Wall clock time and date at job start Mon Mar 30 2020 01:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99996 * 2 1 4 4 H 1.48497 * 109.46925 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46988 * 299.99708 * 3 2 1 6 6 H 1.48500 * 109.47214 * 59.99707 * 3 2 1 7 7 C 1.37874 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99890 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00174 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47410 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47472 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.47204 * 179.97438 * 11 10 9 13 13 O 1.21294 * 119.99631 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00173 * 179.97438 * 12 11 10 15 15 C 1.40050 * 120.00377 * 174.73819 * 14 12 11 16 16 C 1.38773 * 120.44649 * 147.43061 * 15 14 12 17 17 N 1.31890 * 120.74385 * 179.97438 * 16 15 14 18 18 C 1.31997 * 121.78543 * 0.02562 * 17 16 15 19 19 F 1.35093 * 119.59047 * 179.97438 * 18 17 16 20 20 C 1.38763 * 120.81888 * 359.97438 * 18 17 16 21 21 F 1.35101 * 120.41323 * 180.02562 * 20 18 17 22 22 C 1.38631 * 119.17253 * 359.75236 * 20 18 17 23 23 H 0.96997 * 120.00151 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47029 * 60.01044 * 9 7 2 25 25 H 1.09001 * 109.47482 * 300.00332 * 9 7 2 26 26 H 1.09004 * 109.47271 * 59.99975 * 10 9 7 27 27 H 1.09002 * 109.47004 * 300.00895 * 10 9 7 28 28 H 1.09000 * 109.46773 * 300.00145 * 11 10 9 29 29 H 1.08995 * 109.46990 * 59.99797 * 11 10 9 30 30 H 0.97006 * 119.99858 * 354.74046 * 14 12 11 31 31 H 1.07991 * 119.63116 * 0.02562 * 16 15 14 32 32 H 1.07999 * 120.81837 * 180.24974 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4595 -6.1326 -0.0018 13 8 3.6520 -5.9109 -0.0013 14 7 2.0103 -7.4033 -0.0019 15 6 2.9155 -8.4661 -0.1137 16 6 2.6615 -9.6754 0.5178 17 7 3.5097 -10.6803 0.4160 18 6 4.6250 -10.5807 -0.2828 19 9 5.4626 -11.6381 -0.3568 20 6 4.9479 -9.4034 -0.9424 21 9 6.0915 -9.3106 -1.6558 22 6 4.0797 -8.3254 -0.8649 23 1 -0.4850 0.8400 -0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6246 -2.5571 0.8896 26 1 2.8719 -3.6044 0.8895 27 1 2.8720 -3.6043 -0.8905 28 1 0.8532 -5.0451 0.8886 29 1 0.8539 -5.0446 -0.8913 30 1 1.0599 -7.5817 0.0754 31 1 1.7590 -9.7954 1.0984 32 1 4.3027 -7.3978 -1.3712 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338341637.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:32 Heat of formation + Delta-G solvation = -98.441192 kcal Electronic energy + Delta-G solvation = -19261.002638 eV Core-core repulsion = 15664.539134 eV Total energy + Delta-G solvation = -3596.463504 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.80663 -48.90210 -41.14585 -39.40973 -35.45015 -34.37854 -32.56551 -32.06912 -30.22289 -27.91508 -24.90254 -24.42042 -23.21786 -21.07849 -20.11717 -18.72490 -18.49312 -18.29788 -17.06221 -16.73360 -16.38242 -16.10770 -15.69835 -15.38088 -15.17855 -14.51053 -14.42469 -14.07258 -13.92146 -13.50006 -13.23964 -13.05824 -12.40416 -11.96043 -11.59004 -11.24316 -10.90143 -10.78448 -10.61904 -10.57629 -10.11508 -9.82384 -9.76230 -9.42281 -9.12159 -8.68243 -8.39843 -6.05267 -4.07066 0.23456 0.49634 2.37186 2.54473 2.96107 3.03932 3.29033 3.36846 3.42057 3.63060 3.98109 4.23690 4.41509 4.45053 4.78938 4.89258 5.23073 5.31265 5.41407 5.46536 5.50372 5.79308 6.02252 6.20547 6.54635 6.74829 6.95503 7.00610 7.04032 7.60525 7.71550 7.89124 7.94760 8.37499 9.00112 9.57687 11.06184 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.043744 B = 0.002990 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.937568 B = 9363.684473 C = 9877.853208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.057 0.943 9 C 0.020 3.980 10 C -0.097 4.097 11 C -0.136 4.136 12 C 0.514 3.486 13 O -0.511 6.511 14 N -0.674 5.674 15 C 0.131 3.869 16 C 0.099 3.901 17 N -0.464 5.464 18 C 0.255 3.745 19 F -0.103 7.103 20 C 0.058 3.942 21 F -0.115 7.115 22 C -0.094 4.094 23 H 0.260 0.740 24 H 0.017 0.983 25 H 0.017 0.983 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.096 0.904 29 H 0.097 0.903 30 H 0.420 0.580 31 H 0.179 0.821 32 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.259 -20.502 -0.847 20.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.558 4.558 8 H 0.075 0.925 9 C -0.017 4.017 10 C -0.136 4.136 11 C -0.176 4.176 12 C 0.304 3.696 13 O -0.384 6.384 14 N -0.322 5.322 15 C 0.033 3.967 16 C -0.062 4.062 17 N -0.177 5.177 18 C 0.099 3.901 19 F -0.082 7.082 20 C 0.034 3.966 21 F -0.093 7.093 22 C -0.123 4.123 23 H 0.070 0.930 24 H 0.035 0.965 25 H 0.035 0.965 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.257 0.743 31 H 0.196 0.804 32 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 2.855 -20.942 -0.475 21.141 hybrid contribution 0.466 1.372 -0.477 1.525 sum 3.321 -19.570 -0.952 19.873 Atomic orbital electron populations 1.69962 1.06047 1.26563 1.51071 1.25017 0.94864 0.99321 0.95271 0.86534 0.80230 0.83684 0.77583 1.19663 1.21002 1.20995 1.21282 0.93230 0.90940 1.50348 0.92499 1.19131 0.93900 0.91372 0.97256 1.21506 0.98804 0.91295 1.01946 1.21921 0.97888 0.93217 1.04551 1.21757 0.90940 0.83154 0.73792 1.90726 1.17286 1.84137 1.46224 1.43860 1.10137 1.04519 1.73640 1.18640 0.92344 0.89894 0.95854 1.22438 0.99010 0.87016 0.97719 1.67061 1.01928 1.32200 1.16519 1.18039 0.89397 0.83597 0.99034 1.91655 1.67638 1.54626 1.94324 1.18194 0.86269 0.94253 0.97875 1.91584 1.46030 1.96389 1.75315 1.21678 0.93290 0.99357 0.97966 0.93040 0.96493 0.96494 0.92461 0.92499 0.88554 0.88480 0.74276 0.80377 0.81128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.22 13.29 55.43 0.74 -25.49 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.52 -14.42 9.11 -34.44 -0.31 -14.73 16 8 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 9 C 0.02 0.49 4.97 -27.88 -0.14 0.36 16 10 C -0.10 -1.88 4.44 -26.73 -0.12 -2.00 16 11 C -0.14 -1.82 5.70 -27.88 -0.16 -1.98 16 12 C 0.51 6.54 7.59 -10.99 -0.08 6.46 16 13 O -0.51 -8.49 13.69 5.54 0.08 -8.42 16 14 N -0.67 -5.80 5.36 -9.76 -0.05 -5.85 16 15 C 0.13 1.26 6.31 -83.52 -0.53 0.73 16 16 C 0.10 0.82 11.11 -17.33 -0.19 0.63 16 17 N -0.46 -5.02 10.36 -13.40 -0.14 -5.16 16 18 C 0.26 2.96 8.41 -17.29 -0.15 2.82 16 19 F -0.10 -1.24 17.21 2.25 0.04 -1.21 16 20 C 0.06 0.67 7.35 -39.24 -0.29 0.38 16 21 F -0.11 -1.41 17.19 2.25 0.04 -1.37 16 22 C -0.09 -1.07 8.75 -39.05 -0.34 -1.41 16 23 H 0.26 7.16 8.31 -40.82 -0.34 6.83 16 24 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 1.16 8.10 -51.93 -0.42 0.74 16 27 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 28 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 29 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.42 1.97 8.82 -40.82 -0.36 1.61 16 31 H 0.18 0.82 8.06 -52.49 -0.42 0.39 16 32 H 0.17 2.12 6.49 -52.49 -0.34 1.78 16 LS Contribution 295.35 15.07 4.45 4.45 Total: -1.00 -32.51 295.35 -5.47 -37.99 By element: Atomic # 1 Polarization: -0.88 SS G_CDS: -3.20 Total: -4.07 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -2.41 Total: -7.27 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.55 Total: -36.49 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: 0.08 Total: -8.42 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.08 Total: -2.57 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.51 -5.47 -37.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338341637.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.456 kcal (2) G-P(sol) polarization free energy of solvation -32.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds