Wall clock time and date at job start Mon Mar 30 2020 01:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.50707 * 109.47003 * 119.99587 * 2 1 3 13 13 O 1.20829 * 119.99769 * 120.00068 * 12 2 1 14 14 O 1.34227 * 119.99922 * 300.00449 * 12 2 1 15 15 C 1.45207 * 116.99705 * 179.97438 * 14 12 2 16 16 C 1.50697 * 109.46729 * 180.02562 * 15 14 12 17 17 C 1.38260 * 119.95871 * 269.71861 * 16 15 14 18 18 C 1.38218 * 120.06638 * 179.77449 * 17 16 15 19 19 C 1.38417 * 119.99901 * 0.50369 * 18 17 16 20 20 F 1.35099 * 120.03530 * 179.72621 * 19 18 17 21 21 C 1.38653 * 119.92878 * 359.75162 * 19 18 17 22 22 F 1.35095 * 120.03351 * 179.97438 * 21 19 18 23 23 C 1.38210 * 119.96640 * 90.00391 * 16 15 14 24 24 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 26 26 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.46889 * 300.00115 * 15 14 12 29 29 H 1.09005 * 109.46712 * 59.99637 * 15 14 12 30 30 H 1.07996 * 119.97333 * 0.02762 * 17 16 15 31 31 H 1.07994 * 120.00478 * 180.26147 * 18 17 16 32 32 H 1.07993 * 120.00079 * 359.94938 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 6 2.0323 -0.7104 1.2306 13 8 2.7270 -1.6928 1.1198 14 8 1.7080 -0.2517 2.4496 15 6 2.2267 -0.9862 3.5898 16 6 1.7616 -0.3297 4.8640 17 6 2.5295 0.6587 5.4515 18 6 2.1028 1.2657 6.6177 19 6 0.9108 0.8769 7.2042 20 9 0.4958 1.4658 8.3470 21 6 0.1435 -0.1180 6.6178 22 9 -1.0200 -0.4994 7.1886 23 6 0.5710 -0.7202 5.4472 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 1.9028 -0.5285 -4.4375 28 1 1.8625 -2.0131 3.5566 29 1 3.3162 -0.9859 3.5570 30 1 3.4616 0.9597 4.9967 31 1 2.7013 2.0405 7.0734 32 1 -0.0259 -1.4950 4.9893 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350091235.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:02 Heat of formation + Delta-G solvation = -149.930242 kcal Electronic energy + Delta-G solvation = -19718.821082 eV Core-core repulsion = 16087.832094 eV Total energy + Delta-G solvation = -3630.988988 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -49.71824 -48.79287 -40.05772 -39.09716 -35.96583 -34.04456 -32.10647 -31.31628 -31.04264 -26.70492 -25.23642 -23.63423 -23.40356 -21.87323 -19.90403 -18.24592 -17.51551 -17.32148 -17.12284 -16.57449 -16.28475 -15.84887 -15.67909 -15.20281 -14.79736 -14.67228 -14.37151 -14.06003 -13.61876 -13.05855 -12.87010 -12.51013 -12.44340 -12.28108 -11.94595 -11.63750 -11.46568 -11.09554 -10.73636 -10.44377 -10.29989 -9.73256 -9.50249 -9.32798 -9.22310 -8.93651 -8.68571 -6.16591 -4.19752 0.50652 0.68187 2.82049 3.05082 3.19620 3.28116 3.32077 3.44387 3.56017 4.03316 4.20999 4.29170 4.37209 4.66262 4.78251 5.11773 5.14572 5.32682 5.39657 5.50096 5.57456 5.68037 5.76581 6.05769 6.10143 6.26193 6.35588 6.40860 6.64588 6.96878 7.04788 7.42379 8.34226 8.61979 8.98256 9.40010 10.95623 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.033116 B = 0.003849 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.311343 B = 7272.211225 C = 7493.733702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.026 3.974 3 H 0.065 0.935 4 C -0.520 4.520 5 H 0.095 0.905 6 C 0.076 3.924 7 N -0.890 5.890 8 Si 0.883 3.117 9 H -0.275 1.275 10 H -0.264 1.264 11 H -0.293 1.293 12 C 0.474 3.526 13 O -0.500 6.500 14 O -0.362 6.362 15 C 0.101 3.899 16 C -0.066 4.066 17 C -0.076 4.076 18 C -0.128 4.128 19 C 0.070 3.930 20 F -0.129 7.129 21 C 0.065 3.935 22 F -0.128 7.128 23 C -0.102 4.102 24 H 0.057 0.943 25 H 0.044 0.956 26 H 0.052 0.948 27 H 0.267 0.733 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.145 0.855 31 H 0.149 0.851 32 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.025 4.343 20.152 20.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.007 3.993 3 H 0.082 0.918 4 C -0.558 4.558 5 H 0.113 0.887 6 C -0.127 4.127 7 N -0.527 5.527 8 Si 0.712 3.288 9 H -0.202 1.202 10 H -0.189 1.189 11 H -0.220 1.220 12 C 0.317 3.683 13 O -0.385 6.385 14 O -0.281 6.281 15 C 0.027 3.973 16 C -0.067 4.067 17 C -0.095 4.095 18 C -0.146 4.146 19 C 0.050 3.950 20 F -0.108 7.108 21 C 0.045 3.955 22 F -0.107 7.107 23 C -0.121 4.121 24 H 0.077 0.923 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.163 0.837 31 H 0.167 0.833 32 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.854 4.017 20.002 20.485 hybrid contribution -0.863 0.701 0.157 1.123 sum -2.717 4.718 20.159 20.881 Atomic orbital electron populations 1.22099 0.96378 1.01783 1.00110 1.19156 0.93964 0.97686 0.88519 0.91775 1.20909 1.33140 1.14613 0.87104 0.88731 1.24913 0.95606 0.96624 0.95537 1.69864 1.44880 1.40016 0.97981 0.86928 0.80781 0.83642 0.77414 1.20215 1.18936 1.22044 1.24599 0.77048 0.83253 0.83398 1.90562 1.35451 1.26006 1.86454 1.86661 1.70581 1.55810 1.15029 1.21629 0.99432 0.95023 0.81205 1.19539 0.94269 0.97143 0.95735 1.21095 1.00383 0.93967 0.94015 1.21087 0.94838 1.01797 0.96908 1.17747 0.95717 0.95836 0.85674 1.91531 1.90086 1.82444 1.46740 1.17610 0.84575 0.98171 0.95179 1.91537 1.45008 1.90136 1.83999 1.21058 0.96692 1.00877 0.93500 0.92340 0.93660 0.92955 0.92275 0.90155 0.89936 0.83706 0.83349 0.83242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 8.61 37.16 0.32 -2.68 16 2 C 0.03 0.60 2.33 -92.92 -0.22 0.38 16 3 H 0.06 1.43 7.20 -51.93 -0.37 1.05 16 4 C -0.52 -14.50 8.96 -34.44 -0.31 -14.81 16 5 H 0.09 2.97 7.00 -52.49 -0.37 2.61 16 6 C 0.08 2.13 5.45 -17.82 -0.10 2.03 16 7 N -0.89 -26.67 13.96 55.43 0.77 -25.90 16 8 Si 0.88 20.68 24.37 -169.99 -4.14 16.54 16 9 H -0.28 -6.25 6.87 56.52 0.39 -5.86 16 10 H -0.26 -5.79 6.53 56.52 0.37 -5.42 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 C 0.47 10.06 7.25 36.01 0.26 10.32 16 13 O -0.50 -11.90 15.21 -18.75 -0.29 -12.18 16 14 O -0.36 -6.20 10.11 -39.25 -0.40 -6.60 16 15 C 0.10 1.33 5.59 36.00 0.20 1.53 16 16 C -0.07 -0.72 5.52 -104.63 -0.58 -1.30 16 17 C -0.08 -0.70 9.70 -39.58 -0.38 -1.08 16 18 C -0.13 -1.10 10.02 -39.52 -0.40 -1.50 16 19 C 0.07 0.74 7.31 -39.36 -0.29 0.46 16 20 F -0.13 -1.46 17.18 2.25 0.04 -1.42 16 21 C 0.06 0.73 7.31 -39.36 -0.29 0.44 16 22 F -0.13 -1.56 17.18 2.25 0.04 -1.52 16 23 C -0.10 -1.09 9.68 -39.53 -0.38 -1.47 16 24 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 25 H 0.04 0.79 8.11 -51.93 -0.42 0.37 16 26 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 27 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.08 1.02 8.08 -51.93 -0.42 0.60 16 29 H 0.08 1.02 8.08 -51.93 -0.42 0.60 16 30 H 0.15 1.06 8.06 -52.49 -0.42 0.63 16 31 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 32 H 0.15 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 288.59 15.07 4.35 4.35 Total: -1.00 -31.25 288.59 -4.82 -36.08 By element: Atomic # 1 Polarization: 1.39 SS G_CDS: -3.04 Total: -1.66 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -2.16 Total: -7.69 kcal Atomic # 7 Polarization: -26.67 SS G_CDS: 0.77 Total: -25.90 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.68 Total: -18.78 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.08 Total: -2.94 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.14 Total: 16.54 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.25 -4.82 -36.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350091235.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.853 kcal (2) G-P(sol) polarization free energy of solvation -31.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds