Wall clock time and date at job start Mon Mar 30 2020 01:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36758 * 127.14130 * 2 1 4 4 N 1.30303 * 107.31836 * 180.02562 * 3 2 1 5 5 N 1.28519 * 110.07581 * 359.76310 * 4 3 2 6 6 C 1.31288 * 109.86183 * 0.39605 * 5 4 3 7 7 S 1.76193 * 126.48738 * 179.88307 * 6 5 4 8 8 C 1.81002 * 100.00049 * 359.68248 * 7 6 5 9 9 C 1.50701 * 109.47156 * 180.02562 * 8 7 6 10 10 O 1.21280 * 119.99781 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 8 7 12 12 C 1.46497 * 119.99566 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.46983 * 180.02562 * 12 11 9 14 14 C 1.50697 * 109.47466 * 180.02562 * 13 12 11 15 15 H 1.08006 * 119.99920 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00428 * 180.02562 * 14 13 12 17 17 N 1.31520 * 119.99996 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 120.00227 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46845 * 90.00227 * 18 16 14 20 20 H 1.48499 * 109.46907 * 209.99714 * 18 16 14 21 21 H 1.48495 * 109.46933 * 330.00015 * 18 16 14 22 22 H 1.09006 * 109.46808 * 269.99482 * 1 2 3 23 23 H 1.08995 * 109.47690 * 29.99195 * 1 2 3 24 24 H 1.09001 * 109.47236 * 150.00216 * 1 2 3 25 25 H 1.07999 * 126.34145 * 0.02562 * 3 2 1 26 26 H 1.09002 * 109.47115 * 60.00094 * 8 7 6 27 27 H 1.09001 * 109.46925 * 300.00251 * 8 7 6 28 28 H 0.96995 * 120.00011 * 0.02562 * 11 9 8 29 29 H 1.09001 * 109.47487 * 300.00114 * 12 11 9 30 30 H 1.09002 * 109.47182 * 60.00342 * 12 11 9 31 31 H 1.09001 * 109.47289 * 299.99909 * 13 12 11 32 32 H 1.09002 * 109.47153 * 59.99993 * 13 12 11 33 33 H 0.96993 * 120.00405 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2907 1.0902 0.0000 4 7 3.5165 0.6483 -0.0006 5 7 3.5222 -0.6369 0.0041 6 6 2.2894 -1.0884 -0.0006 7 16 1.7928 -2.7789 0.0000 8 6 3.4144 -3.5829 -0.0013 9 6 3.2334 -5.0790 -0.0017 10 8 2.1178 -5.5548 -0.0015 11 7 4.3112 -5.8882 -0.0031 12 6 4.1351 -7.3426 -0.0040 13 6 5.5059 -8.0222 -0.0050 14 6 5.3249 -9.5183 -0.0065 15 1 4.3314 -9.9420 -0.0064 16 6 6.4274 -10.3461 -0.0071 17 7 7.6372 -9.8302 -0.0068 18 14 6.2030 -12.2007 -0.0083 19 1 6.1436 -12.6911 -1.4087 20 1 7.3473 -12.8381 0.6913 21 1 4.9399 -12.5468 0.6916 22 1 -0.3633 -0.0001 1.0277 23 1 -0.3634 0.8900 -0.5137 24 1 -0.3634 -0.8900 -0.5138 25 1 1.9837 2.1256 0.0004 26 1 3.9690 -3.2839 0.8881 27 1 3.9674 -3.2840 -0.8918 28 1 5.2034 -5.5077 -0.0036 29 1 3.5821 -7.6422 0.8862 30 1 3.5807 -7.6409 -0.8938 31 1 6.0593 -7.7227 -0.8950 32 1 6.0600 -7.7238 0.8850 33 1 8.4128 -10.4125 -0.0068 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337782249.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:23:44 Heat of formation + Delta-G solvation = 12.823235 kcal Electronic energy + Delta-G solvation = -17139.136506 eV Core-core repulsion = 14133.630927 eV Total energy + Delta-G solvation = -3005.505579 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.86638 -40.73417 -36.66767 -35.96859 -34.86087 -32.47085 -31.73603 -30.34278 -28.49655 -26.58966 -23.84364 -23.40407 -22.92570 -21.74858 -19.21594 -18.60382 -17.88667 -17.44082 -17.42340 -16.87235 -16.70605 -16.41649 -16.02252 -15.34457 -15.05402 -14.55001 -14.36659 -14.21951 -13.85947 -13.71967 -13.22650 -12.92936 -12.77021 -12.52913 -12.24535 -12.08371 -11.69460 -11.48528 -11.38340 -11.35283 -11.08462 -11.06783 -10.60590 -10.10814 -8.78820 -8.23788 -6.34301 -0.15303 0.60904 0.80601 1.42661 1.42829 1.43614 1.54413 1.71491 1.73855 2.17636 2.43899 3.11317 3.55367 3.69710 3.83477 3.94047 4.14843 4.27341 4.35146 4.47104 4.49750 4.65154 4.67247 4.85714 4.93524 5.21444 5.46680 5.58489 5.78307 5.78435 6.15579 6.44527 6.79324 7.07827 7.35216 7.53110 8.88091 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.055590 B = 0.002831 C = 0.002702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 503.570277 B = 9887.932467 C =10360.450978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.466 5.466 3 C 0.177 3.823 4 N -0.340 5.340 5 N -0.332 5.332 6 C 0.130 3.870 7 S 0.080 5.920 8 C -0.136 4.136 9 C 0.529 3.471 10 O -0.571 6.571 11 N -0.708 5.708 12 C 0.141 3.859 13 C 0.020 3.980 14 C -0.546 4.546 15 H 0.061 0.939 16 C 0.006 3.994 17 N -0.928 5.928 18 Si 0.965 3.035 19 H -0.272 1.272 20 H -0.281 1.281 21 H -0.265 1.265 22 H 0.100 0.900 23 H 0.131 0.869 24 H 0.091 0.909 25 H 0.271 0.729 26 H 0.138 0.862 27 H 0.138 0.862 28 H 0.414 0.586 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.009 0.991 32 H 0.009 0.991 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.113 22.529 -0.049 27.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.159 5.159 3 C -0.113 4.113 4 N -0.178 5.178 5 N -0.177 5.177 6 C -0.246 4.246 7 S 0.306 5.694 8 C -0.287 4.287 9 C 0.314 3.686 10 O -0.451 6.451 11 N -0.359 5.359 12 C 0.018 3.982 13 C -0.017 4.017 14 C -0.584 4.584 15 H 0.079 0.921 16 C -0.193 4.193 17 N -0.567 5.567 18 Si 0.789 3.211 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.189 1.189 22 H 0.119 0.881 23 H 0.149 0.851 24 H 0.110 0.890 25 H 0.287 0.713 26 H 0.156 0.844 27 H 0.156 0.844 28 H 0.250 0.750 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.306 21.669 -0.041 26.529 hybrid contribution 0.691 -0.244 -0.002 0.732 sum -14.615 21.425 -0.043 25.935 Atomic orbital electron populations 1.22575 0.71987 1.07211 1.06071 1.46824 1.10556 1.04248 1.54274 1.27644 0.85401 0.96360 1.01899 1.73829 1.21038 1.03026 1.19929 1.74593 1.17106 1.04179 1.21780 1.27355 0.90688 0.97999 1.08558 1.86058 1.06593 0.83951 1.92778 1.23630 1.00658 0.93637 1.10823 1.19951 0.84635 0.87983 0.76021 1.90707 1.25198 1.77470 1.51762 1.46021 1.09438 1.07218 1.73175 1.21306 0.99024 0.77539 1.00369 1.19155 0.91344 0.94718 0.96490 1.21476 0.93174 0.92349 1.51444 0.92100 1.25881 0.94822 1.04095 0.94461 1.70059 0.98459 1.37134 1.51061 0.85447 0.78009 0.79106 0.78512 1.19779 1.20656 1.18940 0.88126 0.85081 0.89016 0.71329 0.84395 0.84403 0.74955 0.92969 0.92940 0.97244 0.97234 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.33 11.09 127.77 1.42 1.75 16 2 N -0.47 -7.11 3.21 -551.23 -1.77 -8.88 16 3 C 0.18 2.66 12.80 179.76 2.30 4.96 16 4 N -0.34 -8.68 12.18 -59.32 -0.72 -9.40 16 5 N -0.33 -9.32 11.60 -56.85 -0.66 -9.98 16 6 C 0.13 2.99 8.07 179.55 1.45 4.43 16 7 S 0.08 1.84 20.94 -56.49 -1.18 0.66 16 8 C -0.14 -3.30 5.72 71.24 0.41 -2.89 16 9 C 0.53 16.76 7.85 87.66 0.69 17.45 16 10 O -0.57 -21.94 15.86 -3.03 -0.05 -21.99 16 11 N -0.71 -23.50 5.56 -463.06 -2.57 -26.07 16 12 C 0.14 5.86 5.61 86.38 0.48 6.34 16 13 C 0.02 1.01 5.09 29.85 0.15 1.17 16 14 C -0.55 -30.16 9.11 25.60 0.23 -29.93 16 15 H 0.06 3.27 7.74 -2.91 -0.02 3.25 16 16 C 0.01 0.34 5.46 84.65 0.46 0.80 16 17 N -0.93 -54.40 13.29 21.45 0.28 -54.12 16 18 Si 0.96 43.41 29.54 68.60 2.03 45.43 16 19 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 21 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 22 H 0.10 0.30 8.14 -2.38 -0.02 0.28 16 23 H 0.13 -0.21 8.14 -2.39 -0.02 -0.23 16 24 H 0.09 0.59 7.86 -2.39 -0.02 0.57 16 25 H 0.27 0.80 8.06 -2.91 -0.02 0.77 16 26 H 0.14 3.03 8.14 -2.39 -0.02 3.01 16 27 H 0.14 3.02 8.14 -2.39 -0.02 3.01 16 28 H 0.41 11.81 8.47 -92.71 -0.79 11.02 16 29 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -76.23 309.87 3.29 -72.94 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: 0.34 Total: 7.32 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: 7.59 Total: 4.08 kcal Atomic # 7 Polarization: -103.01 SS G_CDS: -5.44 Total: -108.45 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.05 Total: -21.99 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -1.18 Total: 0.66 kcal Total: -76.23 3.29 -72.94 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337782249.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.760 kcal (2) G-P(sol) polarization free energy of solvation -76.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds