Wall clock time and date at job start Mon Mar 30 2020 01:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.46926 * 2 1 4 4 C 1.35313 * 125.86753 * 125.33183 * 3 2 1 5 5 C 1.35351 * 106.17914 * 180.11515 * 4 3 2 6 6 C 1.50699 * 126.75692 * 179.84733 * 5 4 3 7 7 N 1.46499 * 109.46700 * 94.71126 * 6 5 4 8 8 C 1.34784 * 119.99893 * 180.02562 * 7 6 5 9 9 O 1.21283 * 119.99649 * 0.02562 * 8 7 6 10 10 C 1.50697 * 119.99774 * 179.72962 * 8 7 6 11 11 S 1.81008 * 109.46759 * 180.02562 * 10 8 7 12 12 C 1.76198 * 99.99946 * 179.97438 * 11 10 8 13 13 H 1.08000 * 119.99996 * 359.97438 * 12 11 10 14 14 C 1.38798 * 120.00252 * 179.97438 * 12 11 10 15 15 N 1.31635 * 119.99702 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00159 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47227 * 90.00206 * 16 14 12 18 18 H 1.48500 * 109.46795 * 210.00220 * 16 14 12 19 19 H 1.48500 * 109.46955 * 329.99779 * 16 14 12 20 20 N 1.33775 * 106.49330 * 359.58901 * 5 4 3 21 21 N 1.28636 * 108.88801 * 0.26423 * 20 5 4 22 22 H 1.09002 * 109.47691 * 59.99727 * 1 2 3 23 23 H 1.09007 * 109.47134 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46962 * 299.99975 * 1 2 3 25 25 H 1.09005 * 109.46962 * 240.00025 * 2 1 3 26 26 H 1.08993 * 109.46947 * 120.00158 * 2 1 3 27 27 H 1.08000 * 126.91088 * 359.96517 * 4 3 2 28 28 H 1.08998 * 109.46743 * 334.71602 * 6 5 4 29 29 H 1.08994 * 109.47542 * 214.71461 * 6 5 4 30 30 H 0.97005 * 120.00261 * 0.02562 * 7 6 5 31 31 H 1.09001 * 109.46809 * 299.99238 * 10 8 7 32 32 H 1.08993 * 109.47525 * 59.99679 * 10 8 7 33 33 H 0.97000 * 119.99806 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8804 1.9173 0.8946 5 6 3.0545 3.2074 0.5241 6 6 3.9240 4.2321 1.2061 7 7 5.2359 4.2700 0.5554 8 6 6.1844 5.1182 0.9999 9 8 5.9518 5.8497 1.9390 10 6 7.5360 5.1529 0.3344 11 16 8.5804 6.3836 1.1535 12 6 10.0539 6.2164 0.2021 13 1 10.0956 5.5035 -0.6080 14 6 11.1612 7.0009 0.4938 15 7 11.1102 7.8703 1.4809 16 14 12.7232 6.8242 -0.5154 17 1 12.6756 7.7581 -1.6688 18 1 13.8993 7.1445 0.3328 19 1 12.8363 5.4293 -1.0120 20 7 2.3074 3.3925 -0.5701 21 7 1.7059 2.2916 -0.8547 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 3.3359 1.4171 1.7365 28 1 4.0465 3.9639 2.2554 29 1 3.4542 5.2130 1.1342 30 1 5.4221 3.6847 -0.1955 31 1 8.0038 4.1714 0.4108 32 1 7.4171 5.4180 -0.7161 33 1 11.8841 8.4183 1.6850 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347847512.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:54 Heat of formation + Delta-G solvation = 57.788783 kcal Electronic energy + Delta-G solvation = -17166.214715 eV Core-core repulsion = 14162.658988 eV Total energy + Delta-G solvation = -3003.555726 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.58767 -39.07498 -36.09625 -34.60831 -32.40130 -31.68040 -31.23416 -29.33364 -26.19789 -25.37940 -25.11052 -22.21219 -21.16481 -20.35993 -18.04586 -17.61834 -16.84184 -16.27913 -15.83039 -15.41804 -14.98605 -14.88428 -14.77851 -13.95445 -13.71290 -13.35437 -13.18882 -12.97022 -12.71713 -12.53513 -12.16590 -11.85884 -11.71353 -11.07333 -11.03728 -10.99753 -10.74822 -10.44556 -9.82501 -9.75481 -9.24569 -9.04439 -8.87084 -8.20366 -6.46664 -6.19015 -3.89162 1.24038 1.94189 2.11254 3.13004 3.14344 3.24548 3.30763 3.37628 3.80320 3.90245 4.09526 4.22642 4.23100 4.47249 4.51470 4.75781 4.93358 4.98875 5.15664 5.16084 5.24128 5.44286 5.54424 5.74000 5.74769 5.88125 5.94239 6.18696 6.21401 6.59356 7.62387 7.73171 8.21132 8.38054 8.63368 9.26328 10.88415 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.046972 B = 0.002898 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.956184 B = 9659.315186 C = 9992.767725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.111 3.889 3 N -0.294 5.294 4 C -0.030 4.030 5 C -0.036 4.036 6 C 0.210 3.790 7 N -0.734 5.734 8 C 0.534 3.466 9 O -0.517 6.517 10 C -0.152 4.152 11 S -0.059 6.059 12 C -0.535 4.535 13 H 0.072 0.928 14 C 0.073 3.927 15 N -0.868 5.868 16 Si 0.919 3.081 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.273 1.273 20 N -0.252 5.252 21 N -0.083 5.083 22 H 0.075 0.925 23 H 0.083 0.917 24 H 0.064 0.936 25 H 0.100 0.900 26 H 0.107 0.893 27 H 0.194 0.806 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.399 0.601 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.795 -18.930 -1.863 26.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.010 4.010 3 N -0.087 5.087 4 C -0.182 4.182 5 C -0.174 4.174 6 C 0.084 3.916 7 N -0.389 5.389 8 C 0.320 3.680 9 O -0.391 6.391 10 C -0.303 4.303 11 S 0.167 5.833 12 C -0.683 4.683 13 H 0.091 0.909 14 C -0.136 4.136 15 N -0.503 5.503 16 Si 0.745 3.255 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.197 1.197 20 N -0.120 5.120 21 N -0.063 5.063 22 H 0.094 0.906 23 H 0.102 0.898 24 H 0.084 0.916 25 H 0.119 0.881 26 H 0.125 0.875 27 H 0.211 0.789 28 H 0.103 0.897 29 H 0.103 0.897 30 H 0.233 0.767 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.943 -17.263 -1.443 26.416 hybrid contribution 1.904 -1.759 -1.142 2.832 sum -18.039 -19.022 -2.585 26.343 Atomic orbital electron populations 1.22089 0.92544 1.03815 1.04164 1.22136 0.97071 0.76325 1.05438 1.47525 1.30257 1.12132 1.18809 1.23524 0.99411 0.95469 0.99815 1.22019 1.03410 0.94611 0.97396 1.19311 0.81035 0.96271 0.94953 1.46009 1.12861 1.43009 1.37035 1.20293 0.85328 0.78916 0.83418 1.90708 1.80603 1.40164 1.27626 1.23525 0.95919 1.06690 1.04182 1.85384 1.07897 1.45894 1.44114 1.22871 0.98820 1.26568 1.20056 0.90941 1.24994 0.98660 0.94518 0.95451 1.70022 1.30702 1.21860 1.27718 0.86167 0.81171 0.78576 0.79573 1.20270 1.20776 1.19734 1.75150 1.07999 1.15789 1.13021 1.78310 1.20675 0.92795 1.14491 0.90582 0.89782 0.91641 0.88138 0.87495 0.78920 0.89692 0.89658 0.76741 0.89220 0.89142 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.58 10.04 37.16 0.37 -0.21 16 2 C 0.11 0.40 7.17 -4.04 -0.03 0.38 16 3 N -0.29 -2.41 3.44 -61.27 -0.21 -2.62 16 4 C -0.03 -0.25 11.50 -17.05 -0.20 -0.44 16 5 C -0.04 -0.41 6.61 -82.78 -0.55 -0.96 16 6 C 0.21 2.61 6.23 -5.19 -0.03 2.58 16 7 N -0.73 -10.33 5.55 -61.48 -0.34 -10.68 16 8 C 0.53 10.09 7.85 -10.98 -0.09 10.00 16 9 O -0.52 -11.72 15.86 5.56 0.09 -11.63 16 10 C -0.15 -3.12 6.16 36.00 0.22 -2.90 16 11 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 12 C -0.53 -15.35 9.50 30.94 0.29 -15.06 16 13 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 14 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 15 N -0.87 -26.31 13.22 55.49 0.73 -25.58 16 16 Si 0.92 21.56 29.55 -169.99 -5.02 16.53 16 17 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 20 N -0.25 -3.45 12.41 33.29 0.41 -3.03 16 21 N -0.08 -0.99 12.91 60.35 0.78 -0.21 16 22 H 0.08 0.39 8.12 -51.93 -0.42 -0.03 16 23 H 0.08 0.11 8.14 -51.93 -0.42 -0.31 16 24 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 25 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.11 0.10 8.07 -51.93 -0.42 -0.32 16 27 H 0.19 0.86 8.06 -52.49 -0.42 0.44 16 28 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.40 4.81 8.46 -40.82 -0.35 4.47 16 31 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 32 H 0.09 1.74 8.14 -51.92 -0.42 1.31 16 33 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 311.22 15.07 4.69 4.69 Total: -1.00 -37.00 311.22 -5.29 -42.29 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -4.11 Total: -1.32 kcal Atomic # 6 Polarization: -4.51 SS G_CDS: -0.10 Total: -4.61 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 1.37 Total: -42.12 kcal Atomic # 8 Polarization: -11.72 SS G_CDS: 0.09 Total: -11.63 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -37.00 -5.29 -42.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347847512.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.081 kcal (2) G-P(sol) polarization free energy of solvation -36.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.292 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds