Wall clock time and date at job start Mon Mar 30 2020 01:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00130 * 2 1 4 4 H 1.48507 * 109.46922 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47382 * 300.00519 * 3 2 1 6 6 H 1.48499 * 109.47196 * 60.00735 * 3 2 1 7 7 C 1.37884 * 119.99786 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99870 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99673 * 359.97438 * 7 2 1 10 10 O 1.42896 * 113.28508 * 46.93767 * 9 7 2 11 11 C 1.53500 * 114.20247 * 179.97438 * 9 7 2 12 12 N 1.47067 * 87.97986 * 139.85377 * 11 9 7 13 13 C 1.34779 * 136.05649 * 152.85061 * 12 11 9 14 14 O 1.21288 * 119.99960 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.00166 * 179.97438 * 13 12 11 16 16 H 1.08997 * 109.32338 * 39.76914 * 15 13 12 17 17 C 1.53136 * 109.39582 * 279.99432 * 15 13 12 18 18 C 1.53484 * 108.36349 * 191.88576 * 17 15 13 19 19 O 1.45430 * 108.10425 * 61.73102 * 18 17 15 20 20 C 1.34198 * 117.18882 * 313.55416 * 19 18 17 21 21 O 1.21510 * 118.46364 * 196.79941 * 20 19 18 22 22 N 1.33731 * 123.08074 * 16.80298 * 20 19 18 23 23 C 1.47066 * 87.88692 * 333.10100 * 12 11 9 24 24 H 0.96998 * 119.99874 * 359.97438 * 1 2 3 25 25 H 0.96709 * 113.99904 * 313.06245 * 10 9 7 26 26 H 1.09003 * 113.46338 * 25.07860 * 11 9 7 27 27 H 1.08998 * 113.52299 * 254.64254 * 11 9 7 28 28 H 1.09001 * 109.68701 * 311.60614 * 17 15 13 29 29 H 1.09005 * 109.68227 * 72.12830 * 17 15 13 30 30 H 1.08999 * 109.73233 * 181.38676 * 18 17 15 31 31 H 1.09003 * 109.73239 * 302.07815 * 18 17 15 32 32 H 0.97000 * 118.52882 * 177.73511 * 22 20 19 33 33 H 1.09004 * 113.46298 * 141.67945 * 23 12 11 34 34 H 1.08998 * 113.46761 * 272.11527 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 0.1919 -2.5400 -0.9591 11 6 2.1486 -3.7443 -0.0018 12 7 1.2077 -4.3597 0.9463 13 6 0.8317 -5.6144 1.2640 14 8 1.3264 -6.5600 0.6877 15 6 -0.2035 -5.8423 2.3352 16 1 -0.9858 -5.0884 2.2471 17 6 0.4568 -5.7315 3.7124 18 6 -0.5295 -6.2554 4.7652 19 8 -0.7996 -7.6546 4.4747 20 6 -1.0700 -7.9751 3.1999 21 8 -1.5950 -9.0467 2.9711 22 7 -0.7887 -7.1704 2.1695 23 6 0.8531 -3.0034 1.3907 24 1 -0.4850 0.8400 0.0004 25 1 -0.3718 -1.7541 -0.9562 26 1 3.1374 -3.5669 0.4213 27 1 2.1876 -4.2515 -0.9658 28 1 1.3674 -6.3302 3.7323 29 1 0.6982 -4.6892 3.9210 30 1 -0.0905 -6.1637 5.7586 31 1 -1.4565 -5.6839 4.7176 32 1 -0.9823 -7.4824 1.2717 33 1 -0.2081 -2.8815 1.6080 34 1 1.4933 -2.6268 2.1884 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001348288015.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:46 Heat of formation + Delta-G solvation = -119.245400 kcal Electronic energy + Delta-G solvation = -21179.291407 eV Core-core repulsion = 17693.013280 eV Total energy + Delta-G solvation = -3486.278127 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.19287 -39.73396 -37.84288 -37.16630 -35.26546 -34.21299 -32.33472 -31.80042 -29.31101 -27.07001 -25.37190 -25.13758 -24.10450 -20.70809 -20.16287 -18.78392 -18.40623 -17.69132 -17.53094 -16.81842 -16.11647 -15.53666 -15.15961 -15.03342 -14.84620 -14.58784 -14.33193 -13.99804 -13.31184 -12.96761 -12.82761 -12.40359 -12.28431 -12.04563 -11.73614 -11.69712 -11.19802 -11.16369 -10.86352 -10.61417 -10.58251 -10.41723 -9.97134 -9.53914 -9.19709 -8.91529 -8.59220 -8.10116 -6.54608 -4.65316 2.47475 2.61653 2.82814 3.04189 3.14403 3.16798 3.20242 3.45883 4.06429 4.22883 4.32808 4.63246 4.64529 4.73509 4.89570 5.09307 5.21404 5.39727 5.59232 5.68997 5.79495 5.96628 6.20731 6.26238 6.38193 6.48356 6.72180 6.93041 7.49272 7.53853 7.64742 8.05140 8.19591 8.38561 8.41929 9.06944 9.33337 10.52251 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.035569 B = 0.004502 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.014476 B = 6217.574940 C = 6489.671875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.073 3.927 3 Si 0.909 3.091 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.074 0.926 9 C 0.241 3.759 10 O -0.572 6.572 11 C 0.107 3.893 12 N -0.628 5.628 13 C 0.526 3.474 14 O -0.549 6.549 15 C 0.123 3.877 16 H 0.105 0.895 17 C -0.164 4.164 18 C 0.063 3.937 19 O -0.344 6.344 20 C 0.663 3.337 21 O -0.537 6.537 22 N -0.708 5.708 23 C 0.067 3.933 24 H 0.275 0.725 25 H 0.395 0.605 26 H 0.088 0.912 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.083 0.917 32 H 0.424 0.576 33 H 0.067 0.933 34 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.460 -2.171 8.238 8.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.130 4.130 3 Si 0.736 3.264 4 H -0.194 1.194 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.573 4.573 8 H 0.092 0.908 9 C 0.199 3.801 10 O -0.385 6.385 11 C -0.014 4.014 12 N -0.361 5.361 13 C 0.313 3.687 14 O -0.428 6.428 15 C 0.014 3.986 16 H 0.122 0.878 17 C -0.202 4.202 18 C -0.011 4.011 19 O -0.256 6.256 20 C 0.416 3.584 21 O -0.422 6.422 22 N -0.376 5.376 23 C -0.055 4.055 24 H 0.085 0.915 25 H 0.252 0.748 26 H 0.106 0.894 27 H 0.087 0.913 28 H 0.111 0.889 29 H 0.131 0.869 30 H 0.138 0.862 31 H 0.101 0.899 32 H 0.263 0.737 33 H 0.085 0.915 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.382 -3.931 8.212 9.113 hybrid contribution 0.173 1.669 -0.224 1.693 sum -0.209 -2.262 7.988 8.305 Atomic orbital electron populations 1.69253 1.06240 1.28302 1.50054 1.25078 0.95027 1.00021 0.92838 0.86248 0.80091 0.82062 0.77981 1.19362 1.20545 1.20602 1.21453 0.94008 0.89597 1.52225 0.90774 1.19482 0.85445 0.91100 0.84089 1.86055 1.45108 1.48459 1.58884 1.23412 0.93801 0.91999 0.92238 1.49725 1.41980 1.04426 1.39996 1.19830 0.83476 0.81692 0.83669 1.90708 1.57136 1.40746 1.54165 1.20959 0.96314 0.85968 0.95317 0.87760 1.22498 0.99964 1.05547 0.92217 1.23512 0.99401 0.78199 0.99980 1.86693 1.83974 1.29463 1.25423 1.17725 0.77427 0.83676 0.79575 1.91028 1.46395 1.22814 1.81998 1.45127 1.65157 1.17012 1.10306 1.24289 1.00607 0.77480 1.03160 0.91496 0.74820 0.89372 0.91303 0.88930 0.86919 0.86155 0.89905 0.73655 0.91466 0.89630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -21.04 11.01 55.43 0.61 -20.43 16 2 C 0.07 1.68 5.39 -17.82 -0.10 1.58 16 3 Si 0.91 18.08 29.54 -169.99 -5.02 13.06 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 6 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 7 C -0.53 -12.25 8.70 -34.44 -0.30 -12.55 16 8 H 0.07 1.66 7.81 -52.49 -0.41 1.25 16 9 C 0.24 5.20 1.57 -91.39 -0.14 5.06 16 10 O -0.57 -13.61 13.53 -35.23 -0.48 -14.09 16 11 C 0.11 2.11 8.03 -8.50 -0.07 2.04 16 12 N -0.63 -11.43 3.69 -185.37 -0.68 -12.12 16 13 C 0.53 9.26 7.23 -10.98 -0.08 9.18 16 14 O -0.55 -11.54 17.18 5.55 0.10 -11.45 16 15 C 0.12 1.65 3.36 -69.25 -0.23 1.41 16 16 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 17 C -0.16 -1.68 5.56 -26.41 -0.15 -1.83 16 18 C 0.06 0.56 7.20 37.41 0.27 0.83 16 19 O -0.34 -4.70 10.50 -39.24 -0.41 -5.11 16 20 C 0.66 10.57 8.55 53.59 0.46 11.03 16 21 O -0.54 -10.43 17.95 -19.41 -0.35 -10.78 16 22 N -0.71 -10.33 4.85 -60.48 -0.29 -10.62 16 23 C 0.07 1.22 7.83 -8.64 -0.07 1.15 16 24 H 0.27 6.12 8.31 -40.82 -0.34 5.78 16 25 H 0.40 9.54 6.32 45.56 0.29 9.83 16 26 H 0.09 1.56 8.10 -51.93 -0.42 1.14 16 27 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 28 H 0.09 1.05 8.10 -51.93 -0.42 0.63 16 29 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.12 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.42 6.35 8.52 -40.82 -0.35 6.00 16 33 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 34 H 0.09 1.42 8.10 -51.93 -0.42 1.00 16 LS Contribution 297.12 15.07 4.48 4.48 Total: -1.00 -29.41 297.12 -5.86 -35.27 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: -3.40 Total: 13.88 kcal Atomic # 6 Polarization: 18.31 SS G_CDS: -0.41 Total: 17.91 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: -0.37 Total: -43.17 kcal Atomic # 8 Polarization: -40.28 SS G_CDS: -1.14 Total: -41.42 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.02 Total: 13.06 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -29.41 -5.86 -35.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348288015.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.974 kcal (2) G-P(sol) polarization free energy of solvation -29.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds