Wall clock time and date at job start Mon Mar 30 2020 01:35:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86794 * 120.00130 * 2 1 4 4 H 1.48507 * 109.46922 * 180.02562 * 3 2 1 5 5 H 1.48493 * 109.47382 * 300.00519 * 3 2 1 6 6 H 1.48499 * 109.47196 * 60.00735 * 3 2 1 7 7 C 1.37884 * 119.99786 * 180.02562 * 2 1 3 8 8 H 1.07993 * 119.99870 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99673 * 359.97438 * 7 2 1 10 10 O 1.42896 * 113.28508 * 46.93767 * 9 7 2 11 11 C 1.53500 * 114.20247 * 179.97438 * 9 7 2 12 12 N 1.47067 * 87.97986 * 139.85377 * 11 9 7 13 13 C 1.34779 * 136.05649 * 152.85061 * 12 11 9 14 14 O 1.21288 * 119.99960 * 359.97438 * 13 12 11 15 15 C 1.50701 * 120.00166 * 179.97438 * 13 12 11 16 16 H 1.08997 * 109.32338 * 39.76914 * 15 13 12 17 17 C 1.53136 * 109.39582 * 279.99432 * 15 13 12 18 18 C 1.53484 * 108.36349 * 191.88576 * 17 15 13 19 19 O 1.45430 * 108.10425 * 61.73102 * 18 17 15 20 20 C 1.34198 * 117.18882 * 313.55416 * 19 18 17 21 21 O 1.21510 * 118.46364 * 196.79941 * 20 19 18 22 22 N 1.33731 * 123.08074 * 16.80298 * 20 19 18 23 23 C 1.47066 * 87.88692 * 333.10100 * 12 11 9 24 24 H 0.96998 * 119.99874 * 359.97438 * 1 2 3 25 25 H 0.96709 * 113.99904 * 313.06245 * 10 9 7 26 26 H 1.09003 * 113.46338 * 25.07860 * 11 9 7 27 27 H 1.08998 * 113.52299 * 254.64254 * 11 9 7 28 28 H 1.09001 * 109.68701 * 311.60614 * 17 15 13 29 29 H 1.09005 * 109.68227 * 72.12830 * 17 15 13 30 30 H 1.08999 * 109.73233 * 181.38676 * 18 17 15 31 31 H 1.09003 * 109.73239 * 302.07815 * 18 17 15 32 32 H 0.97000 * 118.52882 * 177.73511 * 22 20 19 33 33 H 1.09004 * 113.46298 * 141.67945 * 23 12 11 34 34 H 1.08998 * 113.46761 * 272.11527 * 23 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 8 0.1919 -2.5400 -0.9591 11 6 2.1486 -3.7443 -0.0018 12 7 1.2077 -4.3597 0.9463 13 6 0.8317 -5.6144 1.2640 14 8 1.3264 -6.5600 0.6877 15 6 -0.2035 -5.8423 2.3352 16 1 -0.9858 -5.0884 2.2471 17 6 0.4568 -5.7315 3.7124 18 6 -0.5295 -6.2554 4.7652 19 8 -0.7996 -7.6546 4.4747 20 6 -1.0700 -7.9751 3.1999 21 8 -1.5950 -9.0467 2.9711 22 7 -0.7887 -7.1704 2.1695 23 6 0.8531 -3.0034 1.3907 24 1 -0.4850 0.8400 0.0004 25 1 -0.3718 -1.7541 -0.9562 26 1 3.1374 -3.5669 0.4213 27 1 2.1876 -4.2515 -0.9658 28 1 1.3674 -6.3302 3.7323 29 1 0.6982 -4.6892 3.9210 30 1 -0.0905 -6.1637 5.7586 31 1 -1.4565 -5.6839 4.7176 32 1 -0.9823 -7.4824 1.2717 33 1 -0.2081 -2.8815 1.6080 34 1 1.4933 -2.6268 2.1884 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001348288015.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:35:46 Heat of formation + Delta-G solvation = -143.527982 kcal Electronic energy + Delta-G solvation = -21180.344378 eV Core-core repulsion = 17693.013280 eV Total energy + Delta-G solvation = -3487.331099 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.34448 -41.18691 -39.33849 -38.34515 -36.45447 -35.91345 -34.10028 -32.84316 -30.74927 -28.35933 -26.90683 -26.57502 -25.17220 -22.21373 -21.16247 -20.25706 -19.50380 -19.30979 -18.74487 -18.22554 -17.34755 -17.10179 -16.64410 -16.37688 -16.07283 -15.82992 -15.56780 -15.28670 -14.72180 -14.52413 -14.18207 -13.78156 -13.51955 -13.39126 -13.14615 -12.78838 -12.76441 -12.72763 -12.21635 -12.12463 -11.93414 -11.72004 -11.39499 -11.05678 -10.69200 -10.48766 -10.19552 -9.64388 -8.26432 -6.42370 1.26505 1.37851 1.47741 1.54890 1.58010 1.63123 1.91694 2.39369 2.43310 2.95755 3.15461 3.35619 3.67940 3.76045 3.80456 4.12109 4.16949 4.24399 4.43213 4.58947 4.64215 4.73532 4.81066 4.85643 4.93323 4.97275 5.26799 5.52663 5.75722 5.93256 6.44166 6.63870 6.77137 6.83251 6.98466 7.31921 7.51474 8.79720 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.035569 B = 0.004502 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.014476 B = 6217.574940 C = 6489.671875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.037 3.963 3 Si 0.965 3.035 4 H -0.268 1.268 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.550 4.550 8 H 0.074 0.926 9 C 0.215 3.785 10 O -0.589 6.589 11 C 0.105 3.895 12 N -0.626 5.626 13 C 0.523 3.477 14 O -0.589 6.589 15 C 0.129 3.871 16 H 0.127 0.873 17 C -0.159 4.159 18 C 0.061 3.939 19 O -0.353 6.353 20 C 0.667 3.333 21 O -0.582 6.582 22 N -0.706 5.706 23 C 0.086 3.914 24 H 0.276 0.724 25 H 0.390 0.610 26 H 0.107 0.893 27 H 0.049 0.951 28 H 0.081 0.919 29 H 0.141 0.859 30 H 0.158 0.842 31 H 0.106 0.894 32 H 0.419 0.581 33 H 0.074 0.926 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.229 -0.886 10.240 10.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.164 4.164 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.588 4.588 8 H 0.092 0.908 9 C 0.174 3.826 10 O -0.402 6.402 11 C -0.017 4.017 12 N -0.359 5.359 13 C 0.313 3.687 14 O -0.470 6.470 15 C 0.020 3.980 16 H 0.144 0.856 17 C -0.197 4.197 18 C -0.012 4.012 19 O -0.265 6.265 20 C 0.421 3.579 21 O -0.471 6.471 22 N -0.372 5.372 23 C -0.036 4.036 24 H 0.086 0.914 25 H 0.246 0.754 26 H 0.125 0.875 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.159 0.841 30 H 0.176 0.824 31 H 0.124 0.876 32 H 0.258 0.742 33 H 0.093 0.907 34 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.139 -2.616 10.246 10.575 hybrid contribution 0.148 1.309 -0.892 1.591 sum 0.009 -1.307 9.354 9.445 Atomic orbital electron populations 1.69304 1.07035 1.28887 1.50442 1.25669 0.95668 1.02375 0.92668 0.85385 0.79029 0.78892 0.77585 1.19213 1.21304 1.20082 1.21671 0.94191 0.90453 1.52450 0.90796 1.19796 0.85558 0.91494 0.85794 1.86043 1.45690 1.48219 1.60248 1.23420 0.94814 0.91303 0.92193 1.49699 1.41654 1.04878 1.39627 1.20574 0.83579 0.80710 0.83886 1.90693 1.58693 1.41811 1.55845 1.21132 0.95670 0.85629 0.95521 0.85560 1.22577 0.99528 1.07257 0.90375 1.23989 1.00419 0.75742 1.01048 1.86675 1.83557 1.32541 1.23690 1.17742 0.76820 0.83086 0.80292 1.90987 1.48467 1.24637 1.82975 1.45150 1.64667 1.17453 1.09923 1.24077 1.01464 0.76635 1.01429 0.91355 0.75378 0.87470 0.93188 0.90064 0.84062 0.82437 0.87594 0.74250 0.90717 0.87452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -42.05 11.01 21.45 0.24 -41.81 16 2 C 0.04 1.65 5.39 84.66 0.46 2.10 16 3 Si 0.97 36.09 29.54 68.60 2.03 38.12 16 4 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.29 -10.99 7.11 99.48 0.71 -10.28 16 6 H -0.28 -10.02 7.11 99.48 0.71 -9.31 16 7 C -0.55 -24.60 8.70 25.60 0.22 -24.38 16 8 H 0.07 3.23 7.81 -2.91 -0.02 3.20 16 9 C 0.21 9.10 1.57 -11.29 -0.02 9.08 16 10 O -0.59 -28.09 13.53 -148.98 -2.02 -30.11 16 11 C 0.11 4.06 8.03 83.18 0.67 4.73 16 12 N -0.63 -21.83 3.69 -859.25 -3.17 -25.00 16 13 C 0.52 17.79 7.23 87.66 0.63 18.42 16 14 O -0.59 -24.79 17.18 -3.06 -0.05 -24.84 16 15 C 0.13 3.14 3.36 44.37 0.15 3.29 16 16 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 17 C -0.16 -2.70 5.56 30.80 0.17 -2.52 16 18 C 0.06 0.82 7.20 72.14 0.52 1.34 16 19 O -0.35 -8.88 10.50 -51.04 -0.54 -9.42 16 20 C 0.67 20.71 8.55 129.95 1.11 21.82 16 21 O -0.58 -22.80 17.95 19.93 0.36 -22.44 16 22 N -0.71 -19.93 4.85 -577.04 -2.80 -22.73 16 23 C 0.09 2.91 7.83 83.09 0.65 3.56 16 24 H 0.28 12.07 8.31 -92.71 -0.77 11.30 16 25 H 0.39 18.95 6.32 -74.05 -0.47 18.48 16 26 H 0.11 3.67 8.10 -2.39 -0.02 3.65 16 27 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.08 1.62 8.10 -2.39 -0.02 1.60 16 29 H 0.14 1.64 8.14 -2.38 -0.02 1.62 16 30 H 0.16 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.42 12.60 8.52 -92.71 -0.79 11.81 16 33 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 34 H 0.11 3.18 8.10 -2.39 -0.02 3.16 16 Total: -1.00 -64.12 297.12 -1.49 -65.61 By element: Atomic # 1 Polarization: 35.28 SS G_CDS: -0.11 Total: 35.18 kcal Atomic # 6 Polarization: 32.88 SS G_CDS: 4.57 Total: 37.44 kcal Atomic # 7 Polarization: -83.81 SS G_CDS: -5.74 Total: -89.55 kcal Atomic # 8 Polarization: -84.56 SS G_CDS: -2.25 Total: -86.81 kcal Atomic # 14 Polarization: 36.09 SS G_CDS: 2.03 Total: 38.12 kcal Total: -64.12 -1.49 -65.61 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001348288015.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.915 kcal (2) G-P(sol) polarization free energy of solvation -64.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds