Wall clock time and date at job start Mon Mar 30 2020 01:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30665 * 1 3 3 Si 1.86798 * 120.00268 * 2 1 4 4 H 1.48497 * 109.47049 * 274.97904 * 3 2 1 5 5 H 1.48493 * 109.47347 * 34.98437 * 3 2 1 6 6 H 1.48507 * 109.46873 * 154.98220 * 3 2 1 7 7 C 1.40049 * 119.99661 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99951 * 186.14838 * 7 2 1 9 9 C 1.46376 * 119.99866 * 6.15651 * 7 2 1 10 10 O 1.21681 * 120.00105 * 353.93270 * 9 7 2 11 11 N 1.34780 * 120.00011 * 173.93922 * 9 7 2 12 12 C 1.46499 * 120.00187 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.46957 * 179.97438 * 12 11 9 14 14 C 1.53618 * 111.59341 * 305.27172 * 13 12 11 15 15 O 1.48083 * 102.90974 * 113.55782 * 14 13 12 16 16 C 1.34098 * 109.70584 * 2.07673 * 15 14 13 17 17 O 1.21514 * 123.28066 * 184.61331 * 16 15 14 18 18 N 1.33156 * 113.43525 * 4.58722 * 16 15 14 19 19 C 1.47026 * 129.09955 * 167.32590 * 18 16 15 20 20 C 1.53768 * 106.79757 * 231.50197 * 19 18 16 21 21 O 1.42779 * 109.75678 * 311.19012 * 20 19 18 22 22 C 1.43187 * 115.39711 * 63.07630 * 21 20 19 23 23 H 0.97005 * 120.00193 * 0.02562 * 1 2 3 24 24 H 0.97001 * 119.99916 * 359.97438 * 11 9 7 25 25 H 1.09002 * 109.47212 * 59.99995 * 12 11 9 26 26 H 1.08997 * 109.47094 * 299.99775 * 12 11 9 27 27 H 1.08998 * 110.53072 * 231.87074 * 14 13 12 28 28 H 1.09001 * 110.53049 * 354.63514 * 14 13 12 29 29 H 1.08997 * 109.98581 * 350.81936 * 19 18 16 30 30 H 1.09003 * 109.98541 * 112.08792 * 19 18 16 31 31 H 1.09001 * 109.43351 * 71.25121 * 20 19 18 32 32 H 1.09002 * 109.42761 * 191.15495 * 20 19 18 33 33 H 1.09002 * 109.67429 * 175.94084 * 22 21 20 34 34 H 1.08999 * 109.67583 * 55.43995 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.3830 2.1071 -1.3948 5 1 1.4949 2.6199 0.8027 6 1 3.5870 1.4119 0.5921 7 6 2.0068 -1.2129 0.0005 8 1 3.0822 -1.2156 0.1007 9 6 1.2812 -2.4769 -0.1348 10 8 0.0644 -2.4827 -0.1368 11 7 1.9608 -3.6344 -0.2572 12 6 1.2346 -4.8995 -0.3921 13 6 2.2346 -6.0510 -0.5143 14 6 3.2288 -5.8171 -1.6617 15 8 4.5179 -5.6472 -0.9530 16 6 4.3330 -5.8044 0.3658 17 8 5.2127 -5.6367 1.1872 18 7 3.0913 -6.1616 0.6876 19 6 2.5735 -6.6643 1.9686 20 6 1.8025 -7.9582 1.6593 21 8 0.9050 -7.7369 0.5711 22 6 1.5229 -7.3987 -0.6755 23 1 -0.4851 0.8401 -0.0004 24 1 2.9308 -3.6297 -0.2559 25 1 0.6089 -4.8660 -1.2841 26 1 0.6075 -5.0539 0.4859 27 1 3.2619 -6.6839 -2.3216 28 1 2.9632 -4.9198 -2.2207 29 1 3.3998 -6.8762 2.6471 30 1 1.9048 -5.9281 2.4148 31 1 2.5076 -8.7456 1.3926 32 1 1.2358 -8.2618 2.5395 33 1 0.7627 -7.3216 -1.4529 34 1 2.2478 -8.1664 -0.9460 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001352062135.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:37 Heat of formation + Delta-G solvation = -167.232426 kcal Electronic energy + Delta-G solvation = -21821.071758 eV Core-core repulsion = 18332.712758 eV Total energy + Delta-G solvation = -3488.359000 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 270.109 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.10064 -39.77570 -39.29081 -38.35960 -36.24258 -35.11620 -34.52738 -33.04877 -30.16601 -28.90354 -27.41623 -26.57776 -24.76465 -22.86063 -21.82562 -21.31840 -19.54892 -18.60454 -18.00334 -17.82821 -17.42558 -17.17507 -16.77401 -16.31300 -16.21191 -15.88845 -15.66515 -15.15273 -14.98429 -14.61853 -14.51487 -14.10334 -13.64677 -13.36507 -13.09533 -12.99468 -12.75580 -12.68306 -12.48977 -12.05844 -12.01690 -11.85665 -11.64163 -11.33640 -10.97663 -10.02871 -9.86601 -9.61678 -8.36335 -6.92062 1.21865 1.36733 1.36935 1.48576 1.53167 2.20086 2.24059 2.40396 2.60511 2.87586 3.08545 3.30445 3.52722 3.54312 3.61804 3.93462 4.06814 4.28167 4.31398 4.45412 4.49613 4.55601 4.66885 4.70087 4.79251 4.82181 5.24483 5.26166 5.76530 6.03590 6.06012 6.13242 6.16375 6.79479 6.81253 7.34566 8.39403 8.59484 Molecular weight = 270.11amu Principal moments of inertia in cm(-1) A = 0.024569 B = 0.005834 C = 0.005319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.362533 B = 4798.556693 C = 5262.626852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.035 3.965 3 Si 0.994 3.006 4 H -0.258 1.258 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.578 4.578 8 H 0.075 0.925 9 C 0.544 3.456 10 O -0.623 6.623 11 N -0.756 5.756 12 C 0.142 3.858 13 C 0.075 3.925 14 C 0.055 3.945 15 O -0.345 6.345 16 C 0.647 3.353 17 O -0.569 6.569 18 N -0.617 5.617 19 C 0.104 3.896 20 C 0.055 3.945 21 O -0.388 6.388 22 C 0.073 3.927 23 H 0.277 0.723 24 H 0.382 0.618 25 H 0.076 0.924 26 H 0.044 0.956 27 H 0.162 0.838 28 H 0.117 0.883 29 H 0.107 0.893 30 H 0.067 0.933 31 H 0.077 0.923 32 H 0.134 0.866 33 H 0.138 0.862 34 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.365 -16.825 -2.900 17.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.181 4.181 3 Si 0.813 3.187 4 H -0.182 1.182 5 H -0.193 1.193 6 H -0.181 1.181 7 C -0.615 4.615 8 H 0.093 0.907 9 C 0.349 3.651 10 O -0.510 6.510 11 N -0.411 5.411 12 C 0.016 3.984 13 C -0.011 4.011 14 C -0.019 4.019 15 O -0.255 6.255 16 C 0.401 3.599 17 O -0.458 6.458 18 N -0.364 5.364 19 C -0.016 4.016 20 C -0.022 4.022 21 O -0.306 6.306 22 C -0.004 4.004 23 H 0.087 0.913 24 H 0.214 0.786 25 H 0.094 0.906 26 H 0.062 0.938 27 H 0.180 0.820 28 H 0.135 0.865 29 H 0.126 0.874 30 H 0.085 0.915 31 H 0.095 0.905 32 H 0.152 0.848 33 H 0.156 0.844 34 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.771 -16.658 -2.549 17.268 hybrid contribution 0.810 1.129 0.303 1.423 sum 4.581 -15.528 -2.245 16.345 Atomic orbital electron populations 1.70149 1.09270 1.29130 1.35897 1.26862 0.95517 1.04623 0.91125 0.85068 0.78679 0.75457 0.79500 1.18229 1.19297 1.18085 1.21367 0.94774 0.90801 1.54520 0.90726 1.18415 0.86700 0.83869 0.76146 1.90559 1.15679 1.87398 1.57399 1.45841 1.08549 1.05863 1.80846 1.21123 0.93394 0.82193 1.01655 1.23127 0.92927 0.99278 0.85782 1.25008 0.75912 1.07798 0.93145 1.87667 1.34916 1.85298 1.17623 1.18266 0.83089 0.76206 0.82290 1.90988 1.47609 1.58009 1.49176 1.48271 1.07701 1.67135 1.13312 1.22552 0.99451 0.97104 0.82513 1.23227 0.93638 0.93853 0.91465 1.87916 1.34428 1.89404 1.18829 1.23236 0.99438 0.90163 0.87586 0.91303 0.78557 0.90636 0.93799 0.82037 0.86533 0.87432 0.91475 0.90453 0.84843 0.84404 0.88485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -49.71 11.85 21.84 0.26 -49.45 16 2 C 0.03 1.96 5.49 85.31 0.47 2.42 16 3 Si 0.99 41.89 29.56 68.60 2.03 43.92 16 4 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 5 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 6 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 7 C -0.58 -33.69 9.54 24.83 0.24 -33.46 16 8 H 0.07 4.09 7.85 -2.91 -0.02 4.07 16 9 C 0.54 31.52 7.74 86.36 0.67 32.19 16 10 O -0.62 -40.97 15.04 -4.29 -0.06 -41.04 16 11 N -0.76 -33.74 5.00 -467.41 -2.34 -36.08 16 12 C 0.14 4.93 4.83 86.38 0.42 5.35 16 13 C 0.07 1.78 0.72 3.61 0.00 1.78 16 14 C 0.05 1.10 6.94 72.19 0.50 1.60 16 15 O -0.34 -10.17 11.08 -50.40 -0.56 -10.73 16 16 C 0.65 21.81 8.01 130.04 1.04 22.85 16 17 O -0.57 -23.62 17.75 19.61 0.35 -23.27 16 18 N -0.62 -17.10 2.67 -901.32 -2.40 -19.50 16 19 C 0.10 2.43 7.12 86.54 0.62 3.05 16 20 C 0.06 0.89 7.00 72.24 0.51 1.40 16 21 O -0.39 -7.75 10.52 -148.98 -1.57 -9.32 16 22 C 0.07 1.15 5.71 72.07 0.41 1.56 16 23 H 0.28 15.20 8.29 -92.70 -0.77 14.44 16 24 H 0.38 16.34 6.86 -92.71 -0.64 15.71 16 25 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 26 H 0.04 1.75 8.10 -2.39 -0.02 1.73 16 27 H 0.16 1.55 7.64 -2.39 -0.02 1.53 16 28 H 0.12 2.53 7.47 -2.39 -0.02 2.51 16 29 H 0.11 2.37 7.98 -2.39 -0.02 2.35 16 30 H 0.07 1.83 8.14 -2.39 -0.02 1.82 16 31 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.10 0.99 7.97 -2.39 -0.02 0.97 16 Total: -1.00 -85.43 290.77 1.08 -84.35 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.50 Total: 22.37 kcal Atomic # 6 Polarization: 33.88 SS G_CDS: 4.87 Total: 38.75 kcal Atomic # 7 Polarization: -100.55 SS G_CDS: -4.48 Total: -105.03 kcal Atomic # 8 Polarization: -82.51 SS G_CDS: -1.84 Total: -84.35 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -85.43 1.08 -84.35 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001352062135.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.882 kcal (2) G-P(sol) polarization free energy of solvation -85.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds