Wall clock time and date at job start Mon Mar 30 2020 00:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00094 * 2 1 4 4 H 1.48498 * 109.47083 * 269.99864 * 3 2 1 5 5 H 1.48504 * 109.47054 * 30.00040 * 3 2 1 6 6 H 1.48503 * 109.47083 * 150.00134 * 3 2 1 7 7 C 1.37877 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00262 * 185.63944 * 7 2 1 9 9 C 1.50706 * 120.00055 * 5.64693 * 7 2 1 10 10 C 1.52993 * 113.56718 * 69.38418 * 9 7 2 11 11 O 1.45198 * 109.47568 * 51.07181 * 10 9 7 12 12 C 1.34227 * 117.00618 * 179.97438 * 11 10 9 13 13 O 1.20827 * 119.99430 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.00249 * 179.97438 * 12 11 10 15 15 H 1.08998 * 110.05335 * 304.30157 * 14 12 11 16 16 C 1.54258 * 110.07167 * 65.80156 * 14 12 11 17 17 C 1.54535 * 103.09855 * 120.30295 * 16 14 12 18 18 C 1.51779 * 103.52831 * 16.48624 * 17 16 14 19 19 O 1.20832 * 126.43130 * 149.38520 * 18 17 16 20 20 O 1.34604 * 107.17928 * 329.40773 * 18 17 16 21 21 C 1.53373 * 114.56054 * 295.11071 * 9 7 2 22 22 O 1.43350 * 88.44295 * 220.42323 * 21 9 7 23 23 C 1.43345 * 88.32396 * 28.15082 * 22 21 9 24 24 H 0.96998 * 119.99815 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47174 * 171.07662 * 10 9 7 26 26 H 1.09004 * 109.47200 * 291.06863 * 10 9 7 27 27 H 1.08998 * 110.69142 * 238.70028 * 16 14 12 28 28 H 1.08999 * 110.69448 * 1.72580 * 16 14 12 29 29 H 1.09005 * 110.61352 * 134.99989 * 17 16 14 30 30 H 1.09007 * 110.60971 * 257.81940 * 17 16 14 31 31 H 1.08994 * 113.39017 * 105.52642 * 21 9 7 32 32 H 1.08997 * 113.39291 * 335.31777 * 21 9 7 33 33 H 1.09005 * 113.39228 * 86.75122 * 23 22 21 34 34 H 1.09004 * 113.39200 * 216.95154 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0806 -1.1963 0.0924 9 6 1.2565 -2.4961 -0.1273 10 6 0.6382 -2.7131 -1.5098 11 8 1.6497 -2.5055 -2.5305 12 6 1.2671 -2.6593 -3.8079 13 8 0.1246 -2.9571 -4.0646 14 6 2.2623 -2.4595 -4.9218 15 1 2.7130 -1.4699 -4.8473 16 6 3.3556 -3.5457 -4.8562 17 6 3.2287 -4.2534 -6.2242 18 6 2.4192 -3.2754 -7.0561 19 8 2.4915 -3.1194 -8.2521 20 8 1.6057 -2.6138 -6.2121 21 6 0.3210 -2.8118 1.0464 22 8 0.7468 -4.1783 0.9673 23 6 1.9960 -3.7145 0.4389 24 1 -0.4850 0.8400 0.0004 25 1 0.2542 -3.7308 -1.5804 26 1 -0.1780 -2.0059 -1.6579 27 1 4.3414 -3.0938 -4.7465 28 1 3.1592 -4.2411 -4.0402 29 1 4.2121 -4.4117 -6.6670 30 1 2.6998 -5.2006 -6.1185 31 1 -0.7336 -2.6726 0.8087 32 1 0.6114 -2.3211 1.9753 33 1 2.7238 -3.4596 1.2093 34 1 2.4089 -4.3664 -0.3310 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344138375.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:19 Heat of formation + Delta-G solvation = -169.441528 kcal Electronic energy + Delta-G solvation = -21176.094081 eV Core-core repulsion = 17655.346535 eV Total energy + Delta-G solvation = -3520.747545 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.103 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.32597 -40.04536 -39.33181 -37.59659 -35.82934 -33.33017 -33.03722 -30.21292 -29.10214 -25.66550 -25.16667 -24.50411 -23.25395 -21.69132 -20.66050 -18.82794 -17.79011 -17.30577 -17.19591 -16.72004 -16.22865 -15.66142 -15.31119 -15.03168 -14.74476 -14.64954 -14.24873 -13.97151 -13.51706 -13.00309 -12.68162 -12.57609 -12.14799 -11.85437 -11.64811 -11.48267 -11.33396 -11.10145 -10.99677 -10.75143 -10.60344 -10.45204 -9.97920 -9.93567 -9.13474 -9.05942 -8.80824 -8.58166 -6.26052 -4.30879 1.65470 2.40195 2.51154 3.18771 3.27441 3.28316 3.47776 3.72288 4.00285 4.25624 4.39485 4.57961 4.93355 5.02538 5.04742 5.10894 5.27642 5.47828 5.52979 5.69934 5.90084 6.11849 6.24147 6.36722 6.43200 6.52096 6.73851 6.94815 6.99604 7.18691 7.19196 7.21238 7.69931 8.00849 8.19291 8.67170 9.35434 10.83116 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.019693 B = 0.005817 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.497553 B = 4812.042329 C = 5577.124887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.070 3.930 3 Si 0.895 3.105 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.507 4.507 8 H 0.067 0.933 9 C 0.021 3.979 10 C 0.108 3.892 11 O -0.323 6.323 12 C 0.452 3.548 13 O -0.497 6.497 14 C 0.095 3.905 15 H 0.138 0.862 16 C -0.140 4.140 17 C -0.187 4.187 18 C 0.489 3.511 19 O -0.445 6.445 20 O -0.327 6.327 21 C 0.061 3.939 22 O -0.403 6.403 23 C 0.031 3.969 24 H 0.266 0.734 25 H 0.048 0.952 26 H 0.085 0.915 27 H 0.109 0.891 28 H 0.105 0.895 29 H 0.115 0.885 30 H 0.118 0.882 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.624 -5.758 -6.041 11.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.134 4.134 3 Si 0.723 3.277 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.545 4.545 8 H 0.085 0.915 9 C 0.020 3.980 10 C 0.035 3.965 11 O -0.238 6.238 12 C 0.293 3.707 13 O -0.385 6.385 14 C 0.038 3.962 15 H 0.155 0.845 16 C -0.178 4.178 17 C -0.225 4.225 18 C 0.329 3.671 19 O -0.327 6.327 20 O -0.244 6.244 21 C -0.016 4.016 22 O -0.323 6.323 23 C -0.046 4.046 24 H 0.075 0.925 25 H 0.066 0.934 26 H 0.103 0.897 27 H 0.127 0.873 28 H 0.124 0.876 29 H 0.133 0.867 30 H 0.137 0.863 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 6.801 -5.817 -6.602 11.121 hybrid contribution 0.253 1.093 0.060 1.124 sum 7.054 -4.724 -6.541 10.718 Atomic orbital electron populations 1.69902 1.05989 1.27360 1.49161 1.24973 0.94876 0.99302 0.94230 0.86539 0.79895 0.83011 0.78291 1.20503 1.21203 1.19699 1.20713 0.93468 0.88949 1.51362 0.91512 1.20421 0.93691 0.94759 0.89128 1.22918 0.89112 0.99352 0.85087 1.86466 1.44062 1.79558 1.13697 1.22821 0.87872 0.75108 0.84901 1.90686 1.20251 1.42801 1.84721 1.22848 0.90504 1.03466 0.79357 0.84505 1.22847 0.99373 0.97425 0.98153 1.23107 1.03453 1.00450 0.95525 1.23337 0.77100 0.79811 0.86830 1.90720 1.62446 1.66535 1.13013 1.87196 1.41888 1.73216 1.22140 1.23619 0.99934 0.79090 0.98978 1.89644 1.29726 1.26186 1.86702 1.23821 0.88347 0.95544 0.96843 0.92458 0.93369 0.89719 0.87273 0.87619 0.86680 0.86347 0.90931 0.90629 0.91017 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.09 12.09 55.43 0.67 -22.42 16 2 C 0.07 1.73 5.36 -17.82 -0.10 1.64 16 3 Si 0.90 19.57 29.54 -169.99 -5.02 14.55 16 4 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 6 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 7 C -0.51 -12.27 8.01 -34.44 -0.28 -12.54 16 8 H 0.07 1.59 7.82 -52.49 -0.41 1.18 16 9 C 0.02 0.46 0.76 -155.28 -0.12 0.35 16 10 C 0.11 2.38 4.83 37.15 0.18 2.56 16 11 O -0.32 -6.35 9.79 -39.25 -0.38 -6.73 16 12 C 0.45 8.12 7.09 36.01 0.26 8.37 16 13 O -0.50 -10.59 16.29 -25.29 -0.41 -11.00 16 14 C 0.10 1.25 4.12 -27.22 -0.11 1.13 16 15 H 0.14 1.50 8.14 -51.93 -0.42 1.08 16 16 C -0.14 -1.25 6.75 -25.27 -0.17 -1.42 16 17 C -0.19 -1.57 6.98 -26.54 -0.19 -1.76 16 18 C 0.49 6.38 8.57 36.54 0.31 6.69 16 19 O -0.45 -7.02 18.00 -18.29 -0.33 -7.35 16 20 O -0.33 -4.97 10.32 -46.62 -0.48 -5.45 16 21 C 0.06 1.35 7.20 24.60 0.18 1.52 16 22 O -0.40 -8.70 12.57 -35.23 -0.44 -9.15 16 23 C 0.03 0.62 7.89 24.59 0.19 0.82 16 24 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 25 H 0.05 1.02 7.96 -51.93 -0.41 0.61 16 26 H 0.08 2.09 7.58 -51.93 -0.39 1.69 16 27 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.11 0.94 7.71 -51.93 -0.40 0.54 16 29 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.12 0.88 8.14 -51.92 -0.42 0.46 16 31 H 0.07 1.65 8.13 -51.93 -0.42 1.23 16 32 H 0.08 1.69 8.10 -51.93 -0.42 1.27 16 33 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16 34 H 0.06 1.12 8.13 -51.93 -0.42 0.70 16 LS Contribution 301.87 15.07 4.55 4.55 Total: -1.00 -30.32 301.87 -5.82 -36.14 By element: Atomic # 1 Polarization: 3.63 SS G_CDS: -4.13 Total: -0.49 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 0.16 Total: 7.37 kcal Atomic # 7 Polarization: -23.09 SS G_CDS: 0.67 Total: -22.42 kcal Atomic # 8 Polarization: -37.64 SS G_CDS: -2.05 Total: -39.69 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.02 Total: 14.55 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -30.32 -5.82 -36.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344138375.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.303 kcal (2) G-P(sol) polarization free energy of solvation -30.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds