Wall clock time and date at job start Mon Mar 30 2020 01:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 119.99980 * 2 1 4 4 H 1.48501 * 109.46788 * 89.99733 * 3 2 1 5 5 H 1.48501 * 109.46992 * 209.99765 * 3 2 1 6 6 H 1.48495 * 109.46895 * 329.99807 * 3 2 1 7 7 C 1.37878 * 120.00501 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99630 * 358.35626 * 7 2 1 9 9 C 1.50700 * 120.00369 * 178.35710 * 7 2 1 10 10 O 1.42894 * 112.93643 * 55.32346 * 9 7 2 11 11 C 1.53938 * 113.73131 * 283.75207 * 9 7 2 12 12 N 1.48190 * 86.10253 * 221.95947 * 11 9 7 13 13 C 1.46895 * 111.06990 * 137.52568 * 12 11 9 14 14 C 1.50697 * 109.47114 * 70.56332 * 13 12 11 15 15 C 1.38534 * 120.77925 * 105.00498 * 14 13 12 16 16 C 1.38519 * 119.16586 * 180.02562 * 15 14 13 17 17 F 1.35097 * 119.62131 * 179.97438 * 16 15 14 18 18 N 1.32031 * 120.75052 * 359.97438 * 16 15 14 19 19 C 1.31910 * 121.72058 * 0.02562 * 18 16 15 20 20 C 1.38367 * 120.75636 * 359.71380 * 19 18 16 21 21 F 1.35099 * 120.41252 * 180.30686 * 20 19 18 22 22 C 1.47958 * 90.79824 * 24.60360 * 12 11 9 23 23 H 0.97005 * 119.99891 * 178.18868 * 1 2 3 24 24 H 0.96694 * 114.00278 * 294.04456 * 10 9 7 25 25 H 1.08999 * 113.76201 * 336.24585 * 11 9 7 26 26 H 1.09002 * 113.75477 * 107.60682 * 11 9 7 27 27 H 1.08995 * 109.47054 * 190.56995 * 13 12 11 28 28 H 1.09004 * 109.47302 * 310.56534 * 13 12 11 29 29 H 1.07997 * 120.41925 * 359.96959 * 15 14 13 30 30 H 1.07996 * 119.62180 * 180.02562 * 19 18 16 31 31 H 1.08994 * 113.76177 * 221.08725 * 22 12 11 32 32 H 1.08999 * 113.86386 * 89.72782 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6526 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4650 -2.1291 0.0278 9 6 3.5112 -1.1943 -0.0369 10 8 4.0946 -0.4297 1.0200 11 6 4.0964 -0.8796 -1.4255 12 7 5.0693 -1.9627 -1.1491 13 6 5.2702 -2.8072 -2.3342 14 6 6.0318 -2.0332 -3.3792 15 6 7.3709 -2.2944 -3.6191 16 6 8.0386 -1.5624 -4.5872 17 9 9.3448 -1.8091 -4.8283 18 7 7.4130 -0.6264 -5.2768 19 6 6.1389 -0.3510 -5.0751 20 6 5.4063 -1.0449 -4.1283 21 9 4.1001 -0.7614 -3.9317 22 6 4.1266 -2.5958 -0.2006 23 1 -0.4850 -0.8397 -0.0266 24 1 3.9151 0.5188 0.9647 25 1 3.4166 -1.0994 -2.2487 26 1 4.5479 0.1099 -1.4977 27 1 5.8367 -3.6957 -2.0554 28 1 4.3019 -3.1050 -2.7366 29 1 7.8881 -3.0585 -3.0578 30 1 5.6607 0.4214 -5.6590 31 1 4.6020 -2.9749 0.7039 32 1 3.4549 -3.3190 -0.6630 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347466679.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:30 Heat of formation + Delta-G solvation = -67.086293 kcal Electronic energy + Delta-G solvation = -20921.095947 eV Core-core repulsion = 17325.992093 eV Total energy + Delta-G solvation = -3595.103854 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.26660 -50.16267 -41.45300 -40.72962 -36.87578 -34.68774 -34.55999 -31.65613 -30.39067 -27.76097 -27.21242 -25.09432 -24.62693 -22.59596 -20.99095 -20.02021 -19.24198 -18.77716 -18.69694 -17.87926 -17.42530 -17.01329 -16.64283 -16.25351 -16.05308 -15.76661 -15.24442 -14.98246 -14.89204 -14.71821 -14.21260 -14.10407 -13.85622 -13.65990 -13.21640 -12.86996 -12.80205 -12.24981 -12.07370 -11.53719 -11.28251 -11.08065 -11.00078 -10.79598 -10.37460 -10.01353 -9.77649 -8.78542 -6.58016 -0.43934 -0.28107 1.34247 1.43398 1.57290 2.17419 2.33559 2.37027 2.80808 2.84796 2.94730 3.13039 3.43155 3.54147 3.65146 3.90893 4.06198 4.06918 4.17339 4.32435 4.49338 4.55499 4.64996 4.76658 4.79322 4.86936 5.10448 5.22636 5.37643 5.68227 5.88200 6.01489 6.28140 6.38948 6.82337 7.25935 8.53131 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.028476 B = 0.005873 C = 0.005492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.042249 B = 4766.413614 C = 5096.714551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.013 4.013 3 Si 1.068 2.932 4 H -0.258 1.258 5 H -0.238 1.238 6 H -0.285 1.285 7 C -0.612 4.612 8 H 0.032 0.968 9 C 0.180 3.820 10 O -0.562 6.562 11 C -0.034 4.034 12 N -0.469 5.469 13 C 0.051 3.949 14 C -0.039 4.039 15 C -0.138 4.138 16 C 0.289 3.711 17 F -0.109 7.109 18 N -0.507 5.507 19 C 0.118 3.882 20 C 0.031 3.969 21 F -0.124 7.124 22 C 0.032 3.968 23 H 0.256 0.744 24 H 0.356 0.644 25 H 0.090 0.910 26 H 0.074 0.926 27 H 0.123 0.877 28 H 0.058 0.942 29 H 0.186 0.814 30 H 0.205 0.795 31 H 0.091 0.909 32 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.537 -3.386 -9.615 17.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.213 4.213 3 Si 0.890 3.110 4 H -0.183 1.183 5 H -0.163 1.163 6 H -0.212 1.212 7 C -0.650 4.650 8 H 0.050 0.950 9 C 0.140 3.860 10 O -0.372 6.372 11 C -0.162 4.162 12 N -0.192 5.192 13 C -0.077 4.077 14 C -0.048 4.048 15 C -0.159 4.159 16 C 0.136 3.864 17 F -0.088 7.088 18 N -0.221 5.221 19 C -0.039 4.039 20 C 0.009 3.991 21 F -0.103 7.103 22 C -0.096 4.096 23 H 0.065 0.935 24 H 0.206 0.794 25 H 0.108 0.892 26 H 0.092 0.908 27 H 0.141 0.859 28 H 0.076 0.924 29 H 0.203 0.797 30 H 0.222 0.778 31 H 0.109 0.891 32 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 15.702 -1.777 -9.830 18.611 hybrid contribution -1.949 -2.010 0.157 2.804 sum 13.753 -3.787 -9.674 17.236 Atomic orbital electron populations 1.70917 1.08018 1.29855 1.47816 1.27170 0.96362 1.06303 0.91437 0.83883 0.75774 0.72151 0.79195 1.18303 1.16281 1.21179 1.22562 0.92245 0.94382 1.55847 0.94977 1.20639 0.90156 0.90941 0.84289 1.86422 1.77642 1.21491 1.51646 1.25404 0.94054 0.96403 1.00382 1.68691 1.34263 1.07144 1.09054 1.21730 0.99611 0.96768 0.89560 1.20272 0.94372 0.94885 0.95268 1.21813 0.93055 1.02570 0.98503 1.18229 0.80169 0.93907 0.94143 1.91635 1.31277 1.92414 1.93474 1.67057 1.10832 1.17060 1.27178 1.22920 0.87401 0.98512 0.95107 1.18944 0.80315 0.99515 1.00333 1.91509 1.32518 1.92509 1.93731 1.23896 0.93005 0.95735 0.96996 0.93458 0.79351 0.89198 0.90757 0.85906 0.92354 0.79698 0.77835 0.89082 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.51 13.70 21.45 0.29 -56.21 16 2 C -0.01 -0.73 5.47 84.66 0.46 -0.27 16 3 Si 1.07 46.84 24.77 68.60 1.70 48.54 16 4 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 5 H -0.24 -9.15 4.72 99.48 0.47 -8.68 16 6 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 7 C -0.61 -33.61 9.05 25.60 0.23 -33.38 16 8 H 0.03 1.92 8.04 -2.91 -0.02 1.89 16 9 C 0.18 8.28 1.06 -10.89 -0.01 8.27 16 10 O -0.56 -26.11 13.26 -148.98 -1.98 -28.09 16 11 C -0.03 -1.34 4.20 86.37 0.36 -0.98 16 12 N -0.47 -16.14 6.25 -914.74 -5.72 -21.86 16 13 C 0.05 1.34 4.97 85.56 0.42 1.76 16 14 C -0.04 -0.95 5.38 -19.64 -0.11 -1.06 16 15 C -0.14 -2.78 9.74 22.41 0.22 -2.56 16 16 C 0.29 6.54 8.41 84.73 0.71 7.25 16 17 F -0.11 -2.42 17.29 44.97 0.78 -1.64 16 18 N -0.51 -12.29 10.37 -196.77 -2.04 -14.33 16 19 C 0.12 2.61 11.17 84.71 0.95 3.56 16 20 C 0.03 0.80 6.78 22.46 0.15 0.95 16 21 F -0.12 -3.75 13.13 44.97 0.59 -3.16 16 22 C 0.03 1.22 7.36 86.41 0.64 1.86 16 23 H 0.26 15.74 8.71 -92.70 -0.81 14.93 16 24 H 0.36 15.18 4.33 -74.06 -0.32 14.86 16 25 H 0.09 3.69 5.27 -2.39 -0.01 3.68 16 26 H 0.07 2.96 6.55 -2.39 -0.02 2.94 16 27 H 0.12 2.46 8.01 -2.39 -0.02 2.44 16 28 H 0.06 1.61 7.68 -2.38 -0.02 1.59 16 29 H 0.19 2.60 8.05 -2.91 -0.02 2.58 16 30 H 0.21 3.25 8.06 -2.91 -0.02 3.22 16 31 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 32 H 0.08 2.88 7.75 -2.39 -0.02 2.87 16 Total: -1.00 -65.63 271.86 -1.76 -67.40 By element: Atomic # 1 Polarization: 23.36 SS G_CDS: 0.58 Total: 23.94 kcal Atomic # 6 Polarization: -18.62 SS G_CDS: 4.03 Total: -14.59 kcal Atomic # 7 Polarization: -84.94 SS G_CDS: -7.46 Total: -92.40 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -1.98 Total: -28.09 kcal Atomic # 9 Polarization: -6.16 SS G_CDS: 1.37 Total: -4.80 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 1.70 Total: 48.54 kcal Total: -65.63 -1.76 -67.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347466679.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.310 kcal (2) G-P(sol) polarization free energy of solvation -65.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds