Wall clock time and date at job start Mon Mar 30 2020 00:48:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30745 * 1
3 3 Si 1.86796 * 119.99785 * 2 1
4 4 H 1.48500 * 109.47557 * 240.00381 * 3 2 1
5 5 H 1.48499 * 109.47162 * 0.02562 * 3 2 1
6 6 H 1.48507 * 109.46755 * 120.00405 * 3 2 1
7 7 C 1.40033 * 120.00223 * 180.02562 * 2 1 3
8 8 H 1.07994 * 119.99887 * 196.88816 * 7 2 1
9 9 C 1.41541 * 119.99605 * 16.88083 * 7 2 1
10 10 C 1.41187 * 120.99121 * 203.61558 * 9 7 2
11 11 C 1.37591 * 119.01510 * 179.97438 * 10 9 7
12 12 N 1.32079 * 121.11746 * 0.02562 * 11 10 9
13 13 C 1.32485 * 122.22363 * 359.97438 * 12 11 10
14 14 N 1.39380 * 119.57604 * 179.97438 * 13 12 11
15 15 C 1.34773 * 120.00359 * 5.24629 * 14 13 12
16 16 O 1.21519 * 119.99695 * 355.14937 * 15 14 13
17 17 C 1.48103 * 120.00193 * 175.14254 * 15 14 13
18 18 C 1.39745 * 120.18951 * 180.02562 * 17 15 14
19 19 C 1.38810 * 117.90272 * 180.02562 * 18 17 15
20 20 C 1.38584 * 118.06941 * 0.24936 * 19 18 17
21 21 N 1.32173 * 120.06906 * 359.48918 * 20 19 18
22 22 N 1.28355 * 122.30617 * 0.53251 * 21 20 19
23 23 C 1.38623 * 120.84061 * 0.26195 * 13 12 11
24 24 H 0.96997 * 120.00105 * 359.97438 * 1 2 3
25 25 H 1.07996 * 120.49220 * 0.02562 * 10 9 7
26 26 H 1.08003 * 119.43998 * 180.02562 * 11 10 9
27 27 H 0.97002 * 119.99675 * 185.24688 * 14 13 12
28 28 H 1.08002 * 121.04351 * 0.04666 * 18 17 15
29 29 H 1.07996 * 120.96479 * 179.97438 * 19 18 17
30 30 H 1.07996 * 119.96653 * 179.72480 * 20 19 18
31 31 H 1.08000 * 120.60225 * 179.74198 * 23 13 12
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3075 0.0000 0.0000
3 14 2.2414 1.6177 0.0000
4 1 3.0951 1.6966 -1.2125
5 1 1.2763 2.7464 0.0006
6 1 3.0952 1.6963 1.2125
7 6 2.0077 -1.2127 -0.0005
8 1 3.0527 -1.2329 0.2711
9 6 1.3457 -2.4119 -0.3570
10 6 1.8234 -3.6649 0.0845
11 6 1.1479 -4.8050 -0.2859
12 7 0.0676 -4.7426 -1.0432
13 6 -0.4211 -3.5926 -1.4835
14 7 -1.5646 -3.5910 -2.2803
15 6 -2.2267 -4.7420 -2.5113
16 8 -1.7788 -5.7937 -2.0990
17 6 -3.5000 -4.7250 -3.2675
18 6 -4.1900 -5.9161 -3.5087
19 6 -5.3782 -5.8452 -4.2227
20 6 -5.8049 -4.6002 -4.6569
21 7 -5.0921 -3.5222 -4.3800
22 7 -3.9923 -3.5778 -3.7205
23 6 0.1939 -2.3913 -1.1666
24 1 -0.4850 0.8400 0.0004
25 1 2.7055 -3.7276 0.7045
26 1 1.5071 -5.7671 0.0484
27 1 -1.8840 -2.7615 -2.6686
28 1 -3.8107 -6.8618 -3.1506
29 1 -5.9513 -6.7351 -4.4376
30 1 -6.7228 -4.5103 -5.2188
31 1 -0.2055 -1.4563 -1.5310
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001435479085.mol2 31
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 00:48:07
Heat of formation + Delta-G solvation = 65.755494 kcal
Electronic energy + Delta-G solvation = -19040.046732 eV
Core-core repulsion = 15901.392516 eV
Total energy + Delta-G solvation = -3138.654215 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 270.086 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-41.21209 -39.43664 -37.76330 -34.48539 -33.89094 -33.24666 -32.69142 -30.56669
-28.70622 -26.03594 -25.48729 -24.67959 -22.15338 -21.85403 -20.13507 -18.21926
-17.82514 -17.23074 -16.83791 -15.68992 -15.44040 -15.27395 -14.76451 -14.24247
-14.19346 -14.01242 -13.70678 -13.37516 -12.84600 -12.62528 -12.34756 -11.59253
-11.46094 -11.22098 -10.90573 -10.49331 -10.34145 -10.22855 -10.17785 -9.96150
-9.82372 -9.67349 -9.36157 -8.03611 -7.80929 -7.07878 -6.83252 -4.62687
0.36301 0.58524 2.47224 2.79297 3.02129 3.03898 3.05286 3.25818
3.28699 3.77750 3.84693 3.86143 4.26722 4.47857 4.52587 4.65449
4.81559 4.99347 5.49636 5.65308 5.67442 5.87216 5.97920 6.53398
6.61503 6.77425 6.92593 7.08431 7.33241 7.40955 7.69048 7.88149
8.15233 8.33510 8.42009 8.63106 8.72000 8.76431 9.62968 10.05429
Molecular weight = 270.09amu
Principal moments of inertia in cm(-1)
A = 0.024714 B = 0.004660 C = 0.003961
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1132.675663 B = 6007.603503 C = 7066.618618
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.784 5.784
2 C 0.078 3.922
3 Si 0.912 3.088
4 H -0.262 1.262
5 H -0.277 1.277
6 H -0.264 1.264
7 C -0.455 4.455
8 H 0.083 0.917
9 C 0.143 3.857
10 C -0.283 4.283
11 C 0.120 3.880
12 N -0.558 5.558
13 C 0.332 3.668
14 N -0.633 5.633
15 C 0.558 3.442
16 O -0.468 6.468
17 C 0.035 3.965
18 C -0.067 4.067
19 C -0.124 4.124
20 C 0.047 3.953
21 N -0.242 5.242
22 N -0.212 5.212
23 C -0.237 4.237
24 H 0.284 0.716
25 H 0.103 0.897
26 H 0.125 0.875
27 H 0.419 0.581
28 H 0.163 0.837
29 H 0.156 0.844
30 H 0.176 0.824
31 H 0.130 0.870
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.442 -5.323 -7.295 13.065
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.409 5.409
2 C -0.142 4.142
3 Si 0.736 3.264
4 H -0.186 1.186
5 H -0.202 1.202
6 H -0.189 1.189
7 C -0.486 4.486
8 H 0.101 0.899
9 C 0.135 3.865
10 C -0.307 4.307
11 C -0.035 4.035
12 N -0.277 5.277
13 C 0.108 3.892
14 N -0.279 5.279
15 C 0.339 3.661
16 O -0.337 6.337
17 C -0.111 4.111
18 C -0.097 4.097
19 C -0.153 4.153
20 C -0.116 4.116
21 N -0.085 5.085
22 N -0.059 5.059
23 C -0.263 4.263
24 H 0.095 0.905
25 H 0.121 0.879
26 H 0.142 0.858
27 H 0.256 0.744
28 H 0.181 0.819
29 H 0.174 0.826
30 H 0.193 0.807
31 H 0.148 0.852
Dipole moment (debyes) X Y Z Total
from point charges -9.628 -5.103 -7.345 13.141
hybrid contribution 0.252 0.436 0.195 0.540
sum -9.376 -4.667 -7.149 12.681
Atomic orbital electron populations
1.69760 1.07721 1.29759 1.33672 1.25976 0.94770 1.01557 0.91855
0.86296 0.80134 0.79810 0.80125 1.18648 1.20183 1.18866 1.19560
0.97943 0.90709 1.40380 0.89888 1.17554 0.89773 0.92333 0.86826
1.21897 1.05254 0.93842 1.09704 1.21745 0.90854 0.96882 0.93972
1.67185 1.15699 1.26398 1.18429 1.18138 0.87123 0.91063 0.92850
1.43214 1.25476 1.10680 1.48510 1.17654 0.82624 0.85081 0.80747
1.90884 1.65375 1.29745 1.47665 1.23193 0.97673 0.91926 0.98358
1.22475 0.93366 1.00153 0.93685 1.22435 0.96245 0.99962 0.96633
1.24486 1.00397 0.90011 0.96669 1.73149 1.00326 1.27202 1.07801
1.73289 1.05125 1.23558 1.03907 1.21569 1.02327 0.95546 1.06814
0.90456 0.87879 0.85769 0.74403 0.81900 0.82585 0.80693 0.85245
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.78 -19.52 10.93 55.55 0.61 -18.91 16
2 C 0.08 1.89 5.20 -17.34 -0.09 1.80 16
3 Si 0.91 17.95 29.59 -169.99 -5.03 12.92 16
4 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16
5 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16
6 H -0.26 -5.14 7.11 56.52 0.40 -4.73 16
7 C -0.46 -11.67 9.12 -37.65 -0.34 -12.02 16
8 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16
9 C 0.14 3.77 5.60 -106.55 -0.60 3.18 16
10 C -0.28 -6.91 9.90 -38.70 -0.38 -7.29 16
11 C 0.12 2.85 11.15 -17.68 -0.20 2.66 16
12 N -0.56 -14.21 7.85 -12.54 -0.10 -14.30 16
13 C 0.33 8.22 7.41 -154.77 -1.15 7.07 16
14 N -0.63 -13.33 5.37 -12.28 -0.07 -13.40 16
15 C 0.56 11.05 7.77 -12.21 -0.09 10.96 16
16 O -0.47 -10.51 14.65 5.35 0.08 -10.43 16
17 C 0.04 0.55 6.83 -82.83 -0.57 -0.01 16
18 C -0.07 -0.80 9.73 -38.81 -0.38 -1.18 16
19 C -0.12 -1.04 10.20 -39.24 -0.40 -1.44 16
20 C 0.05 0.44 11.31 -17.28 -0.20 0.25 16
21 N -0.24 -3.32 11.51 30.59 0.35 -2.97 16
22 N -0.21 -3.36 10.76 33.32 0.36 -3.00 16
23 C -0.24 -6.10 8.62 -38.47 -0.33 -6.43 16
24 H 0.28 6.44 8.29 -40.82 -0.34 6.10 16
25 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16
26 H 0.12 2.56 8.06 -52.48 -0.42 2.13 16
27 H 0.42 7.94 8.06 -40.82 -0.33 7.61 16
28 H 0.16 1.76 7.72 -52.49 -0.41 1.35 16
29 H 0.16 0.66 8.06 -52.49 -0.42 0.24 16
30 H 0.18 0.90 8.06 -52.49 -0.42 0.48 16
31 H 0.13 3.33 6.20 -52.49 -0.33 3.00 16
LS Contribution 285.22 15.07 4.30 4.30
Total: -1.00 -31.71 285.22 -6.52 -38.23
By element:
Atomic # 1 Polarization: 12.34 SS G_CDS: -2.30 Total: 10.04 kcal
Atomic # 6 Polarization: 2.26 SS G_CDS: -4.72 Total: -2.47 kcal
Atomic # 7 Polarization: -53.74 SS G_CDS: 1.15 Total: -52.58 kcal
Atomic # 8 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.43 kcal
Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal
Total LS contribution 4.30 Total: 4.30 kcal
Total: -31.71 -6.52 -38.23 kcal
The number of atoms in the molecule is 31
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001435479085.mol2 31
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 103.989 kcal
(2) G-P(sol) polarization free energy of solvation -31.709 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.280 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.524 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.233 kcal
(6) G-S(sol) free energy of system = (1) + (5) 65.755 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds