Wall clock time and date at job start Mon Mar 30 2020 01:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46495 * 109.46926 * 2 1 4 4 C 1.35313 * 125.86753 * 125.33183 * 3 2 1 5 5 C 1.35351 * 106.17914 * 180.11515 * 4 3 2 6 6 C 1.50699 * 126.75692 * 179.84733 * 5 4 3 7 7 N 1.46499 * 109.46700 * 94.71126 * 6 5 4 8 8 C 1.34784 * 119.99893 * 180.02562 * 7 6 5 9 9 O 1.21283 * 119.99649 * 0.02562 * 8 7 6 10 10 C 1.50697 * 119.99774 * 179.72962 * 8 7 6 11 11 S 1.81008 * 109.46759 * 180.02562 * 10 8 7 12 12 C 1.76198 * 99.99946 * 179.97438 * 11 10 8 13 13 H 1.08000 * 119.99996 * 359.97438 * 12 11 10 14 14 C 1.38798 * 120.00252 * 179.97438 * 12 11 10 15 15 N 1.31635 * 119.99702 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00159 * 180.02562 * 14 12 11 17 17 H 1.48494 * 109.47227 * 90.00206 * 16 14 12 18 18 H 1.48500 * 109.46795 * 210.00220 * 16 14 12 19 19 H 1.48500 * 109.46955 * 329.99779 * 16 14 12 20 20 N 1.33775 * 106.49330 * 359.58901 * 5 4 3 21 21 N 1.28636 * 108.88801 * 0.26423 * 20 5 4 22 22 H 1.09002 * 109.47691 * 59.99727 * 1 2 3 23 23 H 1.09007 * 109.47134 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.46962 * 299.99975 * 1 2 3 25 25 H 1.09005 * 109.46962 * 240.00025 * 2 1 3 26 26 H 1.08993 * 109.46947 * 120.00158 * 2 1 3 27 27 H 1.08000 * 126.91088 * 359.96517 * 4 3 2 28 28 H 1.08998 * 109.46743 * 334.71602 * 6 5 4 29 29 H 1.08994 * 109.47542 * 214.71461 * 6 5 4 30 30 H 0.97005 * 120.00261 * 0.02562 * 7 6 5 31 31 H 1.09001 * 109.46809 * 299.99238 * 10 8 7 32 32 H 1.08993 * 109.47525 * 59.99679 * 10 8 7 33 33 H 0.97000 * 119.99806 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8804 1.9173 0.8946 5 6 3.0545 3.2074 0.5241 6 6 3.9240 4.2321 1.2061 7 7 5.2359 4.2700 0.5554 8 6 6.1844 5.1182 0.9999 9 8 5.9518 5.8497 1.9390 10 6 7.5360 5.1529 0.3344 11 16 8.5804 6.3836 1.1535 12 6 10.0539 6.2164 0.2021 13 1 10.0956 5.5035 -0.6080 14 6 11.1612 7.0009 0.4938 15 7 11.1102 7.8703 1.4809 16 14 12.7232 6.8242 -0.5154 17 1 12.6756 7.7581 -1.6688 18 1 13.8993 7.1445 0.3328 19 1 12.8363 5.4293 -1.0120 20 7 2.3074 3.3925 -0.5701 21 7 1.7059 2.2916 -0.8547 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 3.3359 1.4171 1.7365 28 1 4.0465 3.9639 2.2554 29 1 3.4542 5.2130 1.1342 30 1 5.4221 3.6847 -0.1955 31 1 8.0038 4.1714 0.4108 32 1 7.4171 5.4180 -0.7161 33 1 11.8841 8.4183 1.6850 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001347847512.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:19:54 Heat of formation + Delta-G solvation = 29.259285 kcal Electronic energy + Delta-G solvation = -17167.451847 eV Core-core repulsion = 14162.658988 eV Total energy + Delta-G solvation = -3004.792858 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -44.32811 -40.54755 -36.81177 -35.69398 -34.56744 -32.72036 -31.77133 -30.73590 -27.76296 -27.09040 -25.58625 -22.92813 -21.89549 -21.77644 -19.86310 -18.45156 -17.86762 -17.42348 -17.06119 -16.86262 -16.62365 -15.84644 -15.77560 -15.36471 -14.85885 -14.51608 -14.42101 -14.13123 -13.65600 -13.39799 -13.14854 -13.05381 -12.87741 -12.72541 -12.59526 -12.37707 -11.82014 -11.72186 -11.20633 -11.12906 -10.99512 -10.32233 -10.24835 -10.14920 -8.64415 -8.33096 -6.10755 0.56964 1.13251 1.34620 1.43647 1.45581 1.51321 1.62206 1.62905 2.28543 2.46504 3.00901 3.19873 3.34385 3.62244 3.83772 3.97927 3.99803 4.10259 4.29806 4.31991 4.39848 4.53503 4.60967 4.74825 4.75572 4.93111 5.02291 5.23438 5.35513 5.43596 5.65206 6.21530 6.46446 7.08198 7.21653 7.43428 8.76101 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.046972 B = 0.002898 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 595.956184 B = 9659.315186 C = 9992.767725 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.100 3.900 3 N -0.284 5.284 4 C -0.005 4.005 5 C -0.058 4.058 6 C 0.214 3.786 7 N -0.709 5.709 8 C 0.538 3.462 9 O -0.561 6.561 10 C -0.129 4.129 11 S -0.148 6.148 12 C -0.547 4.547 13 H 0.082 0.918 14 C 0.013 3.987 15 N -0.911 5.911 16 Si 0.999 3.001 17 H -0.269 1.269 18 H -0.277 1.277 19 H -0.258 1.258 20 N -0.295 5.295 21 N -0.111 5.111 22 H 0.053 0.947 23 H 0.110 0.890 24 H 0.056 0.944 25 H 0.113 0.887 26 H 0.145 0.855 27 H 0.237 0.763 28 H 0.101 0.899 29 H 0.066 0.934 30 H 0.412 0.588 31 H 0.113 0.887 32 H 0.105 0.895 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.631 -21.944 -2.531 28.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.018 4.018 3 N -0.078 5.078 4 C -0.158 4.158 5 C -0.197 4.197 6 C 0.089 3.911 7 N -0.363 5.363 8 C 0.324 3.676 9 O -0.439 6.439 10 C -0.281 4.281 11 S 0.079 5.921 12 C -0.694 4.694 13 H 0.100 0.900 14 C -0.192 4.192 15 N -0.547 5.547 16 Si 0.820 3.180 17 H -0.195 1.195 18 H -0.202 1.202 19 H -0.182 1.182 20 N -0.162 5.162 21 N -0.091 5.091 22 H 0.072 0.928 23 H 0.128 0.872 24 H 0.075 0.925 25 H 0.131 0.869 26 H 0.163 0.837 27 H 0.253 0.747 28 H 0.119 0.881 29 H 0.084 0.916 30 H 0.248 0.752 31 H 0.131 0.869 32 H 0.124 0.876 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.834 -20.335 -2.158 28.488 hybrid contribution 1.686 -0.965 -0.931 2.155 sum -18.147 -21.301 -3.089 28.153 Atomic orbital electron populations 1.22078 0.92623 1.05034 1.02603 1.22647 0.97061 0.74175 1.07948 1.47946 1.29205 1.13010 1.17600 1.24075 0.97736 0.94224 0.99746 1.21884 1.04215 0.95773 0.97811 1.19303 0.79865 0.96103 0.95805 1.45764 1.12549 1.41335 1.36678 1.19989 0.85476 0.79224 0.82875 1.90699 1.81270 1.42267 1.29667 1.23365 0.95588 1.05128 1.03978 1.85544 1.10223 1.49759 1.46525 1.23206 0.99120 1.26897 1.20211 0.89986 1.26129 1.02598 0.93875 0.96602 1.70184 1.31950 1.22946 1.29641 0.84950 0.76050 0.79255 0.77697 1.19469 1.20211 1.18187 1.75088 1.09327 1.17234 1.14571 1.78236 1.21589 0.93252 1.15975 0.92825 0.87158 0.92492 0.86881 0.83742 0.74709 0.88057 0.91572 0.75212 0.86902 0.87649 0.91990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.79 10.04 71.98 0.72 -0.07 16 2 C 0.10 0.39 7.17 86.38 0.62 1.01 16 3 N -0.28 -3.95 3.44 -347.75 -1.20 -5.15 16 4 C 0.00 -0.06 11.50 83.49 0.96 0.90 16 5 C -0.06 -1.22 6.61 41.60 0.28 -0.94 16 6 C 0.21 5.11 6.23 85.63 0.53 5.64 16 7 N -0.71 -18.94 5.55 -466.79 -2.59 -21.53 16 8 C 0.54 20.02 7.85 87.65 0.69 20.71 16 9 O -0.56 -25.82 15.86 -3.04 -0.05 -25.87 16 10 C -0.13 -5.18 6.16 71.24 0.44 -4.74 16 11 S -0.15 -8.24 20.57 -56.49 -1.16 -9.41 16 12 C -0.55 -31.40 9.50 67.95 0.65 -30.75 16 13 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 14 C 0.01 0.73 5.49 84.86 0.47 1.19 16 15 N -0.91 -56.18 13.22 21.65 0.29 -55.90 16 16 Si 1.00 43.83 29.55 68.60 2.03 45.86 16 17 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 18 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 19 H -0.26 -10.60 7.11 99.48 0.71 -9.90 16 20 N -0.30 -7.96 12.41 -48.60 -0.60 -8.57 16 21 N -0.11 -2.56 12.91 37.02 0.48 -2.08 16 22 H 0.05 0.51 8.12 -2.39 -0.02 0.49 16 23 H 0.11 -0.05 8.14 -2.38 -0.02 -0.07 16 24 H 0.06 0.38 8.14 -2.38 -0.02 0.36 16 25 H 0.11 0.23 8.14 -2.38 -0.02 0.21 16 26 H 0.14 -0.47 8.07 -2.39 -0.02 -0.49 16 27 H 0.24 0.86 8.06 -2.91 -0.02 0.83 16 28 H 0.10 2.11 8.14 -2.39 -0.02 2.10 16 29 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 30 H 0.41 9.03 8.46 -92.70 -0.78 8.25 16 31 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 32 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 33 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 Total: -1.00 -83.81 311.22 2.89 -80.92 By element: Atomic # 1 Polarization: 8.41 SS G_CDS: 0.34 Total: 8.76 kcal Atomic # 6 Polarization: -12.40 SS G_CDS: 5.35 Total: -7.05 kcal Atomic # 7 Polarization: -89.59 SS G_CDS: -3.62 Total: -93.21 kcal Atomic # 8 Polarization: -25.82 SS G_CDS: -0.05 Total: -25.87 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Atomic # 16 Polarization: -8.24 SS G_CDS: -1.16 Total: -9.41 kcal Total: -83.81 2.89 -80.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347847512.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.183 kcal (2) G-P(sol) polarization free energy of solvation -83.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.924 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds