Wall clock time and date at job start Mon Mar 30 2020 00:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86798 * 120.00094 * 2 1 4 4 H 1.48498 * 109.47083 * 269.99864 * 3 2 1 5 5 H 1.48504 * 109.47054 * 30.00040 * 3 2 1 6 6 H 1.48503 * 109.47083 * 150.00134 * 3 2 1 7 7 C 1.37877 * 119.99943 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00262 * 185.63944 * 7 2 1 9 9 C 1.50706 * 120.00055 * 5.64693 * 7 2 1 10 10 C 1.52993 * 113.56718 * 69.38418 * 9 7 2 11 11 O 1.45198 * 109.47568 * 51.07181 * 10 9 7 12 12 C 1.34227 * 117.00618 * 179.97438 * 11 10 9 13 13 O 1.20827 * 119.99430 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.00249 * 179.97438 * 12 11 10 15 15 H 1.08998 * 110.05335 * 304.30157 * 14 12 11 16 16 C 1.54258 * 110.07167 * 65.80156 * 14 12 11 17 17 C 1.54535 * 103.09855 * 120.30295 * 16 14 12 18 18 C 1.51779 * 103.52831 * 16.48624 * 17 16 14 19 19 O 1.20832 * 126.43130 * 149.38520 * 18 17 16 20 20 O 1.34604 * 107.17928 * 329.40773 * 18 17 16 21 21 C 1.53373 * 114.56054 * 295.11071 * 9 7 2 22 22 O 1.43350 * 88.44295 * 220.42323 * 21 9 7 23 23 C 1.43345 * 88.32396 * 28.15082 * 22 21 9 24 24 H 0.96998 * 119.99815 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.47174 * 171.07662 * 10 9 7 26 26 H 1.09004 * 109.47200 * 291.06863 * 10 9 7 27 27 H 1.08998 * 110.69142 * 238.70028 * 16 14 12 28 28 H 1.08999 * 110.69448 * 1.72580 * 16 14 12 29 29 H 1.09005 * 110.61352 * 134.99989 * 17 16 14 30 30 H 1.09007 * 110.60971 * 257.81940 * 17 16 14 31 31 H 1.08994 * 113.39017 * 105.52642 * 21 9 7 32 32 H 1.08997 * 113.39291 * 335.31777 * 21 9 7 33 33 H 1.09005 * 113.39228 * 86.75122 * 23 22 21 34 34 H 1.09004 * 113.39200 * 216.95154 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0806 -1.1963 0.0924 9 6 1.2565 -2.4961 -0.1273 10 6 0.6382 -2.7131 -1.5098 11 8 1.6497 -2.5055 -2.5305 12 6 1.2671 -2.6593 -3.8079 13 8 0.1246 -2.9571 -4.0646 14 6 2.2623 -2.4595 -4.9218 15 1 2.7130 -1.4699 -4.8473 16 6 3.3556 -3.5457 -4.8562 17 6 3.2287 -4.2534 -6.2242 18 6 2.4192 -3.2754 -7.0561 19 8 2.4915 -3.1194 -8.2521 20 8 1.6057 -2.6138 -6.2121 21 6 0.3210 -2.8118 1.0464 22 8 0.7468 -4.1783 0.9673 23 6 1.9960 -3.7145 0.4389 24 1 -0.4850 0.8400 0.0004 25 1 0.2542 -3.7308 -1.5804 26 1 -0.1780 -2.0059 -1.6579 27 1 4.3414 -3.0938 -4.7465 28 1 3.1592 -4.2411 -4.0402 29 1 4.2121 -4.4117 -6.6670 30 1 2.6998 -5.2006 -6.1185 31 1 -0.7336 -2.6726 0.8087 32 1 0.6114 -2.3211 1.9753 33 1 2.7238 -3.4596 1.2093 34 1 2.4089 -4.3664 -0.3310 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344138375.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:19 Heat of formation + Delta-G solvation = -188.399513 kcal Electronic energy + Delta-G solvation = -21176.916161 eV Core-core repulsion = 17655.346535 eV Total energy + Delta-G solvation = -3521.569625 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.103 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.43945 -41.65151 -40.83783 -38.72971 -37.40795 -34.96035 -34.12071 -31.90391 -30.24528 -27.36075 -26.85460 -26.28267 -24.23739 -22.75904 -21.87724 -20.57791 -19.07770 -18.87226 -18.35548 -17.95889 -17.64088 -17.19835 -16.85784 -16.62675 -16.14882 -15.94085 -15.69384 -15.59609 -14.46155 -14.36996 -14.23917 -13.81057 -13.42314 -13.21979 -13.10482 -12.96654 -12.76175 -12.55206 -12.43567 -12.31951 -12.21551 -11.68592 -11.46366 -11.27255 -10.89681 -10.82978 -10.57231 -10.40293 -8.14837 -6.24040 0.66399 1.02342 1.23231 1.46271 1.50033 1.57475 2.36109 2.45393 2.86215 3.16073 3.17417 3.32774 3.47189 3.64472 3.96428 4.03007 4.18232 4.25229 4.40401 4.65031 4.67857 4.71182 4.78019 4.85532 4.91147 4.97204 5.23188 5.36859 5.43627 5.48523 5.56733 5.78423 6.19241 6.20945 6.66861 6.78453 7.44665 8.93335 Molecular weight = 270.10amu Principal moments of inertia in cm(-1) A = 0.019693 B = 0.005817 C = 0.005019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.497553 B = 4812.042329 C = 5577.124887 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.025 3.975 3 Si 0.949 3.051 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.260 1.260 7 C -0.508 4.508 8 H 0.072 0.928 9 C 0.006 3.994 10 C 0.119 3.881 11 O -0.322 6.322 12 C 0.450 3.550 13 O -0.539 6.539 14 C 0.098 3.902 15 H 0.162 0.838 16 C -0.131 4.131 17 C -0.169 4.169 18 C 0.485 3.515 19 O -0.482 6.482 20 O -0.362 6.362 21 C 0.064 3.936 22 O -0.409 6.409 23 C 0.041 3.959 24 H 0.261 0.739 25 H 0.050 0.950 26 H 0.048 0.952 27 H 0.147 0.853 28 H 0.109 0.891 29 H 0.150 0.850 30 H 0.132 0.868 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.085 0.915 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.438 -6.435 -6.178 13.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.175 4.175 3 Si 0.776 3.224 4 H -0.205 1.205 5 H -0.220 1.220 6 H -0.184 1.184 7 C -0.545 4.545 8 H 0.091 0.909 9 C 0.005 3.995 10 C 0.046 3.954 11 O -0.237 6.237 12 C 0.293 3.707 13 O -0.429 6.429 14 C 0.041 3.959 15 H 0.179 0.821 16 C -0.168 4.168 17 C -0.207 4.207 18 C 0.328 3.672 19 O -0.366 6.366 20 O -0.280 6.280 21 C -0.013 4.013 22 O -0.329 6.329 23 C -0.035 4.035 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.067 0.933 27 H 0.165 0.835 28 H 0.127 0.873 29 H 0.168 0.832 30 H 0.149 0.851 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.648 -6.509 -6.729 13.444 hybrid contribution -0.668 1.282 0.085 1.448 sum 8.981 -5.227 -6.644 12.333 Atomic orbital electron populations 1.70028 1.07268 1.27577 1.50634 1.25638 0.95412 1.02146 0.94344 0.85680 0.79105 0.79565 0.78098 1.20461 1.21967 1.18437 1.20982 0.93774 0.89594 1.50180 0.90945 1.20521 0.94295 0.95518 0.89176 1.22556 0.88730 0.98289 0.85873 1.86460 1.43091 1.79805 1.14325 1.23888 0.88400 0.73353 0.85067 1.90668 1.22420 1.44753 1.85041 1.23137 0.89601 1.06443 0.76689 0.82131 1.23012 0.99259 0.96147 0.98366 1.23147 1.04342 0.99140 0.94056 1.24108 0.76770 0.79847 0.86466 1.90695 1.63717 1.67562 1.14670 1.87154 1.43657 1.74058 1.23147 1.23493 0.99223 0.79615 0.98986 1.89635 1.30753 1.25602 1.86862 1.23868 0.87757 0.94455 0.97445 0.92951 0.93143 0.93335 0.83530 0.87260 0.83228 0.85057 0.92365 0.90979 0.89691 0.89384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.51 12.09 21.45 0.26 -48.25 16 2 C 0.02 1.22 5.36 84.65 0.45 1.67 16 3 Si 0.95 39.53 29.54 68.60 2.03 41.56 16 4 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 5 H -0.29 -12.47 7.11 99.48 0.71 -11.77 16 6 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 7 C -0.51 -23.96 8.01 25.60 0.21 -23.76 16 8 H 0.07 3.28 7.82 -2.91 -0.02 3.26 16 9 C 0.01 0.25 0.76 -52.68 -0.04 0.21 16 10 C 0.12 5.27 4.83 71.98 0.35 5.62 16 11 O -0.32 -12.36 9.79 -51.39 -0.50 -12.86 16 12 C 0.45 15.87 7.09 71.24 0.51 16.37 16 13 O -0.54 -23.43 16.29 28.22 0.46 -22.97 16 14 C 0.10 2.35 4.12 30.27 0.12 2.48 16 15 H 0.16 3.10 8.14 -2.39 -0.02 3.08 16 16 C -0.13 -1.78 6.75 31.54 0.21 -1.56 16 17 C -0.17 -2.19 6.98 30.71 0.21 -1.98 16 18 C 0.49 11.89 8.57 71.58 0.61 12.51 16 19 O -0.48 -14.89 18.00 21.50 0.39 -14.50 16 20 O -0.36 -10.72 10.32 -49.01 -0.51 -11.23 16 21 C 0.06 2.84 7.20 63.85 0.46 3.30 16 22 O -0.41 -17.17 12.57 -148.98 -1.87 -19.04 16 23 C 0.04 1.54 7.89 63.84 0.50 2.04 16 24 H 0.26 13.50 8.31 -92.71 -0.77 12.73 16 25 H 0.05 2.16 7.96 -2.39 -0.02 2.14 16 26 H 0.05 2.48 7.58 -2.38 -0.02 2.46 16 27 H 0.15 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.11 1.50 7.71 -2.39 -0.02 1.48 16 29 H 0.15 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.13 1.46 8.14 -2.38 -0.02 1.44 16 31 H 0.06 2.72 8.13 -2.39 -0.02 2.70 16 32 H 0.07 3.23 8.10 -2.39 -0.02 3.21 16 33 H 0.09 2.97 8.10 -2.38 -0.02 2.95 16 34 H 0.09 2.85 8.13 -2.39 -0.02 2.83 16 Total: -1.00 -67.25 301.87 4.97 -62.28 By element: Atomic # 1 Polarization: 7.00 SS G_CDS: 1.12 Total: 8.11 kcal Atomic # 6 Polarization: 13.30 SS G_CDS: 3.60 Total: 16.90 kcal Atomic # 7 Polarization: -48.51 SS G_CDS: 0.26 Total: -48.25 kcal Atomic # 8 Polarization: -78.57 SS G_CDS: -2.03 Total: -80.60 kcal Atomic # 14 Polarization: 39.53 SS G_CDS: 2.03 Total: 41.56 kcal Total: -67.25 4.97 -62.28 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344138375.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.120 kcal (2) G-P(sol) polarization free energy of solvation -67.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds