Wall clock time and date at job start Mon Mar 30 2020 01:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30678 * 1 3 3 Si 1.86798 * 119.99466 * 2 1 4 4 H 1.48497 * 109.47673 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47084 * 239.99736 * 3 2 1 6 6 H 1.48501 * 109.46846 * 119.99897 * 3 2 1 7 7 C 1.40045 * 119.99940 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00222 * 4.67054 * 7 2 1 9 9 C 1.46373 * 119.99626 * 184.67774 * 7 2 1 10 10 O 1.21687 * 120.00293 * 6.23890 * 9 7 2 11 11 N 1.34780 * 119.99746 * 186.24684 * 9 7 2 12 12 C 1.46505 * 119.99680 * 179.97438 * 11 9 7 13 13 C 1.52998 * 109.46585 * 179.97438 * 12 11 9 14 14 C 1.53629 * 111.58675 * 174.72436 * 13 12 11 15 15 O 1.48408 * 102.75528 * 247.87727 * 14 13 12 16 16 C 1.34104 * 109.69213 * 356.42308 * 15 14 13 17 17 O 1.21508 * 123.28659 * 176.39667 * 16 15 14 18 18 N 1.33168 * 113.42992 * 356.41640 * 16 15 14 19 19 C 1.47015 * 129.13790 * 191.64641 * 18 16 15 20 20 C 1.53760 * 106.80738 * 129.68777 * 19 18 16 21 21 O 1.42794 * 109.72987 * 48.81177 * 20 19 18 22 22 C 1.43173 * 115.38939 * 296.86706 * 21 20 19 23 23 H 0.97000 * 120.00092 * 174.89925 * 1 2 3 24 24 H 0.97002 * 119.99928 * 359.97438 * 11 9 7 25 25 H 1.08998 * 109.47209 * 299.99569 * 12 11 9 26 26 H 1.08996 * 109.46993 * 60.00223 * 12 11 9 27 27 H 1.08999 * 110.53365 * 6.39353 * 14 13 12 28 28 H 1.08999 * 110.52851 * 129.15682 * 14 13 12 29 29 H 1.09009 * 109.98442 * 10.36254 * 19 18 16 30 30 H 1.08998 * 109.98385 * 249.01485 * 19 18 16 31 31 H 1.09006 * 109.43113 * 288.73286 * 20 19 18 32 32 H 1.09004 * 109.43099 * 168.89301 * 20 19 18 33 33 H 1.09001 * 109.67482 * 304.64076 * 22 21 20 34 34 H 1.09001 * 109.70945 * 184.12708 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 1.2756 2.7465 0.0006 5 1 3.0944 1.6965 -1.2125 6 1 3.0943 1.6965 1.2125 7 6 2.0070 -1.2128 -0.0005 8 1 1.4697 -2.1465 -0.0771 9 6 3.4671 -1.2149 0.1028 10 8 4.0644 -0.1738 0.3031 11 7 4.1499 -2.3700 -0.0240 12 6 5.6114 -2.3719 0.0789 13 6 6.1331 -3.7990 -0.0998 14 6 7.6686 -3.8398 -0.1307 15 8 7.9579 -4.2310 -1.5328 16 6 6.8086 -4.4670 -2.1823 17 8 6.7553 -4.7431 -3.3644 18 7 5.7315 -4.3689 -1.4055 19 6 4.3461 -4.7742 -1.6845 20 6 3.8821 -5.6236 -0.4898 21 8 4.1902 -4.9485 0.7302 22 6 5.5841 -4.7376 0.9801 23 1 -0.4850 -0.8367 -0.0747 24 1 3.6738 -3.1999 -0.1834 25 1 6.0311 -1.7314 -0.6967 26 1 5.9071 -1.9975 1.0589 27 1 8.0817 -2.8564 0.0939 28 1 8.0454 -4.5833 0.5716 29 1 4.3081 -5.3657 -2.5993 30 1 3.7128 -3.8926 -1.7832 31 1 4.3921 -6.5868 -0.5098 32 1 2.8057 -5.7827 -0.5542 33 1 6.1122 -5.6904 0.9412 34 1 5.7171 -4.2843 1.9624 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352062134.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:35 Heat of formation + Delta-G solvation = -174.139467 kcal Electronic energy + Delta-G solvation = -22089.837266 eV Core-core repulsion = 18601.178754 eV Total energy + Delta-G solvation = -3488.658512 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -43.14240 -40.27155 -39.38587 -38.42327 -36.29528 -35.20028 -34.86650 -33.47408 -30.18678 -28.89147 -27.35803 -26.51360 -24.79197 -22.95849 -21.79478 -21.58726 -20.08286 -18.73499 -18.28735 -17.94957 -17.35796 -17.02805 -16.93823 -16.47957 -16.23708 -15.95714 -15.73367 -15.37050 -15.05886 -14.76985 -14.51855 -14.47678 -13.99517 -13.77937 -13.25982 -13.19971 -12.60004 -12.51198 -12.36899 -12.13552 -11.89924 -11.69326 -11.41087 -11.33549 -11.19299 -10.14057 -9.94160 -9.74843 -9.19757 -7.13129 1.15173 1.43074 1.44552 1.54257 1.95989 2.18119 2.20642 2.37962 2.50739 2.81886 3.12525 3.29136 3.31311 3.42506 3.51923 3.84490 3.98180 4.24722 4.29616 4.36948 4.44525 4.51601 4.58364 4.61239 4.69272 4.74972 5.16387 5.44729 5.52820 5.88815 5.96467 6.00481 6.10200 6.64469 6.74498 7.15430 7.99024 8.12104 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.025288 B = 0.006329 C = 0.005946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.972417 B = 4422.962818 C = 4707.903882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.029 3.971 3 Si 1.162 2.838 4 H -0.308 1.308 5 H -0.301 1.301 6 H -0.291 1.291 7 C -0.614 4.614 8 H 0.065 0.935 9 C 0.548 3.452 10 O -0.644 6.644 11 N -0.738 5.738 12 C 0.131 3.869 13 C 0.069 3.931 14 C 0.065 3.935 15 O -0.344 6.344 16 C 0.650 3.350 17 O -0.571 6.571 18 N -0.618 5.618 19 C 0.097 3.903 20 C 0.047 3.953 21 O -0.389 6.389 22 C 0.067 3.933 23 H 0.278 0.722 24 H 0.404 0.596 25 H 0.041 0.959 26 H 0.089 0.911 27 H 0.138 0.862 28 H 0.162 0.838 29 H 0.112 0.888 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.128 0.872 33 H 0.098 0.902 34 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.457 -14.213 3.915 19.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.186 4.186 3 Si 0.994 3.006 4 H -0.239 1.239 5 H -0.229 1.229 6 H -0.219 1.219 7 C -0.650 4.650 8 H 0.084 0.916 9 C 0.354 3.646 10 O -0.539 6.539 11 N -0.395 5.395 12 C 0.005 3.995 13 C -0.017 4.017 14 C -0.009 4.009 15 O -0.254 6.254 16 C 0.404 3.596 17 O -0.460 6.460 18 N -0.365 5.365 19 C -0.024 4.024 20 C -0.030 4.030 21 O -0.306 6.306 22 C -0.010 4.010 23 H 0.089 0.911 24 H 0.245 0.755 25 H 0.059 0.941 26 H 0.107 0.893 27 H 0.156 0.844 28 H 0.179 0.821 29 H 0.130 0.870 30 H 0.085 0.915 31 H 0.104 0.896 32 H 0.146 0.854 33 H 0.116 0.884 34 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 12.672 -12.159 3.528 17.913 hybrid contribution -0.364 -1.985 -0.680 2.130 sum 12.309 -14.145 2.848 18.965 Atomic orbital electron populations 1.70660 1.07776 1.32158 1.37037 1.27768 0.95727 1.06718 0.88346 0.81931 0.70694 0.69968 0.78002 1.23892 1.22883 1.21936 1.22188 0.91266 0.96014 1.55582 0.91640 1.18347 0.88533 0.82385 0.75323 1.90118 1.71076 1.32687 1.60025 1.45819 1.05843 1.10442 1.77386 1.21429 0.82409 0.93545 1.02110 1.23158 0.97255 0.94934 0.86374 1.25058 0.89777 1.07087 0.78964 1.87718 1.28275 1.81881 1.27501 1.18219 0.80151 0.76268 0.84915 1.90993 1.85783 1.55933 1.13243 1.48262 1.08848 1.63957 1.15462 1.22647 0.77991 1.00130 1.01638 1.23297 1.03619 0.94422 0.81637 1.87939 1.24795 1.78269 1.39593 1.23328 0.81864 0.98224 0.97577 0.91146 0.75533 0.94097 0.89325 0.84399 0.82057 0.86998 0.91454 0.89628 0.85379 0.88385 0.84954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.72 13.64 21.84 0.30 -48.42 16 2 C 0.03 1.66 5.52 85.30 0.47 2.13 16 3 Si 1.16 60.85 25.99 68.60 1.78 62.63 16 4 H -0.31 -15.20 7.11 99.48 0.71 -14.50 16 5 H -0.30 -15.99 7.11 99.48 0.71 -15.29 16 6 H -0.29 -15.64 6.78 99.48 0.67 -14.97 16 7 C -0.61 -34.39 9.96 24.83 0.25 -34.14 16 8 H 0.07 3.62 8.05 -2.91 -0.02 3.60 16 9 C 0.55 28.46 7.57 86.36 0.65 29.11 16 10 O -0.64 -36.17 12.07 -4.31 -0.05 -36.23 16 11 N -0.74 -29.34 4.63 -467.41 -2.16 -31.50 16 12 C 0.13 3.99 4.86 86.38 0.42 4.41 16 13 C 0.07 1.42 0.91 3.61 0.00 1.43 16 14 C 0.06 0.90 7.69 72.19 0.55 1.45 16 15 O -0.34 -8.51 11.20 -50.46 -0.56 -9.07 16 16 C 0.65 19.90 8.90 130.04 1.16 21.06 16 17 O -0.57 -22.18 17.75 19.62 0.35 -21.83 16 18 N -0.62 -15.98 2.76 -901.32 -2.49 -18.46 16 19 C 0.10 2.35 6.30 86.54 0.54 2.89 16 20 C 0.05 0.87 6.71 72.24 0.48 1.35 16 21 O -0.39 -8.63 8.65 -148.98 -1.29 -9.92 16 22 C 0.07 1.05 5.68 72.07 0.41 1.46 16 23 H 0.28 15.37 8.72 -92.71 -0.81 14.56 16 24 H 0.40 14.65 3.44 -92.71 -0.32 14.33 16 25 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 27 H 0.14 1.46 7.78 -2.39 -0.02 1.44 16 28 H 0.16 0.73 7.64 -2.39 -0.02 0.71 16 29 H 0.11 2.53 7.99 -2.38 -0.02 2.51 16 30 H 0.07 2.03 6.37 -2.39 -0.02 2.02 16 31 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 32 H 0.13 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.10 0.94 7.96 -2.39 -0.02 0.92 16 34 H 0.13 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -79.22 280.44 1.57 -77.65 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: 0.75 Total: 4.00 kcal Atomic # 6 Polarization: 26.21 SS G_CDS: 4.95 Total: 31.15 kcal Atomic # 7 Polarization: -94.04 SS G_CDS: -4.35 Total: -98.39 kcal Atomic # 8 Polarization: -75.49 SS G_CDS: -1.56 Total: -77.05 kcal Atomic # 14 Polarization: 60.85 SS G_CDS: 1.78 Total: 62.63 kcal Total: -79.22 1.57 -77.65 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352062134.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.488 kcal (2) G-P(sol) polarization free energy of solvation -79.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds