Wall clock time and date at job start Mon Mar 30 2020 01:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30665 * 1 3 3 Si 1.86798 * 120.00268 * 2 1 4 4 H 1.48497 * 109.47049 * 274.97904 * 3 2 1 5 5 H 1.48493 * 109.47347 * 34.98437 * 3 2 1 6 6 H 1.48507 * 109.46873 * 154.98220 * 3 2 1 7 7 C 1.40049 * 119.99661 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99951 * 186.14838 * 7 2 1 9 9 C 1.46376 * 119.99866 * 6.15651 * 7 2 1 10 10 O 1.21681 * 120.00105 * 353.93270 * 9 7 2 11 11 N 1.34780 * 120.00011 * 173.93922 * 9 7 2 12 12 C 1.46499 * 120.00187 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.46957 * 179.97438 * 12 11 9 14 14 C 1.53618 * 111.59341 * 305.27172 * 13 12 11 15 15 O 1.48083 * 102.90974 * 113.55782 * 14 13 12 16 16 C 1.34098 * 109.70584 * 2.07673 * 15 14 13 17 17 O 1.21514 * 123.28066 * 184.61331 * 16 15 14 18 18 N 1.33156 * 113.43525 * 4.58722 * 16 15 14 19 19 C 1.47026 * 129.09955 * 167.32590 * 18 16 15 20 20 C 1.53768 * 106.79757 * 231.50197 * 19 18 16 21 21 O 1.42779 * 109.75678 * 311.19012 * 20 19 18 22 22 C 1.43187 * 115.39711 * 63.07630 * 21 20 19 23 23 H 0.97005 * 120.00193 * 0.02562 * 1 2 3 24 24 H 0.97001 * 119.99916 * 359.97438 * 11 9 7 25 25 H 1.09002 * 109.47212 * 59.99995 * 12 11 9 26 26 H 1.08997 * 109.47094 * 299.99775 * 12 11 9 27 27 H 1.08998 * 110.53072 * 231.87074 * 14 13 12 28 28 H 1.09001 * 110.53049 * 354.63514 * 14 13 12 29 29 H 1.08997 * 109.98581 * 350.81936 * 19 18 16 30 30 H 1.09003 * 109.98541 * 112.08792 * 19 18 16 31 31 H 1.09001 * 109.43351 * 71.25121 * 20 19 18 32 32 H 1.09002 * 109.42761 * 191.15495 * 20 19 18 33 33 H 1.09002 * 109.67429 * 175.94084 * 22 21 20 34 34 H 1.08999 * 109.67583 * 55.43995 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3830 2.1071 -1.3948 5 1 1.4949 2.6199 0.8027 6 1 3.5870 1.4119 0.5921 7 6 2.0068 -1.2129 0.0005 8 1 3.0822 -1.2156 0.1007 9 6 1.2812 -2.4769 -0.1348 10 8 0.0644 -2.4827 -0.1368 11 7 1.9608 -3.6344 -0.2572 12 6 1.2346 -4.8995 -0.3921 13 6 2.2346 -6.0510 -0.5143 14 6 3.2288 -5.8171 -1.6617 15 8 4.5179 -5.6472 -0.9530 16 6 4.3330 -5.8044 0.3658 17 8 5.2127 -5.6367 1.1872 18 7 3.0913 -6.1616 0.6876 19 6 2.5735 -6.6643 1.9686 20 6 1.8025 -7.9582 1.6593 21 8 0.9050 -7.7369 0.5711 22 6 1.5229 -7.3987 -0.6755 23 1 -0.4851 0.8401 -0.0004 24 1 2.9308 -3.6297 -0.2559 25 1 0.6089 -4.8660 -1.2841 26 1 0.6075 -5.0539 0.4859 27 1 3.2619 -6.6839 -2.3216 28 1 2.9632 -4.9198 -2.2207 29 1 3.3998 -6.8762 2.6471 30 1 1.9048 -5.9281 2.4148 31 1 2.5076 -8.7456 1.3926 32 1 1.2358 -8.2618 2.5395 33 1 0.7627 -7.3216 -1.4529 34 1 2.2478 -8.1664 -0.9460 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001352062135.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:38 Heat of formation + Delta-G solvation = -136.238957 kcal Electronic energy + Delta-G solvation = -21819.727780 eV Core-core repulsion = 18332.712758 eV Total energy + Delta-G solvation = -3487.015023 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.94779 -38.69612 -37.47965 -36.91205 -34.99617 -33.58384 -32.50831 -31.59273 -29.06726 -27.03949 -26.45558 -25.00694 -23.78135 -21.65057 -20.25273 -19.76852 -17.86736 -17.40214 -16.78079 -16.50757 -16.16464 -15.67825 -15.44375 -15.24792 -14.96279 -14.31560 -14.03310 -13.98639 -13.55289 -13.28961 -13.15876 -12.50360 -12.34223 -12.08885 -11.63015 -11.49278 -11.15315 -11.02119 -10.86301 -10.73292 -10.55736 -10.48957 -10.35497 -10.23601 -8.88204 -8.83270 -7.70331 -7.66878 -6.24155 -4.68049 2.34813 2.77858 3.13175 3.20771 3.25045 3.26903 3.43326 3.99142 4.07724 4.21431 4.34644 4.53549 4.57348 4.80366 4.85034 4.99836 5.07593 5.14292 5.24005 5.38862 5.41427 5.58320 5.68301 5.73995 6.10383 6.24520 6.37386 6.80619 7.33021 7.40980 7.77287 7.96207 8.07255 8.27147 8.99108 9.39335 10.53004 10.71063 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.024569 B = 0.005834 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.362533 B = 4798.556693 C = 5262.626852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.767 5.767 2 C 0.089 3.911 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.545 4.545 8 H 0.067 0.933 9 C 0.557 3.443 10 O -0.579 6.579 11 N -0.768 5.768 12 C 0.141 3.859 13 C 0.070 3.930 14 C 0.054 3.946 15 O -0.333 6.333 16 C 0.652 3.348 17 O -0.524 6.524 18 N -0.620 5.620 19 C 0.113 3.887 20 C 0.048 3.952 21 O -0.370 6.370 22 C 0.070 3.930 23 H 0.269 0.731 24 H 0.377 0.623 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.108 0.892 28 H 0.123 0.877 29 H 0.102 0.898 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.612 -15.761 -1.876 16.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.395 5.395 2 C -0.131 4.131 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.361 3.639 10 O -0.461 6.461 11 N -0.425 5.425 12 C 0.015 3.985 13 C -0.016 4.016 14 C -0.020 4.020 15 O -0.243 6.243 16 C 0.406 3.594 17 O -0.409 6.409 18 N -0.368 5.368 19 C -0.008 4.008 20 C -0.030 4.030 21 O -0.288 6.288 22 C -0.008 4.008 23 H 0.079 0.921 24 H 0.209 0.791 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.126 0.874 28 H 0.141 0.859 29 H 0.120 0.880 30 H 0.106 0.894 31 H 0.074 0.926 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.019 -15.535 -1.504 15.897 hybrid contribution 1.093 0.842 -0.015 1.380 sum 4.112 -14.693 -1.519 15.333 Atomic orbital electron populations 1.70020 1.07077 1.27371 1.35082 1.25691 0.94604 1.00320 0.92500 0.86352 0.80348 0.81341 0.78742 1.19713 1.20389 1.18809 1.20883 0.94176 0.89514 1.53582 0.91440 1.18198 0.87089 0.82144 0.76452 1.90605 1.13931 1.86286 1.55312 1.46216 1.08432 1.05436 1.82424 1.20999 0.92432 0.82514 1.02527 1.23077 0.93525 0.99247 0.85778 1.24644 0.78170 1.05575 0.93652 1.87700 1.32889 1.85463 1.18267 1.18118 0.82789 0.76479 0.82051 1.91035 1.46109 1.56005 1.47777 1.48105 1.08337 1.68221 1.12163 1.22323 0.99312 0.96059 0.83079 1.23127 0.93506 0.95388 0.90966 1.87926 1.33288 1.89583 1.17958 1.23013 0.98302 0.91987 0.87529 0.92053 0.79114 0.91196 0.91443 0.87439 0.85936 0.87988 0.89371 0.92575 0.86992 0.86621 0.91803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -22.90 11.85 55.55 0.66 -22.24 16 2 C 0.09 2.49 5.49 -17.37 -0.10 2.39 16 3 Si 0.91 20.41 29.56 -169.99 -5.03 15.38 16 4 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 5 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 6 H -0.26 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.54 -15.57 9.54 -35.63 -0.34 -15.91 16 8 H 0.07 1.83 7.85 -52.49 -0.41 1.41 16 9 C 0.56 15.64 7.74 -12.99 -0.10 15.54 16 10 O -0.58 -18.33 15.04 5.21 0.08 -18.26 16 11 N -0.77 -16.80 5.00 -61.72 -0.31 -17.11 16 12 C 0.14 2.46 4.83 -4.04 -0.02 2.44 16 13 C 0.07 0.90 0.72 -130.54 -0.09 0.80 16 14 C 0.05 0.62 6.94 37.48 0.26 0.88 16 15 O -0.33 -5.14 11.08 -38.65 -0.43 -5.57 16 16 C 0.65 11.13 8.01 53.34 0.43 11.56 16 17 O -0.52 -10.72 17.75 -19.09 -0.34 -11.06 16 18 N -0.62 -8.88 2.67 -162.77 -0.43 -9.32 16 19 C 0.11 1.35 7.12 -3.36 -0.02 1.33 16 20 C 0.05 0.44 7.00 37.56 0.26 0.71 16 21 O -0.37 -4.20 10.52 -35.23 -0.37 -4.57 16 22 C 0.07 0.68 5.71 37.29 0.21 0.89 16 23 H 0.27 7.26 8.29 -40.82 -0.34 6.93 16 24 H 0.38 7.95 6.86 -40.82 -0.28 7.67 16 25 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.07 1.31 8.10 -51.93 -0.42 0.89 16 27 H 0.11 0.79 7.64 -51.93 -0.40 0.39 16 28 H 0.12 1.45 7.47 -51.93 -0.39 1.06 16 29 H 0.10 1.13 7.98 -51.93 -0.41 0.72 16 30 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.12 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.06 0.50 7.97 -51.93 -0.41 0.09 16 LS Contribution 290.77 15.07 4.38 4.38 Total: -1.00 -37.57 290.77 -5.27 -42.84 By element: Atomic # 1 Polarization: 8.86 SS G_CDS: -3.97 Total: 4.89 kcal Atomic # 6 Polarization: 20.14 SS G_CDS: 0.49 Total: 20.63 kcal Atomic # 7 Polarization: -48.58 SS G_CDS: -0.08 Total: -48.67 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -1.06 Total: -39.46 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.38 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -37.57 -5.27 -42.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352062135.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.402 kcal (2) G-P(sol) polarization free energy of solvation -37.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds