62002 -39.73955 -37.79282 -37.13306 -35.32197 -34.36456 -32.45227 -30.70725 -29.21942 -27.27521 -25.60860 -24.77319 -23.81299 -21.63211 -20.36098 -18.70891 -18.14337 -17.56490 -17.24828 -16.92879 -16.43559 -15.48678 -15.35883 -14.93993 -14.55954 -14.21392 -14.05028 -13.89335 -13.87024 -13.28346 -12.99126 -12.59125 -12.49612 -12.28143 -11.85330 -11.65008 -11.20546 -10.97163 -10.82035 -10.66232 -10.62597 -10.25345 -9.98333 -9.41381 -9.02024 -8.85969 -8.48105 -7.99226 -6.74459 -4.53893 2.20137 2.71194 2.92902 3.25721 3.28464 3.32649 3.47647 3.50050 3.97268 4.28245 4.43610 4.52802 4.66347 4.81877 4.98352 5.04918 5.22399 5.25513 5.31672 5.57253 5.61499 5.95717 6.03285 6.10799 6.27360 6.29627 6.41314 6.70923 7.24250 7.58558 7.95734 8.04121 8.21461 8.38635 8.49853 8.75497 9.16161 10.57142 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.044317 B = 0.004100 C = 0.004059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.655794 B = 6827.767635 C = 6896.110337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.038 3.962 3 Si 1.066 2.934 4 H -0.280 1.280 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.618 4.618 8 H 0.066 0.934 9 C 0.217 3.783 10 O -0.566 6.566 11 C 0.067 3.933 12 N -0.632 5.632 13 C 0.510 3.490 14 O -0.552 6.552 15 C 0.136 3.864 16 N -0.613 5.613 17 C 0.067 3.933 18 C 0.044 3.956 19 O -0.328 6.328 20 C 0.650 3.350 21 O -0.520 6.520 22 C 0.125 3.875 23 H 0.267 0.733 24 H 0.375 0.625 25 H 0.090 0.910 26 H 0.067 0.933 27 H 0.116 0.884 28 H 0.113 0.887 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.072 0.928 34 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.301 -10.707 -0.048 12.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.167 4.167 3 Si 0.893 3.107 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.656 4.656 8 H 0.084 0.916 9 C 0.176 3.824 10 O -0.374 6.374 11 C -0.056 4.056 12 N -0.366 5.366 13 C 0.297 3.703 14 O -0.431 6.431 15 C 0.011 3.989 16 N -0.360 5.360 17 C -0.057 4.057 18 C -0.031 4.031 19 O -0.239 6.239 20 C 0.404 3.596 21 O -0.405 6.405 22 C 0.003 3.997 23 H 0.079 0.921 24 H 0.224 0.776 25 H 0.108 0.892 26 H 0.085 0.915 27 H 0.134 0.866 28 H 0.131 0.869 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.124 0.876 32 H 0.124 0.876 33 H 0.090 0.910 34 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -6.482 -10.299 0.194 12.171 hybrid contribution -0.244 -1.162 0.080 1.190 sum -6.726 -11.461 0.274 13.292 Atomic orbital electron populations 1.70966 1.06984 1.30585 1.44829 1.25978 0.96189 1.03029 0.91553 0.83582 0.75183 0.74917 0.77023 1.20540 1.21058 1.20995 1.22232 0.97910 0.91975 1.53444 0.91599 1.20129 0.88316 0.92973 0.80974 1.86250 1.57082 1.56268 1.37751 1.24555 0.99741 0.78740 1.02550 1.50196 1.25982 1.04319 1.56140 1.20612 0.87662 0.81684 0.80312 1.90653 1.58276 1.42961 1.51247 1.21024 0.96748 0.77579 1.03528 1.47443 1.57061 1.08009 1.23475 1.22836 0.98368 0.90235 0.94235 1.24261 0.97849 0.97083 0.83882 1.87266 1.69020 1.26046 1.41519 1.18357 0.78551 0.79652 0.83086 1.91044 1.42024 1.75923 1.31461 1.23311 0.89509 0.90186 0.96682 0.92110 0.77577 0.89176 0.91478 0.86615 0.86870 0.88830 0.88695 0.87612 0.87616 0.91000 0.89221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.74 12.80 55.43 0.71 -22.03 16 2 C 0.04 0.95 5.26 -17.82 -0.09 0.85 16 3 Si 1.07 22.25 29.93 -169.99 -5.09 17.16 16 4 H -0.28 -5.91 7.11 56.52 0.40 -5.50 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 6 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.62 -15.26 8.56 -34.44 -0.29 -15.55 16 8 H 0.07 1.63 7.85 -52.49 -0.41 1.22 16 9 C 0.22 4.92 1.08 -90.84 -0.10 4.82 16 10 O -0.57 -13.25 13.45 -35.23 -0.47 -13.73 16 11 C 0.07 1.33 7.05 -2.97 -0.02 1.31 16 12 N -0.63 -12.67 3.61 -178.27 -0.64 -13.31 16 13 C 0.51 9.88 8.13 -10.98 -0.09 9.80 16 14 O -0.55 -12.46 17.16 5.56 0.10 -12.37 16 15 C 0.14 1.99 6.24 -5.19 -0.03 1.96 16 16 N -0.61 -8.69 2.45 -180.23 -0.44 -9.13 16 17 C 0.07 0.61 7.70 -3.15 -0.02 0.59 16 18 C 0.04 0.35 8.23 37.73 0.31 0.66 16 19 O -0.33 -4.57 11.09 -37.83 -0.42 -4.99 16 20 C 0.65 10.94 8.85 53.71 0.48 11.42 16 21 O -0.52 -10.87 17.54 -19.12 -0.34 -11.20 16 22 C 0.12 2.66 8.22 -2.97 -0.02 2.64 16 23 H 0.27 6.50 5.52 -40.82 -0.23 6.27 16 24 H 0.38 8.53 6.95 45.56 0.32 8.85 16 25 H 0.09 1.78 8.09 -51.93 -0.42 1.36 16 26 H 0.07 1.22 7.80 -51.92 -0.41 0.81 16 27 H 0.12 1.67 7.93 -51.93 -0.41 1.26 16 28 H 0.11 1.30 8.14 -51.93 -0.42 0.87 16 29 H 0.09 0.56 8.14 -51.92 -0.42 0.14 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 34 H 0.09 1.82 8.09 -51.93 -0.42 1.40 16 LS Contribution 299.76 15.07 4.52 4.52 Total: -1.00 -33.46 299.76 -5.28 -38.74 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -3.31 Total: 7.86 kcal Atomic # 6 Polarization: 18.38 SS G_CDS: 0.11 Total: 18.48 kcal Atomic # 7 Polarization: -44.10 SS G_CDS: -0.37 Total: -44.47 kcal Atomic # 8 Polarization: -41.16 SS G_CDS: -1.13 Total: -42.29 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.09 Total: 17.16 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.46 -5.28 -38.74 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336008598.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.759 kcal (2) G-P(sol) polarization free energy of solvation -33.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds