Wall clock time and date at job start Mon Mar 30 2020 01:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47190 * 2 1 4 4 C 1.50705 * 109.47275 * 120.00056 * 2 1 3 5 5 H 1.08007 * 119.99704 * 120.00165 * 4 2 1 6 6 C 1.37871 * 120.00037 * 300.00225 * 4 2 1 7 7 N 1.31522 * 119.99658 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 120.00253 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.47088 * 89.99947 * 8 6 4 10 10 H 1.48497 * 109.47263 * 210.00158 * 8 6 4 11 11 H 1.48496 * 109.46860 * 330.00093 * 8 6 4 12 12 C 1.50697 * 109.47066 * 240.00278 * 2 1 3 13 13 O 1.20826 * 120.00035 * 239.99595 * 12 2 1 14 14 O 1.34228 * 120.00210 * 60.00060 * 12 2 1 15 15 C 1.45199 * 117.00268 * 179.97438 * 14 12 2 16 16 C 1.50706 * 109.47098 * 179.97438 * 15 14 12 17 17 C 1.38256 * 119.96725 * 269.72717 * 16 15 14 18 18 C 1.38212 * 120.06750 * 179.76639 * 17 16 15 19 19 C 1.38410 * 120.00232 * 0.51239 * 18 17 16 20 20 F 1.35096 * 120.03544 * 179.72519 * 19 18 17 21 21 C 1.38651 * 119.92846 * 359.73977 * 19 18 17 22 22 F 1.35104 * 120.03343 * 180.02562 * 21 19 18 23 23 C 1.38214 * 119.95957 * 90.00021 * 16 15 14 24 24 H 1.09002 * 109.47328 * 59.99315 * 1 2 3 25 25 H 1.09001 * 109.47190 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46848 * 299.99743 * 1 2 3 27 27 H 0.97003 * 119.99590 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.46741 * 60.00477 * 15 14 12 29 29 H 1.09000 * 109.47116 * 299.99782 * 15 14 12 30 30 H 1.08000 * 119.96415 * 0.02562 * 17 16 15 31 31 H 1.08003 * 119.99848 * 180.24904 * 18 17 16 32 32 H 1.08002 * 120.00291 * 359.96315 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1382 -0.8592 3.5565 8 14 0.6258 1.2797 2.6542 9 1 -0.8020 0.8743 2.6994 10 1 0.9772 1.9952 3.9072 11 1 0.8491 2.1772 1.4924 12 6 2.0323 -0.7103 -1.2305 13 8 2.7270 -1.6927 -1.1197 14 8 1.7080 -0.2517 -2.4496 15 6 2.2276 -0.9855 -3.5897 16 6 1.7626 -0.3290 -4.8640 17 6 0.5748 -0.7243 -5.4509 18 6 0.1439 -0.1202 -6.6170 19 6 0.9069 0.8742 -7.2041 20 9 0.4891 1.4612 -8.3469 21 6 2.1006 1.2670 -6.6183 22 9 2.8468 2.2378 -7.1894 23 6 2.5268 0.6638 -5.4477 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9035 -0.5281 4.4375 28 1 1.8641 -2.0126 -3.5570 29 1 3.3171 -0.9844 -3.5566 30 1 -0.0190 -1.5030 -4.9955 31 1 -0.7861 -0.4271 -7.0723 32 1 3.4563 0.9691 -4.9903 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350091238.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:04 Heat of formation + Delta-G solvation = -149.924552 kcal Electronic energy + Delta-G solvation = -19711.016266 eV Core-core repulsion = 16080.027524 eV Total energy + Delta-G solvation = -3630.988741 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.71724 -48.79174 -40.05848 -39.09782 -35.96662 -34.04579 -32.10659 -31.31345 -31.04528 -26.70523 -25.23800 -23.62562 -23.41440 -21.87177 -19.90453 -18.24602 -17.51926 -17.32219 -17.10355 -16.57569 -16.30103 -15.96947 -15.49833 -15.20222 -14.83453 -14.70454 -14.37895 -14.08877 -13.52053 -13.11196 -12.88625 -12.53556 -12.39035 -12.27150 -11.98844 -11.60820 -11.47272 -11.10111 -10.73742 -10.44235 -10.30124 -9.73348 -9.50248 -9.32831 -9.22351 -8.93678 -8.68584 -6.16570 -4.19775 0.50670 0.68197 2.82057 3.05082 3.19382 3.28299 3.32155 3.44457 3.55968 4.03287 4.20956 4.29165 4.37227 4.66275 4.78243 5.11754 5.14599 5.32661 5.39659 5.50078 5.57530 5.68003 5.76433 6.05775 6.09879 6.25819 6.35133 6.40855 6.64419 6.96819 7.04544 7.42332 8.34231 8.61967 8.98184 9.40034 10.95640 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.032954 B = 0.003828 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.475269 B = 7313.694086 C = 7487.683907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.026 3.974 3 H 0.065 0.935 4 C -0.520 4.520 5 H 0.095 0.905 6 C 0.076 3.924 7 N -0.890 5.890 8 Si 0.883 3.117 9 H -0.275 1.275 10 H -0.293 1.293 11 H -0.264 1.264 12 C 0.474 3.526 13 O -0.500 6.500 14 O -0.362 6.362 15 C 0.101 3.899 16 C -0.066 4.066 17 C -0.076 4.076 18 C -0.128 4.128 19 C 0.071 3.929 20 F -0.129 7.129 21 C 0.065 3.935 22 F -0.128 7.128 23 C -0.103 4.103 24 H 0.044 0.956 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.267 0.733 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.145 0.855 31 H 0.149 0.851 32 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.030 2.925 -20.153 20.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.006 3.994 3 H 0.082 0.918 4 C -0.558 4.558 5 H 0.113 0.887 6 C -0.127 4.127 7 N -0.528 5.528 8 Si 0.712 3.288 9 H -0.202 1.202 10 H -0.220 1.220 11 H -0.189 1.189 12 C 0.317 3.683 13 O -0.385 6.385 14 O -0.281 6.281 15 C 0.027 3.973 16 C -0.067 4.067 17 C -0.094 4.094 18 C -0.146 4.146 19 C 0.050 3.950 20 F -0.108 7.108 21 C 0.045 3.955 22 F -0.107 7.107 23 C -0.121 4.121 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.163 0.837 31 H 0.166 0.834 32 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -3.776 2.658 -20.003 20.529 hybrid contribution -0.441 0.999 -0.156 1.103 sum -4.217 3.657 -20.159 20.917 Atomic orbital electron populations 1.22097 0.96361 1.01765 1.00109 1.19156 0.93985 0.97694 0.88525 0.91785 1.20908 1.33130 1.14610 0.87103 0.88731 1.24911 0.95618 0.96615 0.95538 1.69868 1.44859 1.40045 0.97979 0.86927 0.80759 0.83651 0.77431 1.20210 1.22042 1.18939 1.24594 0.77058 0.83242 0.83395 1.90561 1.35431 1.26027 1.86453 1.86659 1.70522 1.55875 1.15029 1.21628 0.99435 0.95018 0.81204 1.19542 0.94960 0.96452 0.95735 1.21090 0.94931 0.99408 0.94019 1.21084 1.00746 0.95899 0.96904 1.17744 0.94363 0.97183 0.85677 1.91530 1.89758 1.82767 1.46745 1.17613 0.90924 0.91823 0.95178 1.91540 1.75221 1.59925 1.83995 1.21064 1.01835 0.95745 0.93492 0.93650 0.92332 0.92971 0.92277 0.89954 0.90141 0.83714 0.83350 0.83233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 8.61 37.16 0.32 -2.65 16 2 C 0.03 0.59 2.33 -92.92 -0.22 0.38 16 3 H 0.06 1.43 7.20 -51.93 -0.37 1.06 16 4 C -0.52 -14.50 8.95 -34.44 -0.31 -14.81 16 5 H 0.09 2.97 7.00 -52.48 -0.37 2.61 16 6 C 0.08 2.13 5.45 -17.82 -0.10 2.03 16 7 N -0.89 -26.67 13.96 55.43 0.77 -25.90 16 8 Si 0.88 20.68 24.37 -169.99 -4.14 16.54 16 9 H -0.28 -6.22 6.87 56.52 0.39 -5.83 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.26 -5.81 6.53 56.52 0.37 -5.44 16 12 C 0.47 10.06 7.25 36.00 0.26 10.32 16 13 O -0.50 -11.90 15.21 -18.75 -0.29 -12.18 16 14 O -0.36 -6.20 10.11 -39.25 -0.40 -6.60 16 15 C 0.10 1.33 5.59 36.01 0.20 1.53 16 16 C -0.07 -0.72 5.52 -104.62 -0.58 -1.30 16 17 C -0.08 -0.70 9.69 -39.58 -0.38 -1.08 16 18 C -0.13 -1.10 10.02 -39.53 -0.40 -1.50 16 19 C 0.07 0.74 7.31 -39.37 -0.29 0.46 16 20 F -0.13 -1.46 17.18 2.25 0.04 -1.42 16 21 C 0.06 0.73 7.31 -39.36 -0.29 0.44 16 22 F -0.13 -1.56 17.18 2.25 0.04 -1.52 16 23 C -0.10 -1.09 9.68 -39.53 -0.38 -1.48 16 24 H 0.04 0.78 8.11 -51.93 -0.42 0.36 16 25 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 26 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 27 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.08 1.02 8.07 -51.93 -0.42 0.60 16 29 H 0.08 1.02 8.08 -51.93 -0.42 0.60 16 30 H 0.15 1.06 8.06 -52.49 -0.42 0.63 16 31 H 0.15 0.90 8.06 -52.48 -0.42 0.48 16 32 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 288.59 15.07 4.35 4.35 Total: -1.00 -31.26 288.59 -4.82 -36.08 By element: Atomic # 1 Polarization: 1.36 SS G_CDS: -3.04 Total: -1.69 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -2.16 Total: -7.66 kcal Atomic # 7 Polarization: -26.67 SS G_CDS: 0.77 Total: -25.90 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.68 Total: -18.78 kcal Atomic # 9 Polarization: -3.02 SS G_CDS: 0.08 Total: -2.94 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -4.14 Total: 16.54 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.26 -4.82 -36.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350091238.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.841 kcal (2) G-P(sol) polarization free energy of solvation -31.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds