Wall clock time and date at job start Mon Mar 30 2020 01:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99966 * 2 1 4 4 H 1.48504 * 109.47264 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46987 * 299.99857 * 3 2 1 6 6 H 1.48500 * 109.47371 * 59.99426 * 3 2 1 7 7 C 1.37874 * 119.99968 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99928 * 180.02562 * 7 2 1 9 9 C 1.50699 * 120.00116 * 0.02562 * 7 2 1 10 10 O 1.42901 * 113.01720 * 48.33723 * 9 7 2 11 11 C 1.53946 * 113.74034 * 180.02562 * 9 7 2 12 12 N 1.47580 * 86.24073 * 137.89610 * 11 9 7 13 13 C 1.34775 * 134.49629 * 155.42618 * 12 11 9 14 14 O 1.21285 * 119.99928 * 359.97438 * 13 12 11 15 15 C 1.50699 * 120.00193 * 180.02562 * 13 12 11 16 16 H 1.09002 * 109.39701 * 320.17677 * 15 13 12 17 17 C 1.53133 * 109.39897 * 79.99702 * 15 13 12 18 18 C 1.53488 * 108.36246 * 168.11332 * 17 15 13 19 19 O 1.45431 * 108.10719 * 298.26991 * 18 17 15 20 20 C 1.34209 * 117.18567 * 46.44201 * 19 18 17 21 21 O 1.21510 * 118.45763 * 163.17592 * 20 19 18 22 22 N 1.33731 * 123.07887 * 343.20889 * 20 19 18 23 23 C 1.47812 * 90.92375 * 335.45714 * 12 11 9 24 24 H 0.97003 * 119.99565 * 0.02562 * 1 2 3 25 25 H 0.96698 * 113.99808 * 311.65914 * 10 9 7 26 26 H 1.09002 * 113.76900 * 252.25313 * 11 9 7 27 27 H 1.09000 * 113.76969 * 23.53734 * 11 9 7 28 28 H 1.08997 * 109.68395 * 287.83404 * 17 15 13 29 29 H 1.09000 * 109.68335 * 48.39915 * 17 15 13 30 30 H 1.08997 * 109.73306 * 57.92396 * 18 17 15 31 31 H 1.09000 * 109.73186 * 178.61954 * 18 17 15 32 32 H 0.97001 * 118.52108 * 182.30947 * 22 20 19 33 33 H 1.08996 * 113.67199 * 270.23445 * 23 12 11 34 34 H 1.08996 * 113.93703 * 138.88096 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 8 0.2149 -2.5461 -0.9824 11 6 2.1616 -3.7405 0.0018 12 7 1.2226 -4.3082 0.9887 13 6 0.8873 -5.5589 1.3628 14 8 1.4164 -6.5128 0.8325 15 6 -0.1457 -5.7721 2.4391 16 1 -0.0055 -5.0321 3.2271 17 6 -1.5456 -5.6164 1.8384 18 6 -2.5702 -6.1253 2.8618 19 8 -2.3064 -7.5351 3.1027 20 6 -1.0304 -7.8925 3.3154 21 8 -0.8089 -8.9764 3.8180 22 7 0.0085 -7.1114 3.0009 23 6 0.7983 -2.9534 1.4001 24 1 -0.4849 0.8401 -0.0004 25 1 -0.3594 -1.7681 -0.9860 26 1 2.1770 -4.2750 -0.9480 27 1 3.1585 -3.5536 0.4008 28 1 -1.7363 -4.5658 1.6192 29 1 -1.6194 -6.2025 0.9224 30 1 -2.4688 -5.5675 3.7927 31 1 -3.5782 -6.0019 2.4659 32 1 0.9049 -7.4498 3.1524 33 1 1.3941 -2.5358 2.2116 34 1 -0.2745 -2.8576 1.5672 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348288014.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:44 Heat of formation + Delta-G solvation = -147.080692 kcal Electronic energy + Delta-G solvation = -21254.549543 eV Core-core repulsion = 17767.064388 eV Total energy + Delta-G solvation = -3487.485156 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.33215 -41.07384 -39.24966 -38.34448 -36.45285 -35.83203 -34.09498 -32.83224 -30.67083 -28.33413 -27.00104 -26.59447 -25.16453 -22.09816 -21.18304 -20.22122 -19.45335 -19.34965 -18.73303 -18.23650 -17.33312 -17.10357 -16.57205 -16.44232 -16.03002 -15.82674 -15.59180 -15.16811 -14.82633 -14.37111 -14.19309 -13.77946 -13.51519 -13.38923 -13.13560 -12.86948 -12.76947 -12.69283 -12.23180 -12.16501 -11.91865 -11.72120 -11.39883 -11.05329 -10.67469 -10.50249 -10.17447 -9.63024 -8.25618 -6.40882 1.26440 1.38620 1.46935 1.54056 1.59968 1.62722 1.91247 2.39672 2.42912 2.97111 3.12472 3.37236 3.66872 3.75907 3.82263 4.12166 4.20114 4.23916 4.44626 4.57647 4.62698 4.72221 4.80449 4.84211 4.95410 5.00240 5.28353 5.55141 5.76296 5.94892 6.43896 6.64463 6.74995 6.84462 6.99127 7.33037 7.51922 8.80109 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.036277 B = 0.004612 C = 0.004368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.646683 B = 6069.388623 C = 6408.177026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.040 3.960 3 Si 0.961 3.039 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.555 4.555 8 H 0.069 0.931 9 C 0.219 3.781 10 O -0.586 6.586 11 C 0.109 3.891 12 N -0.624 5.624 13 C 0.517 3.483 14 O -0.589 6.589 15 C 0.130 3.870 16 H 0.137 0.863 17 C -0.162 4.162 18 C 0.063 3.937 19 O -0.355 6.355 20 C 0.667 3.333 21 O -0.581 6.581 22 N -0.704 5.704 23 C 0.090 3.910 24 H 0.276 0.724 25 H 0.390 0.610 26 H 0.056 0.944 27 H 0.103 0.897 28 H 0.132 0.868 29 H 0.072 0.928 30 H 0.111 0.889 31 H 0.153 0.847 32 H 0.421 0.579 33 H 0.099 0.901 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.306 -0.776 6.514 7.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.161 4.161 3 Si 0.787 3.213 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.593 4.593 8 H 0.087 0.913 9 C 0.178 3.822 10 O -0.399 6.399 11 C -0.014 4.014 12 N -0.356 5.356 13 C 0.306 3.694 14 O -0.471 6.471 15 C 0.022 3.978 16 H 0.154 0.846 17 C -0.200 4.200 18 C -0.009 4.009 19 O -0.266 6.266 20 C 0.420 3.580 21 O -0.470 6.470 22 N -0.370 5.370 23 C -0.032 4.032 24 H 0.086 0.914 25 H 0.245 0.755 26 H 0.075 0.925 27 H 0.121 0.879 28 H 0.150 0.850 29 H 0.091 0.909 30 H 0.129 0.871 31 H 0.171 0.829 32 H 0.260 0.740 33 H 0.117 0.883 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.362 -2.474 6.374 8.110 hybrid contribution 0.845 1.331 -0.287 1.602 sum -3.517 -1.144 6.087 7.122 Atomic orbital electron populations 1.69343 1.06787 1.28831 1.50321 1.25600 0.95712 1.02092 0.92737 0.85454 0.78987 0.79231 0.77615 1.19554 1.21137 1.20168 1.21747 0.94128 0.90868 1.52568 0.91274 1.20070 0.85579 0.91355 0.85221 1.86053 1.46541 1.48733 1.58572 1.23528 0.94718 0.91832 0.91280 1.50176 1.41349 1.04819 1.39299 1.20715 0.83530 0.81345 0.83849 1.90689 1.57374 1.41305 1.57725 1.21135 0.95504 0.85511 0.95660 0.84559 1.22537 0.91100 1.06713 0.99675 1.23956 1.01469 0.75377 1.00140 1.86676 1.23547 1.31660 1.84691 1.17763 0.80217 0.83270 0.76755 1.90985 1.83170 1.23384 1.49431 1.45108 1.09616 1.16955 1.65297 1.24318 1.01214 0.76455 1.01237 0.91370 0.75484 0.92543 0.87912 0.84974 0.90891 0.87079 0.82948 0.74022 0.88280 0.89607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -40.98 11.08 21.45 0.24 -40.74 16 2 C 0.04 1.76 5.39 84.65 0.46 2.22 16 3 Si 0.96 36.21 29.54 68.60 2.03 38.24 16 4 H -0.27 -10.18 7.11 99.48 0.71 -9.47 16 5 H -0.29 -10.93 7.11 99.48 0.71 -10.23 16 6 H -0.28 -10.16 7.11 99.48 0.71 -9.45 16 7 C -0.56 -24.89 8.62 25.60 0.22 -24.67 16 8 H 0.07 3.07 7.81 -2.91 -0.02 3.05 16 9 C 0.22 9.13 1.45 -10.88 -0.02 9.12 16 10 O -0.59 -26.91 13.50 -148.98 -2.01 -28.92 16 11 C 0.11 4.20 8.22 86.48 0.71 4.91 16 12 N -0.62 -21.66 3.62 -836.75 -3.03 -24.69 16 13 C 0.52 17.44 7.21 87.66 0.63 18.07 16 14 O -0.59 -24.65 17.14 -3.05 -0.05 -24.70 16 15 C 0.13 3.14 3.29 44.37 0.15 3.29 16 16 H 0.14 2.45 8.11 -2.39 -0.02 2.43 16 17 C -0.16 -3.26 5.56 30.80 0.17 -3.09 16 18 C 0.06 0.98 7.20 72.15 0.52 1.50 16 19 O -0.35 -9.25 10.50 -51.15 -0.54 -9.78 16 20 C 0.67 20.60 8.55 129.95 1.11 21.71 16 21 O -0.58 -22.48 17.95 19.93 0.36 -22.12 16 22 N -0.70 -19.15 4.85 -577.04 -2.80 -21.95 16 23 C 0.09 3.02 7.99 86.44 0.69 3.71 16 24 H 0.28 11.81 8.31 -92.71 -0.77 11.04 16 25 H 0.39 18.13 6.42 -74.06 -0.48 17.66 16 26 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.10 3.62 8.09 -2.39 -0.02 3.60 16 28 H 0.13 2.28 7.57 -2.39 -0.02 2.26 16 29 H 0.07 1.81 8.09 -2.39 -0.02 1.79 16 30 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.15 1.45 8.14 -2.39 -0.02 1.44 16 32 H 0.42 11.73 8.52 -92.71 -0.79 10.94 16 33 H 0.10 3.10 8.09 -2.39 -0.02 3.09 16 34 H 0.09 2.64 7.57 -2.39 -0.02 2.62 16 Total: -1.00 -62.45 296.01 -1.27 -63.72 By element: Atomic # 1 Polarization: 34.30 SS G_CDS: -0.11 Total: 34.19 kcal Atomic # 6 Polarization: 32.12 SS G_CDS: 4.64 Total: 36.76 kcal Atomic # 7 Polarization: -81.79 SS G_CDS: -5.59 Total: -87.38 kcal Atomic # 8 Polarization: -83.29 SS G_CDS: -2.24 Total: -85.53 kcal Atomic # 14 Polarization: 36.21 SS G_CDS: 2.03 Total: 38.24 kcal Total: -62.45 -1.27 -63.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348288014.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.359 kcal (2) G-P(sol) polarization free energy of solvation -62.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds