Wall clock time and date at job start Mon Mar 30 2020 01:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99980 * 2 1 4 4 H 1.48501 * 109.46788 * 89.99733 * 3 2 1 5 5 H 1.48501 * 109.46992 * 209.99765 * 3 2 1 6 6 H 1.48495 * 109.46895 * 329.99807 * 3 2 1 7 7 C 1.37878 * 120.00501 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99630 * 358.35626 * 7 2 1 9 9 C 1.50700 * 120.00369 * 178.35710 * 7 2 1 10 10 O 1.42894 * 112.93643 * 55.32346 * 9 7 2 11 11 C 1.53938 * 113.73131 * 283.75207 * 9 7 2 12 12 N 1.48190 * 86.10253 * 221.95947 * 11 9 7 13 13 C 1.46895 * 111.06990 * 137.52568 * 12 11 9 14 14 C 1.50697 * 109.47114 * 70.56332 * 13 12 11 15 15 C 1.38534 * 120.77925 * 105.00498 * 14 13 12 16 16 C 1.38519 * 119.16586 * 180.02562 * 15 14 13 17 17 F 1.35097 * 119.62131 * 179.97438 * 16 15 14 18 18 N 1.32031 * 120.75052 * 359.97438 * 16 15 14 19 19 C 1.31910 * 121.72058 * 0.02562 * 18 16 15 20 20 C 1.38367 * 120.75636 * 359.71380 * 19 18 16 21 21 F 1.35099 * 120.41252 * 180.30686 * 20 19 18 22 22 C 1.47958 * 90.79824 * 24.60360 * 12 11 9 23 23 H 0.97005 * 119.99891 * 178.18868 * 1 2 3 24 24 H 0.96694 * 114.00278 * 294.04456 * 10 9 7 25 25 H 1.08999 * 113.76201 * 336.24585 * 11 9 7 26 26 H 1.09002 * 113.75477 * 107.60682 * 11 9 7 27 27 H 1.08995 * 109.47054 * 190.56995 * 13 12 11 28 28 H 1.09004 * 109.47302 * 310.56534 * 13 12 11 29 29 H 1.07997 * 120.41925 * 359.96959 * 15 14 13 30 30 H 1.07996 * 119.62180 * 180.02562 * 19 18 16 31 31 H 1.08994 * 113.76177 * 221.08725 * 22 12 11 32 32 H 1.08999 * 113.86386 * 89.72782 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6526 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4650 -2.1291 0.0278 9 6 3.5112 -1.1943 -0.0369 10 8 4.0946 -0.4297 1.0200 11 6 4.0964 -0.8796 -1.4255 12 7 5.0693 -1.9627 -1.1491 13 6 5.2702 -2.8072 -2.3342 14 6 6.0318 -2.0332 -3.3792 15 6 7.3709 -2.2944 -3.6191 16 6 8.0386 -1.5624 -4.5872 17 9 9.3448 -1.8091 -4.8283 18 7 7.4130 -0.6264 -5.2768 19 6 6.1389 -0.3510 -5.0751 20 6 5.4063 -1.0449 -4.1283 21 9 4.1001 -0.7614 -3.9317 22 6 4.1266 -2.5958 -0.2006 23 1 -0.4850 -0.8397 -0.0266 24 1 3.9151 0.5188 0.9647 25 1 3.4166 -1.0994 -2.2487 26 1 4.5479 0.1099 -1.4977 27 1 5.8367 -3.6957 -2.0554 28 1 4.3019 -3.1050 -2.7366 29 1 7.8881 -3.0585 -3.0578 30 1 5.6607 0.4214 -5.6590 31 1 4.6020 -2.9749 0.7039 32 1 3.4549 -3.3190 -0.6630 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347466679.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:30 Heat of formation + Delta-G solvation = -42.030056 kcal Electronic energy + Delta-G solvation = -20920.009427 eV Core-core repulsion = 17325.992093 eV Total energy + Delta-G solvation = -3594.017334 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.20664 -49.14689 -40.29245 -39.28806 -35.25671 -33.36169 -32.53417 -30.67794 -28.95114 -26.08939 -25.58421 -24.00846 -23.28173 -21.26950 -19.28190 -18.26285 -18.00690 -17.72234 -17.55998 -16.59637 -16.01928 -15.57375 -15.13783 -14.99523 -14.91481 -14.57254 -13.90093 -13.69942 -13.48642 -13.28985 -12.96553 -12.69540 -12.38673 -12.06164 -11.70646 -11.33799 -11.17819 -10.60436 -10.33798 -10.09200 -9.99863 -9.57584 -9.40468 -9.02737 -8.75365 -8.54969 -8.20397 -6.61717 -4.38351 0.54098 0.70018 3.15422 3.18494 3.22266 3.28417 3.38574 3.79944 4.09519 4.26466 4.38575 4.49706 4.51338 4.88731 5.02443 5.11816 5.31026 5.42033 5.52237 5.62830 5.66826 5.79052 5.82987 6.11132 6.32434 6.34955 6.53515 6.73805 6.81167 7.24027 7.50864 7.66914 8.13182 8.58962 8.67843 9.36672 10.72764 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.028476 B = 0.005873 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.042249 B = 4766.413614 C = 5096.714551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.036 3.964 3 Si 1.035 2.965 4 H -0.276 1.276 5 H -0.269 1.269 6 H -0.283 1.283 7 C -0.608 4.608 8 H 0.066 0.934 9 C 0.203 3.797 10 O -0.556 6.556 11 C -0.048 4.048 12 N -0.474 5.474 13 C 0.051 3.949 14 C -0.029 4.029 15 C -0.153 4.153 16 C 0.294 3.706 17 F -0.110 7.110 18 N -0.492 5.492 19 C 0.110 3.890 20 C 0.048 3.952 21 F -0.109 7.109 22 C 0.025 3.975 23 H 0.271 0.729 24 H 0.350 0.650 25 H 0.095 0.905 26 H 0.074 0.926 27 H 0.091 0.909 28 H 0.062 0.938 29 H 0.157 0.843 30 H 0.180 0.820 31 H 0.082 0.918 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.032 -3.499 -8.986 15.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.171 4.171 3 Si 0.864 3.136 4 H -0.203 1.203 5 H -0.196 1.196 6 H -0.210 1.210 7 C -0.646 4.646 8 H 0.084 0.916 9 C 0.162 3.838 10 O -0.365 6.365 11 C -0.177 4.177 12 N -0.197 5.197 13 C -0.077 4.077 14 C -0.038 4.038 15 C -0.175 4.175 16 C 0.140 3.860 17 F -0.089 7.089 18 N -0.206 5.206 19 C -0.048 4.048 20 C 0.026 3.974 21 F -0.087 7.087 22 C -0.103 4.103 23 H 0.081 0.919 24 H 0.200 0.800 25 H 0.113 0.887 26 H 0.093 0.907 27 H 0.109 0.891 28 H 0.080 0.920 29 H 0.175 0.825 30 H 0.197 0.803 31 H 0.101 0.899 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 13.174 -1.860 -9.202 16.177 hybrid contribution -1.189 -1.870 -0.010 2.216 sum 11.986 -3.731 -9.212 15.571 Atomic orbital electron populations 1.70790 1.06754 1.30707 1.44808 1.25773 0.96424 1.02531 0.92329 0.84252 0.75527 0.76026 0.77764 1.20254 1.19590 1.20964 1.22359 0.89729 0.95746 1.56769 0.91605 1.20464 0.92207 0.88269 0.82876 1.86445 1.78007 1.20840 1.51175 1.25687 0.93812 0.95426 1.02761 1.68797 1.35950 1.07357 1.07578 1.21670 0.98941 0.96268 0.90841 1.20300 0.93717 0.94613 0.95139 1.21643 0.93950 1.02697 0.99171 1.18068 0.80069 0.93857 0.93990 1.91629 1.31353 1.92446 1.93483 1.67013 1.10395 1.16535 1.26699 1.22586 0.87928 0.98611 0.95673 1.18693 0.80753 0.98654 0.99304 1.91554 1.31395 1.92272 1.93523 1.23966 0.92769 0.97527 0.96014 0.91885 0.80010 0.88684 0.90745 0.89062 0.91974 0.82501 0.80334 0.89912 0.90832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.46 13.70 55.43 0.76 -25.70 16 2 C 0.04 1.00 5.47 -17.82 -0.10 0.90 16 3 Si 1.04 23.65 24.77 -169.99 -4.21 19.44 16 4 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 5 H -0.27 -5.60 4.72 56.52 0.27 -5.33 16 6 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 7 C -0.61 -16.43 9.05 -34.44 -0.31 -16.74 16 8 H 0.07 1.89 8.04 -52.49 -0.42 1.47 16 9 C 0.20 4.76 1.06 -90.83 -0.10 4.66 16 10 O -0.56 -13.41 13.26 -35.23 -0.47 -13.87 16 11 C -0.05 -1.01 4.20 -2.63 -0.01 -1.02 16 12 N -0.47 -8.77 6.25 -239.47 -1.50 -10.27 16 13 C 0.05 0.74 4.97 -4.98 -0.02 0.72 16 14 C -0.03 -0.39 5.38 -104.27 -0.56 -0.95 16 15 C -0.15 -1.81 9.74 -39.37 -0.38 -2.19 16 16 C 0.29 3.75 8.41 -17.36 -0.15 3.60 16 17 F -0.11 -1.37 17.29 2.25 0.04 -1.33 16 18 N -0.49 -6.59 10.37 -13.55 -0.14 -6.73 16 19 C 0.11 1.35 11.17 -17.47 -0.20 1.15 16 20 C 0.05 0.67 6.78 -39.29 -0.27 0.41 16 21 F -0.11 -1.72 13.13 2.25 0.03 -1.69 16 22 C 0.03 0.51 7.36 -2.76 -0.02 0.49 16 23 H 0.27 7.93 8.71 -40.82 -0.36 7.58 16 24 H 0.35 7.87 4.33 45.56 0.20 8.06 16 25 H 0.10 2.00 5.27 -51.93 -0.27 1.72 16 26 H 0.07 1.58 6.55 -51.93 -0.34 1.24 16 27 H 0.09 1.10 8.01 -51.93 -0.42 0.69 16 28 H 0.06 0.92 7.68 -51.93 -0.40 0.52 16 29 H 0.16 1.46 8.05 -52.49 -0.42 1.04 16 30 H 0.18 1.66 8.06 -52.49 -0.42 1.23 16 31 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 32 H 0.07 1.39 7.75 -51.93 -0.40 0.99 16 LS Contribution 271.86 15.07 4.10 4.10 Total: -1.00 -30.26 271.86 -6.11 -36.37 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: -2.61 Total: 8.66 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -2.11 Total: -8.97 kcal Atomic # 7 Polarization: -41.82 SS G_CDS: -0.88 Total: -42.70 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.47 Total: -13.87 kcal Atomic # 9 Polarization: -3.09 SS G_CDS: 0.07 Total: -3.02 kcal Atomic # 14 Polarization: 23.65 SS G_CDS: -4.21 Total: 19.44 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.26 -6.11 -36.37 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347466679.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.660 kcal (2) G-P(sol) polarization free energy of solvation -30.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds