Wall clock time and date at job start Mon Mar 30 2020 01:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99996 * 2 1 4 4 H 1.48497 * 109.46925 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46988 * 299.99708 * 3 2 1 6 6 H 1.48500 * 109.47214 * 59.99707 * 3 2 1 7 7 C 1.37874 * 119.99794 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99890 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00174 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47410 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.47472 * 180.02562 * 10 9 7 12 12 C 1.50702 * 109.47204 * 179.97438 * 11 10 9 13 13 O 1.21294 * 119.99631 * 0.02562 * 12 11 10 14 14 N 1.34774 * 120.00173 * 179.97438 * 12 11 10 15 15 C 1.40050 * 120.00377 * 174.73819 * 14 12 11 16 16 C 1.38773 * 120.44649 * 147.43061 * 15 14 12 17 17 N 1.31890 * 120.74385 * 179.97438 * 16 15 14 18 18 C 1.31997 * 121.78543 * 0.02562 * 17 16 15 19 19 F 1.35093 * 119.59047 * 179.97438 * 18 17 16 20 20 C 1.38763 * 120.81888 * 359.97438 * 18 17 16 21 21 F 1.35101 * 120.41323 * 180.02562 * 20 18 17 22 22 C 1.38631 * 119.17253 * 359.75236 * 20 18 17 23 23 H 0.96997 * 120.00151 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.47029 * 60.01044 * 9 7 2 25 25 H 1.09001 * 109.47482 * 300.00332 * 9 7 2 26 26 H 1.09004 * 109.47271 * 59.99975 * 10 9 7 27 27 H 1.09002 * 109.47004 * 300.00895 * 10 9 7 28 28 H 1.09000 * 109.46773 * 300.00145 * 11 10 9 29 29 H 1.08995 * 109.46990 * 59.99797 * 11 10 9 30 30 H 0.97006 * 119.99858 * 354.74046 * 14 12 11 31 31 H 1.07991 * 119.63116 * 0.02562 * 16 15 14 32 32 H 1.07999 * 120.81837 * 180.24974 * 22 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 6 2.2452 -3.6621 -0.0005 11 6 1.4802 -4.9871 -0.0012 12 6 2.4595 -6.1326 -0.0018 13 8 3.6520 -5.9109 -0.0013 14 7 2.0103 -7.4033 -0.0019 15 6 2.9155 -8.4661 -0.1137 16 6 2.6615 -9.6754 0.5178 17 7 3.5097 -10.6803 0.4160 18 6 4.6250 -10.5807 -0.2828 19 9 5.4626 -11.6381 -0.3568 20 6 4.9479 -9.4034 -0.9424 21 9 6.0915 -9.3106 -1.6558 22 6 4.0797 -8.3254 -0.8649 23 1 -0.4850 0.8400 -0.0004 24 1 0.6242 -2.5567 -0.8904 25 1 0.6246 -2.5571 0.8896 26 1 2.8719 -3.6044 0.8895 27 1 2.8720 -3.6043 -0.8905 28 1 0.8532 -5.0451 0.8886 29 1 0.8539 -5.0446 -0.8913 30 1 1.0599 -7.5817 0.0754 31 1 1.7590 -9.7954 1.0984 32 1 4.3027 -7.3978 -1.3712 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338341637.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:31 Heat of formation + Delta-G solvation = -120.252005 kcal Electronic energy + Delta-G solvation = -19261.948426 eV Core-core repulsion = 15664.539134 eV Total energy + Delta-G solvation = -3597.409292 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.71163 -49.81179 -42.02782 -40.37424 -36.47794 -36.01608 -34.10451 -33.23598 -31.22578 -29.46847 -26.20173 -25.51683 -24.39505 -22.40151 -21.44367 -19.63567 -19.36550 -19.19742 -18.46470 -17.92565 -17.57694 -17.16307 -16.79327 -16.47058 -16.30198 -16.06069 -15.35021 -15.21813 -15.16091 -14.40508 -14.30782 -14.15375 -13.96467 -13.76161 -13.12938 -12.64353 -12.52578 -12.39405 -12.15446 -11.58606 -11.52481 -11.42000 -11.22577 -10.94143 -10.62671 -10.52979 -9.49723 -8.19811 -6.28673 -0.59118 -0.33979 1.39385 1.39892 1.40990 1.53380 1.69484 2.11683 2.23737 2.42129 2.80996 3.13993 3.17137 3.44738 3.56718 3.85284 4.14205 4.22437 4.30006 4.43003 4.67125 4.80051 4.96058 4.99908 5.13042 5.23048 5.38560 5.56901 5.79048 5.89978 6.18906 6.26514 6.30892 6.87860 6.98762 7.40198 8.91597 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.043744 B = 0.002990 C = 0.002834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 639.937568 B = 9363.684473 C = 9877.853208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.004 3.996 3 Si 0.957 3.043 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.277 1.277 7 C -0.546 4.546 8 H 0.050 0.950 9 C 0.025 3.975 10 C -0.087 4.087 11 C -0.126 4.126 12 C 0.521 3.479 13 O -0.555 6.555 14 N -0.648 5.648 15 C 0.130 3.870 16 C 0.125 3.875 17 N -0.476 5.476 18 C 0.247 3.753 19 F -0.110 7.110 20 C 0.046 3.954 21 F -0.125 7.125 22 C -0.103 4.103 23 H 0.264 0.736 24 H 0.004 0.996 25 H 0.004 0.996 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.122 0.878 29 H 0.120 0.880 30 H 0.442 0.558 31 H 0.225 0.775 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.174 -21.248 -0.253 21.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.782 3.218 4 H -0.193 1.193 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.584 4.584 8 H 0.068 0.932 9 C -0.012 4.012 10 C -0.125 4.125 11 C -0.166 4.166 12 C 0.311 3.689 13 O -0.432 6.432 14 N -0.297 5.297 15 C 0.031 3.969 16 C -0.036 4.036 17 N -0.189 5.189 18 C 0.093 3.907 19 F -0.089 7.089 20 C 0.023 3.977 21 F -0.103 7.103 22 C -0.132 4.132 23 H 0.073 0.927 24 H 0.022 0.978 25 H 0.022 0.978 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.140 0.860 29 H 0.138 0.862 30 H 0.285 0.715 31 H 0.242 0.758 32 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 1.742 -21.732 0.114 21.802 hybrid contribution 0.751 1.586 -0.648 1.871 sum 2.493 -20.146 -0.534 20.306 Atomic orbital electron populations 1.70053 1.07360 1.27653 1.51777 1.25844 0.95776 1.02873 0.94869 0.85521 0.78959 0.79411 0.77917 1.19315 1.20253 1.20219 1.21742 0.93331 0.92955 1.50361 0.93173 1.19026 0.94241 0.92170 0.95804 1.21206 0.97737 0.93019 1.00540 1.21719 0.97541 0.90314 1.06985 1.21471 0.89882 0.84202 0.73296 1.90734 1.18985 1.84926 1.48542 1.43455 1.11232 1.02886 1.72144 1.18698 0.91876 0.90512 0.95784 1.23119 0.99251 0.85301 0.95949 1.67185 1.01951 1.33030 1.16695 1.18118 0.89800 0.83377 0.99443 1.91631 1.68005 1.54870 1.94415 1.18229 0.86319 0.94613 0.98586 1.91551 1.46627 1.96470 1.75673 1.21657 0.94240 0.98710 0.98579 0.92714 0.97808 0.97757 0.93928 0.93937 0.86030 0.86176 0.71534 0.75838 0.82593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.41 13.29 21.45 0.28 -54.12 16 2 C 0.00 0.25 5.46 84.65 0.46 0.71 16 3 Si 0.96 43.93 29.54 68.60 2.03 45.96 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 6 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 7 C -0.55 -30.65 9.11 25.60 0.23 -30.42 16 8 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 9 C 0.02 1.20 4.97 29.85 0.15 1.35 16 10 C -0.09 -3.34 4.44 30.59 0.14 -3.21 16 11 C -0.13 -3.10 5.70 29.85 0.17 -2.93 16 12 C 0.52 12.24 7.59 87.66 0.67 12.90 16 13 O -0.56 -18.23 13.69 -3.07 -0.04 -18.27 16 14 N -0.65 -9.01 5.36 -303.17 -1.62 -10.63 16 15 C 0.13 2.15 6.31 38.20 0.24 2.40 16 16 C 0.12 1.61 11.11 84.81 0.94 2.55 16 17 N -0.48 -9.18 10.36 -196.29 -2.03 -11.21 16 18 C 0.25 5.54 8.41 84.79 0.71 6.25 16 19 F -0.11 -2.62 17.21 44.97 0.77 -1.85 16 20 C 0.05 1.07 7.35 22.49 0.17 1.23 16 21 F -0.12 -3.15 17.19 44.97 0.77 -2.37 16 22 C -0.10 -2.28 8.75 22.61 0.20 -2.09 16 23 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 24 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 25 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 26 H 0.04 1.74 8.10 -2.38 -0.02 1.72 16 27 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 28 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 29 H 0.12 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.44 2.10 8.82 -92.70 -0.82 1.28 16 31 H 0.23 0.76 8.06 -2.92 -0.02 0.74 16 32 H 0.16 3.96 6.49 -2.91 -0.02 3.94 16 Total: -1.00 -71.85 295.35 4.58 -67.26 By element: Atomic # 1 Polarization: -3.86 SS G_CDS: 0.35 Total: -3.51 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: 4.08 Total: -11.24 kcal Atomic # 7 Polarization: -72.59 SS G_CDS: -3.37 Total: -75.97 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.04 Total: -18.27 kcal Atomic # 9 Polarization: -5.77 SS G_CDS: 1.55 Total: -4.22 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -71.85 4.58 -67.26 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338341637.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.991 kcal (2) G-P(sol) polarization free energy of solvation -71.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.261 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds