Wall clock time and date at job start Mon Mar 30 2020 01:17:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.47057 * 2 1 4 4 C 1.50696 * 109.47712 * 239.99735 * 2 1 3 5 5 H 1.07999 * 120.00319 * 240.00495 * 4 2 1 6 6 C 1.37885 * 119.99717 * 59.99878 * 4 2 1 7 7 N 1.31516 * 119.99913 * 180.02562 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 0.02562 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 C 1.50707 * 109.47003 * 119.99587 * 2 1 3 13 13 O 1.20829 * 119.99769 * 120.00068 * 12 2 1 14 14 O 1.34227 * 119.99922 * 300.00449 * 12 2 1 15 15 C 1.45207 * 116.99705 * 179.97438 * 14 12 2 16 16 C 1.50697 * 109.46729 * 180.02562 * 15 14 12 17 17 C 1.38260 * 119.95871 * 269.71861 * 16 15 14 18 18 C 1.38218 * 120.06638 * 179.77449 * 17 16 15 19 19 C 1.38417 * 119.99901 * 0.50369 * 18 17 16 20 20 F 1.35099 * 120.03530 * 179.72621 * 19 18 17 21 21 C 1.38653 * 119.92878 * 359.75162 * 19 18 17 22 22 F 1.35095 * 120.03351 * 179.97438 * 21 19 18 23 23 C 1.38210 * 119.96640 * 90.00391 * 16 15 14 24 24 H 1.08997 * 109.46749 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47024 * 300.00143 * 1 2 3 26 26 H 1.08998 * 109.46637 * 59.99843 * 1 2 3 27 27 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.46889 * 300.00115 * 15 14 12 29 29 H 1.09005 * 109.46712 * 59.99637 * 15 14 12 30 30 H 1.07996 * 119.97333 * 0.02762 * 17 16 15 31 31 H 1.07994 * 120.00478 * 180.26147 * 18 17 16 32 32 H 1.07993 * 120.00079 * 359.94938 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7104 -1.2303 5 1 2.6533 -1.5885 -1.1312 6 6 1.6994 -0.2394 -2.4827 7 7 2.1375 -0.8596 -3.5565 8 14 0.6260 1.2797 -2.6541 9 1 -0.8019 0.8744 -2.6994 10 1 0.8491 2.1773 -1.4922 11 1 0.9774 1.9953 -3.9070 12 6 2.0323 -0.7104 1.2306 13 8 2.7270 -1.6928 1.1198 14 8 1.7080 -0.2517 2.4496 15 6 2.2267 -0.9862 3.5898 16 6 1.7616 -0.3297 4.8640 17 6 2.5295 0.6587 5.4515 18 6 2.1028 1.2657 6.6177 19 6 0.9108 0.8769 7.2042 20 9 0.4958 1.4658 8.3470 21 6 0.1435 -0.1180 6.6178 22 9 -1.0200 -0.4994 7.1886 23 6 0.5710 -0.7202 5.4472 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5139 -0.8900 27 1 1.9028 -0.5285 -4.4375 28 1 1.8625 -2.0131 3.5566 29 1 3.3162 -0.9859 3.5570 30 1 3.4616 0.9597 4.9967 31 1 2.7013 2.0405 7.0734 32 1 -0.0259 -1.4950 4.9893 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350091235.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:01 Heat of formation + Delta-G solvation = -168.439472 kcal Electronic energy + Delta-G solvation = -19719.623703 eV Core-core repulsion = 16087.832094 eV Total energy + Delta-G solvation = -3631.791609 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -50.56866 -49.65079 -41.49607 -40.06882 -37.46801 -35.94357 -33.52606 -32.79941 -31.85433 -27.77492 -27.15757 -25.11643 -24.32337 -22.81165 -21.56214 -19.11219 -18.95668 -18.39273 -18.21403 -18.08766 -17.41853 -17.37526 -17.07091 -16.31293 -16.06895 -15.59403 -15.37525 -15.11888 -14.98910 -14.57430 -14.18121 -14.06147 -13.68949 -13.46767 -13.25943 -12.88883 -12.78319 -12.58854 -12.33076 -12.20242 -11.66934 -11.49708 -11.26622 -11.09638 -10.76312 -10.16375 -9.81784 -8.30287 -6.40426 -0.32835 -0.07234 1.34708 1.41150 1.41982 1.52898 1.72983 2.33147 2.44649 2.68767 3.03350 3.20139 3.38688 3.53336 3.88807 3.98583 4.12529 4.19328 4.38765 4.40509 4.56984 4.66740 4.70676 4.78796 4.82111 4.94894 4.99166 5.25719 5.34984 5.39852 5.49315 5.63580 6.22553 6.72167 6.98754 7.24855 8.86353 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.033116 B = 0.003849 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 845.311343 B = 7272.211225 C = 7493.733702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.018 3.982 3 H 0.081 0.919 4 C -0.532 4.532 5 H 0.039 0.961 6 C 0.017 3.983 7 N -0.945 5.945 8 Si 0.952 3.048 9 H -0.260 1.260 10 H -0.232 1.232 11 H -0.297 1.297 12 C 0.482 3.518 13 O -0.537 6.537 14 O -0.352 6.352 15 C 0.097 3.903 16 C -0.076 4.076 17 C -0.068 4.068 18 C -0.115 4.115 19 C 0.064 3.936 20 F -0.135 7.135 21 C 0.048 3.952 22 F -0.138 7.138 23 C -0.103 4.103 24 H 0.051 0.949 25 H 0.083 0.917 26 H 0.050 0.950 27 H 0.270 0.730 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.168 0.832 31 H 0.179 0.821 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.840 6.763 21.894 23.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.001 4.001 3 H 0.099 0.901 4 C -0.570 4.570 5 H 0.057 0.943 6 C -0.181 4.181 7 N -0.584 5.584 8 Si 0.777 3.223 9 H -0.185 1.185 10 H -0.155 1.155 11 H -0.224 1.224 12 C 0.327 3.673 13 O -0.425 6.425 14 O -0.269 6.269 15 C 0.024 3.976 16 C -0.076 4.076 17 C -0.086 4.086 18 C -0.134 4.134 19 C 0.044 3.956 20 F -0.114 7.114 21 C 0.028 3.972 22 F -0.117 7.117 23 C -0.121 4.121 24 H 0.070 0.930 25 H 0.101 0.899 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.100 0.900 29 H 0.110 0.890 30 H 0.185 0.815 31 H 0.197 0.803 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.681 6.446 21.798 22.889 hybrid contribution -0.521 -0.130 -0.269 0.600 sum -3.201 6.316 21.528 22.663 Atomic orbital electron populations 1.22014 0.93914 1.02078 1.01807 1.19087 0.95867 0.97748 0.87410 0.90123 1.21037 1.32592 1.13436 0.89893 0.94266 1.25895 0.97096 1.00426 0.94714 1.70039 1.47030 1.42527 0.98821 0.85809 0.79008 0.79244 0.78255 1.18523 1.15479 1.22431 1.24165 0.76277 0.82399 0.84472 1.90558 1.37130 1.27595 1.87249 1.86589 1.70102 1.55690 1.14554 1.21907 1.00118 0.95124 0.80449 1.19385 0.94955 0.98316 0.94984 1.21370 1.00698 0.92704 0.93780 1.21375 0.93997 1.01751 0.96236 1.18006 0.96322 0.95717 0.85568 1.91518 1.90259 1.82507 1.47122 1.17761 0.84693 0.99018 0.95720 1.91508 1.45638 1.90359 1.84203 1.21113 0.96743 1.00920 0.93359 0.92953 0.89851 0.93136 0.92096 0.90009 0.88955 0.81452 0.80331 0.82664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.36 8.61 71.98 0.62 -4.74 16 2 C 0.02 0.81 2.33 -12.28 -0.03 0.78 16 3 H 0.08 3.35 7.20 -2.38 -0.02 3.33 16 4 C -0.53 -30.34 8.96 25.60 0.23 -30.12 16 5 H 0.04 2.61 7.00 -2.91 -0.02 2.59 16 6 C 0.02 0.93 5.45 84.66 0.46 1.40 16 7 N -0.95 -58.43 13.96 21.45 0.30 -58.13 16 8 Si 0.95 41.49 24.37 68.60 1.67 43.16 16 9 H -0.26 -10.62 6.87 99.48 0.68 -9.94 16 10 H -0.23 -8.83 6.53 99.48 0.65 -8.18 16 11 H -0.30 -13.03 7.11 99.48 0.71 -12.32 16 12 C 0.48 20.07 7.25 71.24 0.52 20.59 16 13 O -0.54 -26.04 15.21 21.95 0.33 -25.71 16 14 O -0.35 -11.25 10.11 -51.39 -0.52 -11.77 16 15 C 0.10 2.37 5.59 71.24 0.40 2.77 16 16 C -0.08 -1.46 5.52 -19.87 -0.11 -1.57 16 17 C -0.07 -0.99 9.70 22.27 0.22 -0.78 16 18 C -0.12 -1.58 10.02 22.31 0.22 -1.35 16 19 C 0.06 1.20 7.31 22.41 0.16 1.37 16 20 F -0.14 -2.80 17.18 44.97 0.77 -2.03 16 21 C 0.05 1.00 7.31 22.41 0.16 1.17 16 22 F -0.14 -3.24 17.18 44.97 0.77 -2.47 16 23 C -0.10 -2.00 9.68 22.30 0.22 -1.79 16 24 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 25 H 0.08 2.53 8.11 -2.39 -0.02 2.51 16 26 H 0.05 1.94 3.27 -2.39 -0.01 1.93 16 27 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 28 H 0.08 1.99 8.08 -2.39 -0.02 1.97 16 29 H 0.09 2.10 8.08 -2.38 -0.02 2.08 16 30 H 0.17 1.72 8.06 -2.91 -0.02 1.70 16 31 H 0.18 1.35 8.06 -2.91 -0.02 1.33 16 32 H 0.16 2.74 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -70.28 288.59 7.48 -62.81 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: 1.08 Total: 6.40 kcal Atomic # 6 Polarization: -15.34 SS G_CDS: 3.07 Total: -12.27 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: 0.30 Total: -58.13 kcal Atomic # 8 Polarization: -37.29 SS G_CDS: -0.19 Total: -37.48 kcal Atomic # 9 Polarization: -6.05 SS G_CDS: 1.55 Total: -4.50 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 1.67 Total: 43.16 kcal Total: -70.28 7.48 -62.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350091235.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.633 kcal (2) G-P(sol) polarization free energy of solvation -70.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds