Wall clock time and date at job start Mon Mar 30 2020 01:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86798 * 119.99466 * 2 1 4 4 H 1.48497 * 109.47673 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47084 * 239.99736 * 3 2 1 6 6 H 1.48501 * 109.46846 * 119.99897 * 3 2 1 7 7 C 1.40045 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00222 * 4.67054 * 7 2 1 9 9 C 1.46373 * 119.99626 * 184.67774 * 7 2 1 10 10 O 1.21687 * 120.00293 * 6.23890 * 9 7 2 11 11 N 1.34780 * 119.99746 * 186.24684 * 9 7 2 12 12 C 1.46505 * 119.99680 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.46585 * 179.97438 * 12 11 9 14 14 C 1.53629 * 111.58675 * 174.72436 * 13 12 11 15 15 O 1.48408 * 102.75528 * 247.87727 * 14 13 12 16 16 C 1.34104 * 109.69213 * 356.42308 * 15 14 13 17 17 O 1.21508 * 123.28659 * 176.39667 * 16 15 14 18 18 N 1.33168 * 113.42992 * 356.41640 * 16 15 14 19 19 C 1.47015 * 129.13790 * 191.64641 * 18 16 15 20 20 C 1.53760 * 106.80738 * 129.68777 * 19 18 16 21 21 O 1.42794 * 109.72987 * 48.81177 * 20 19 18 22 22 C 1.43173 * 115.38939 * 296.86706 * 21 20 19 23 23 H 0.97000 * 120.00092 * 174.89925 * 1 2 3 24 24 H 0.97002 * 119.99928 * 359.97438 * 11 9 7 25 25 H 1.08998 * 109.47209 * 299.99569 * 12 11 9 26 26 H 1.08996 * 109.46993 * 60.00223 * 12 11 9 27 27 H 1.08999 * 110.53365 * 6.39353 * 14 13 12 28 28 H 1.08999 * 110.52851 * 129.15682 * 14 13 12 29 29 H 1.09009 * 109.98442 * 10.36254 * 19 18 16 30 30 H 1.08998 * 109.98385 * 249.01485 * 19 18 16 31 31 H 1.09006 * 109.43113 * 288.73286 * 20 19 18 32 32 H 1.09004 * 109.43099 * 168.89301 * 20 19 18 33 33 H 1.09001 * 109.67482 * 304.64076 * 22 21 20 34 34 H 1.09001 * 109.70945 * 184.12708 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 1.2756 2.7465 0.0006 5 1 3.0944 1.6965 -1.2125 6 1 3.0943 1.6965 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 1.4697 -2.1465 -0.0771 9 6 3.4671 -1.2149 0.1028 10 8 4.0644 -0.1738 0.3031 11 7 4.1499 -2.3700 -0.0240 12 6 5.6114 -2.3719 0.0789 13 6 6.1331 -3.7990 -0.0998 14 6 7.6686 -3.8398 -0.1307 15 8 7.9579 -4.2310 -1.5328 16 6 6.8086 -4.4670 -2.1823 17 8 6.7553 -4.7431 -3.3644 18 7 5.7315 -4.3689 -1.4055 19 6 4.3461 -4.7742 -1.6845 20 6 3.8821 -5.6236 -0.4898 21 8 4.1902 -4.9485 0.7302 22 6 5.5841 -4.7376 0.9801 23 1 -0.4850 -0.8367 -0.0747 24 1 3.6738 -3.1999 -0.1834 25 1 6.0311 -1.7314 -0.6967 26 1 5.9071 -1.9975 1.0589 27 1 8.0817 -2.8564 0.0939 28 1 8.0454 -4.5833 0.5716 29 1 4.3081 -5.3657 -2.5993 30 1 3.7128 -3.8926 -1.7832 31 1 4.3921 -6.5868 -0.5098 32 1 2.8057 -5.7827 -0.5542 33 1 6.1122 -5.6904 0.9412 34 1 5.7171 -4.2843 1.9624 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352062134.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:35 Heat of formation + Delta-G solvation = -144.875743 kcal Electronic energy + Delta-G solvation = -22088.568296 eV Core-core repulsion = 18601.178754 eV Total energy + Delta-G solvation = -3487.389542 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.09387 -39.04398 -37.66277 -37.22361 -35.15221 -33.65418 -32.86565 -32.18717 -29.15021 -27.13191 -26.53281 -24.96208 -23.79056 -21.87334 -20.49687 -19.85366 -18.14969 -17.70459 -17.01966 -16.93434 -16.31348 -15.70502 -15.37553 -15.19687 -15.14072 -14.73984 -14.13608 -13.84260 -13.80143 -13.49623 -13.11504 -12.79787 -12.50281 -12.20558 -11.99767 -11.97060 -11.63699 -11.10728 -10.92698 -10.62715 -10.48734 -10.36633 -10.21399 -9.23213 -8.99051 -8.91284 -7.98560 -7.97028 -7.00958 -4.94618 2.20003 2.62866 3.08824 3.32954 3.57120 3.67756 3.82271 4.04050 4.09333 4.26330 4.33402 4.47641 4.51348 4.74020 4.76529 4.80893 4.93403 4.98744 5.17858 5.23102 5.39654 5.41174 5.53836 5.66837 5.86999 5.94330 6.22082 6.78932 7.17045 7.47636 7.61974 7.72790 7.92006 8.07952 8.81805 9.03358 10.02172 10.31890 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.025288 B = 0.006329 C = 0.005946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.972417 B = 4422.962818 C = 4707.903882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.060 3.940 3 Si 1.131 2.869 4 H -0.323 1.323 5 H -0.292 1.292 6 H -0.281 1.281 7 C -0.595 4.595 8 H 0.069 0.931 9 C 0.551 3.449 10 O -0.621 6.621 11 N -0.751 5.751 12 C 0.137 3.863 13 C 0.066 3.934 14 C 0.061 3.939 15 O -0.334 6.334 16 C 0.652 3.348 17 O -0.524 6.524 18 N -0.619 5.619 19 C 0.102 3.898 20 C 0.041 3.959 21 O -0.363 6.363 22 C 0.069 3.931 23 H 0.277 0.723 24 H 0.395 0.605 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.120 0.880 28 H 0.112 0.888 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.060 0.940 32 H 0.117 0.883 33 H 0.063 0.937 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.945 -12.842 2.520 17.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.460 5.460 2 C -0.157 4.157 3 Si 0.964 3.036 4 H -0.254 1.254 5 H -0.220 1.220 6 H -0.208 1.208 7 C -0.632 4.632 8 H 0.088 0.912 9 C 0.360 3.640 10 O -0.514 6.514 11 N -0.409 5.409 12 C 0.011 3.989 13 C -0.021 4.021 14 C -0.014 4.014 15 O -0.245 6.245 16 C 0.406 3.594 17 O -0.410 6.410 18 N -0.368 5.368 19 C -0.019 4.019 20 C -0.036 4.036 21 O -0.280 6.280 22 C -0.009 4.009 23 H 0.088 0.912 24 H 0.233 0.767 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.138 0.862 28 H 0.130 0.870 29 H 0.123 0.877 30 H 0.115 0.885 31 H 0.078 0.922 32 H 0.135 0.865 33 H 0.081 0.919 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 11.160 -10.755 2.102 15.641 hybrid contribution 0.045 -2.380 -0.271 2.396 sum 11.205 -13.136 1.831 17.363 Atomic orbital electron populations 1.70658 1.07582 1.31981 1.35770 1.27149 0.95328 1.04963 0.88271 0.82366 0.71399 0.70806 0.79048 1.25435 1.21981 1.20831 1.22002 0.89797 0.96266 1.55112 0.91233 1.18477 0.88741 0.81237 0.75587 1.90143 1.70679 1.31423 1.59164 1.46039 1.03744 1.11741 1.79398 1.21178 0.85373 0.90376 1.01996 1.23067 0.95174 0.97376 0.86441 1.24574 0.92157 1.04203 0.80473 1.87744 1.29251 1.82168 1.25305 1.18099 0.79347 0.76690 0.85243 1.91038 1.84926 1.53813 1.11177 1.48146 1.08960 1.64662 1.14996 1.22564 0.78774 1.00793 0.99730 1.23218 1.02596 0.94270 0.83539 1.87978 1.23053 1.77914 1.39010 1.23057 0.82842 0.97100 0.97904 0.91210 0.76663 0.92045 0.90820 0.86204 0.87003 0.87670 0.88505 0.92222 0.86465 0.91863 0.86685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.86 13.64 55.55 0.76 -23.11 16 2 C 0.06 1.73 5.52 -17.37 -0.10 1.64 16 3 Si 1.13 29.90 25.99 -169.99 -4.42 25.48 16 4 H -0.32 -8.22 7.11 56.52 0.40 -7.82 16 5 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 6 H -0.28 -7.61 6.78 56.52 0.38 -7.23 16 7 C -0.60 -16.58 9.96 -35.63 -0.36 -16.94 16 8 H 0.07 1.90 8.05 -52.49 -0.42 1.48 16 9 C 0.55 14.36 7.57 -12.99 -0.10 14.26 16 10 O -0.62 -17.53 12.07 5.20 0.06 -17.46 16 11 N -0.75 -15.25 4.63 -61.72 -0.29 -15.54 16 12 C 0.14 2.22 4.86 -4.04 -0.02 2.20 16 13 C 0.07 0.78 0.91 -130.53 -0.12 0.66 16 14 C 0.06 0.55 7.69 37.48 0.29 0.84 16 15 O -0.33 -4.54 11.20 -38.67 -0.43 -4.98 16 16 C 0.65 10.36 8.90 53.34 0.47 10.84 16 17 O -0.52 -10.15 17.75 -19.08 -0.34 -10.49 16 18 N -0.62 -8.53 2.76 -162.77 -0.45 -8.98 16 19 C 0.10 1.29 6.30 -3.37 -0.02 1.27 16 20 C 0.04 0.43 6.71 37.55 0.25 0.68 16 21 O -0.36 -4.57 8.65 -35.23 -0.30 -4.87 16 22 C 0.07 0.69 5.68 37.29 0.21 0.90 16 23 H 0.28 7.61 8.72 -40.82 -0.36 7.25 16 24 H 0.39 7.32 3.44 -40.82 -0.14 7.18 16 25 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 26 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 27 H 0.12 0.88 7.78 -51.93 -0.40 0.48 16 28 H 0.11 0.61 7.64 -51.93 -0.40 0.21 16 29 H 0.11 1.21 7.99 -51.92 -0.41 0.79 16 30 H 0.10 1.44 6.37 -51.93 -0.33 1.11 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.06 0.49 7.96 -51.93 -0.41 0.08 16 34 H 0.12 1.00 8.14 -51.93 -0.42 0.57 16 LS Contribution 280.44 15.07 4.23 4.23 Total: -1.00 -36.10 280.44 -4.47 -40.57 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -3.81 Total: -1.20 kcal Atomic # 6 Polarization: 15.83 SS G_CDS: 0.52 Total: 16.34 kcal Atomic # 7 Polarization: -47.65 SS G_CDS: 0.02 Total: -47.62 kcal Atomic # 8 Polarization: -36.79 SS G_CDS: -1.01 Total: -37.80 kcal Atomic # 14 Polarization: 29.90 SS G_CDS: -4.42 Total: 25.48 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -36.10 -4.47 -40.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352062134.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.306 kcal (2) G-P(sol) polarization free energy of solvation -36.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds