Wall clock time and date at job start Mon Mar 30 2020 01:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47190 * 2 1 4 4 C 1.50705 * 109.47275 * 120.00056 * 2 1 3 5 5 H 1.08007 * 119.99704 * 120.00165 * 4 2 1 6 6 C 1.37871 * 120.00037 * 300.00225 * 4 2 1 7 7 N 1.31522 * 119.99658 * 180.02562 * 6 4 2 8 8 Si 1.86802 * 120.00253 * 359.97438 * 6 4 2 9 9 H 1.48498 * 109.47088 * 89.99947 * 8 6 4 10 10 H 1.48497 * 109.47263 * 210.00158 * 8 6 4 11 11 H 1.48496 * 109.46860 * 330.00093 * 8 6 4 12 12 C 1.50697 * 109.47066 * 240.00278 * 2 1 3 13 13 O 1.20826 * 120.00035 * 239.99595 * 12 2 1 14 14 O 1.34228 * 120.00210 * 60.00060 * 12 2 1 15 15 C 1.45199 * 117.00268 * 179.97438 * 14 12 2 16 16 C 1.50706 * 109.47098 * 179.97438 * 15 14 12 17 17 C 1.38256 * 119.96725 * 269.72717 * 16 15 14 18 18 C 1.38212 * 120.06750 * 179.76639 * 17 16 15 19 19 C 1.38410 * 120.00232 * 0.51239 * 18 17 16 20 20 F 1.35096 * 120.03544 * 179.72519 * 19 18 17 21 21 C 1.38651 * 119.92846 * 359.73977 * 19 18 17 22 22 F 1.35104 * 120.03343 * 180.02562 * 21 19 18 23 23 C 1.38214 * 119.95957 * 90.00021 * 16 15 14 24 24 H 1.09002 * 109.47328 * 59.99315 * 1 2 3 25 25 H 1.09001 * 109.47190 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46848 * 299.99743 * 1 2 3 27 27 H 0.97003 * 119.99590 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.46741 * 60.00477 * 15 14 12 29 29 H 1.09000 * 109.47116 * 299.99782 * 15 14 12 30 30 H 1.08000 * 119.96415 * 0.02562 * 17 16 15 31 31 H 1.08003 * 119.99848 * 180.24904 * 18 17 16 32 32 H 1.08002 * 120.00291 * 359.96315 * 23 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 2.1382 -0.8592 3.5565 8 14 0.6258 1.2797 2.6542 9 1 -0.8020 0.8743 2.6994 10 1 0.9772 1.9952 3.9072 11 1 0.8491 2.1772 1.4924 12 6 2.0323 -0.7103 -1.2305 13 8 2.7270 -1.6927 -1.1197 14 8 1.7080 -0.2517 -2.4496 15 6 2.2276 -0.9855 -3.5897 16 6 1.7626 -0.3290 -4.8640 17 6 0.5748 -0.7243 -5.4509 18 6 0.1439 -0.1202 -6.6170 19 6 0.9069 0.8742 -7.2041 20 9 0.4891 1.4612 -8.3469 21 6 2.1006 1.2670 -6.6183 22 9 2.8468 2.2378 -7.1894 23 6 2.5268 0.6638 -5.4477 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.9035 -0.5281 4.4375 28 1 1.8641 -2.0126 -3.5570 29 1 3.3171 -0.9844 -3.5566 30 1 -0.0190 -1.5030 -4.9955 31 1 -0.7861 -0.4271 -7.0723 32 1 3.4563 0.9691 -4.9903 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350091238.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:17:04 Heat of formation + Delta-G solvation = -168.464227 kcal Electronic energy + Delta-G solvation = -19711.820206 eV Core-core repulsion = 16080.027524 eV Total energy + Delta-G solvation = -3631.792682 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 270.085 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -50.56883 -49.65108 -41.49700 -40.06907 -37.46854 -35.94111 -33.52425 -32.79691 -31.85528 -27.77502 -27.14890 -25.11195 -24.32652 -22.80999 -21.56223 -19.10701 -18.96956 -18.35819 -18.22495 -18.08879 -17.49654 -17.38588 -16.97762 -16.30694 -16.06996 -15.61101 -15.45597 -15.06711 -14.98741 -14.40187 -14.33615 -14.09460 -13.62366 -13.44920 -13.29588 -12.89250 -12.76292 -12.58442 -12.34422 -12.18611 -11.67029 -11.50047 -11.26287 -11.09402 -10.76045 -10.16411 -9.81788 -8.30320 -6.40479 -0.32784 -0.07260 1.34419 1.41081 1.42278 1.52848 1.72948 2.33112 2.44699 2.68753 3.03342 3.20064 3.38649 3.53437 3.88998 3.98406 4.12538 4.19450 4.39475 4.40841 4.58233 4.66802 4.70654 4.80016 4.82101 4.95034 5.00471 5.25760 5.35762 5.40732 5.49459 5.63626 6.22524 6.72049 6.98739 7.24861 8.86325 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.032954 B = 0.003828 C = 0.003739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.475269 B = 7313.694086 C = 7487.683907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.017 3.983 3 H 0.078 0.922 4 C -0.532 4.532 5 H 0.039 0.961 6 C 0.016 3.984 7 N -0.945 5.945 8 Si 0.953 3.047 9 H -0.257 1.257 10 H -0.298 1.298 11 H -0.234 1.234 12 C 0.482 3.518 13 O -0.537 6.537 14 O -0.352 6.352 15 C 0.097 3.903 16 C -0.076 4.076 17 C -0.067 4.067 18 C -0.115 4.115 19 C 0.064 3.936 20 F -0.135 7.135 21 C 0.048 3.952 22 F -0.139 7.139 23 C -0.104 4.104 24 H 0.084 0.916 25 H 0.054 0.946 26 H 0.049 0.951 27 H 0.270 0.730 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.169 0.831 31 H 0.180 0.820 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.348 4.284 -21.900 23.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.002 4.002 3 H 0.095 0.905 4 C -0.569 4.569 5 H 0.057 0.943 6 C -0.181 4.181 7 N -0.584 5.584 8 Si 0.777 3.223 9 H -0.182 1.182 10 H -0.225 1.225 11 H -0.157 1.157 12 C 0.327 3.673 13 O -0.425 6.425 14 O -0.269 6.269 15 C 0.024 3.976 16 C -0.076 4.076 17 C -0.085 4.085 18 C -0.133 4.133 19 C 0.044 3.956 20 F -0.114 7.114 21 C 0.028 3.972 22 F -0.117 7.117 23 C -0.122 4.122 24 H 0.103 0.897 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.111 0.889 29 H 0.099 0.901 30 H 0.186 0.814 31 H 0.197 0.803 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -6.104 4.026 -21.804 22.998 hybrid contribution 0.352 0.485 0.272 0.657 sum -5.753 4.511 -21.533 22.740 Atomic orbital electron populations 1.22006 0.93620 1.02235 1.01838 1.19090 0.96130 0.97572 0.87417 0.90459 1.21038 1.32585 1.13426 0.89899 0.94271 1.25892 0.97126 1.00402 0.94714 1.70043 1.47016 1.42554 0.98817 0.85805 0.79159 0.79190 0.78131 1.18214 1.22532 1.15725 1.24160 0.76289 0.82384 0.84467 1.90557 1.37084 1.27646 1.87249 1.86587 1.69985 1.55814 1.14552 1.21906 0.99727 0.95513 0.80450 1.19389 0.96133 0.97138 0.94981 1.21369 0.94061 0.99273 0.93761 1.21378 1.01271 0.94455 0.96223 1.18004 0.94404 0.97620 0.85571 1.91517 1.89771 1.82990 1.47127 1.17768 0.91493 0.92255 0.95726 1.91510 1.75597 1.60429 1.84202 1.21118 1.02113 0.95619 0.93378 0.89696 0.92680 0.93229 0.92100 0.88900 0.90069 0.81373 0.80287 0.82743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.22 8.61 71.98 0.62 -4.60 16 2 C 0.02 0.77 2.33 -12.29 -0.03 0.74 16 3 H 0.08 3.26 7.20 -2.39 -0.02 3.24 16 4 C -0.53 -30.36 8.95 25.60 0.23 -30.13 16 5 H 0.04 2.61 7.00 -2.91 -0.02 2.59 16 6 C 0.02 0.93 5.45 84.65 0.46 1.39 16 7 N -0.95 -58.45 13.96 21.45 0.30 -58.16 16 8 Si 0.95 41.54 24.37 68.60 1.67 43.21 16 9 H -0.26 -10.39 6.87 99.48 0.68 -9.71 16 10 H -0.30 -13.12 7.11 99.48 0.71 -12.41 16 11 H -0.23 -9.01 6.53 99.48 0.65 -8.36 16 12 C 0.48 20.09 7.25 71.23 0.52 20.61 16 13 O -0.54 -26.06 15.21 21.96 0.33 -25.72 16 14 O -0.35 -11.25 10.11 -51.39 -0.52 -11.77 16 15 C 0.10 2.38 5.59 71.24 0.40 2.77 16 16 C -0.08 -1.46 5.52 -19.86 -0.11 -1.57 16 17 C -0.07 -0.97 9.69 22.27 0.22 -0.75 16 18 C -0.11 -1.56 10.02 22.30 0.22 -1.33 16 19 C 0.06 1.21 7.31 22.41 0.16 1.37 16 20 F -0.14 -2.80 17.18 44.97 0.77 -2.03 16 21 C 0.05 1.00 7.31 22.41 0.16 1.16 16 22 F -0.14 -3.27 17.18 44.97 0.77 -2.50 16 23 C -0.10 -2.04 9.68 22.31 0.22 -1.82 16 24 H 0.08 2.50 8.11 -2.39 -0.02 2.48 16 25 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.05 1.88 3.27 -2.39 -0.01 1.87 16 27 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 28 H 0.09 2.10 8.07 -2.39 -0.02 2.08 16 29 H 0.08 1.98 8.08 -2.39 -0.02 1.97 16 30 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 31 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 32 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 Total: -1.00 -70.44 288.59 7.48 -62.96 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: 1.08 Total: 6.17 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: 3.07 Total: -12.17 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: 0.30 Total: -58.16 kcal Atomic # 8 Polarization: -37.31 SS G_CDS: -0.19 Total: -37.49 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 1.55 Total: -4.53 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 1.67 Total: 43.21 kcal Total: -70.44 7.48 -62.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350091238.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.501 kcal (2) G-P(sol) polarization free energy of solvation -70.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds