Wall clock time and date at job start Mon Mar 30 2020 00:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86796 * 119.99785 * 2 1 4 4 H 1.48500 * 109.47557 * 240.00381 * 3 2 1 5 5 H 1.48499 * 109.47162 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46755 * 120.00405 * 3 2 1 7 7 C 1.40033 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99887 * 196.88816 * 7 2 1 9 9 C 1.41541 * 119.99605 * 16.88083 * 7 2 1 10 10 C 1.41187 * 120.99121 * 203.61558 * 9 7 2 11 11 C 1.37591 * 119.01510 * 179.97438 * 10 9 7 12 12 N 1.32079 * 121.11746 * 0.02562 * 11 10 9 13 13 C 1.32485 * 122.22363 * 359.97438 * 12 11 10 14 14 N 1.39380 * 119.57604 * 179.97438 * 13 12 11 15 15 C 1.34773 * 120.00359 * 5.24629 * 14 13 12 16 16 O 1.21519 * 119.99695 * 355.14937 * 15 14 13 17 17 C 1.48103 * 120.00193 * 175.14254 * 15 14 13 18 18 C 1.39745 * 120.18951 * 180.02562 * 17 15 14 19 19 C 1.38810 * 117.90272 * 180.02562 * 18 17 15 20 20 C 1.38584 * 118.06941 * 0.24936 * 19 18 17 21 21 N 1.32173 * 120.06906 * 359.48918 * 20 19 18 22 22 N 1.28355 * 122.30617 * 0.53251 * 21 20 19 23 23 C 1.38623 * 120.84061 * 0.26195 * 13 12 11 24 24 H 0.96997 * 120.00105 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.49220 * 0.02562 * 10 9 7 26 26 H 1.08003 * 119.43998 * 180.02562 * 11 10 9 27 27 H 0.97002 * 119.99675 * 185.24688 * 14 13 12 28 28 H 1.08002 * 121.04351 * 0.04666 * 18 17 15 29 29 H 1.07996 * 120.96479 * 179.97438 * 19 18 17 30 30 H 1.07996 * 119.96653 * 179.72480 * 20 19 18 31 31 H 1.08000 * 120.60225 * 179.74198 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6966 -1.2125 5 1 1.2763 2.7464 0.0006 6 1 3.0952 1.6963 1.2125 7 6 2.0077 -1.2127 -0.0005 8 1 3.0527 -1.2329 0.2711 9 6 1.3457 -2.4119 -0.3570 10 6 1.8234 -3.6649 0.0845 11 6 1.1479 -4.8050 -0.2859 12 7 0.0676 -4.7426 -1.0432 13 6 -0.4211 -3.5926 -1.4835 14 7 -1.5646 -3.5910 -2.2803 15 6 -2.2267 -4.7420 -2.5113 16 8 -1.7788 -5.7937 -2.0990 17 6 -3.5000 -4.7250 -3.2675 18 6 -4.1900 -5.9161 -3.5087 19 6 -5.3782 -5.8452 -4.2227 20 6 -5.8049 -4.6002 -4.6569 21 7 -5.0921 -3.5222 -4.3800 22 7 -3.9923 -3.5778 -3.7205 23 6 0.1939 -2.3913 -1.1666 24 1 -0.4850 0.8400 0.0004 25 1 2.7055 -3.7276 0.7045 26 1 1.5071 -5.7671 0.0484 27 1 -1.8840 -2.7615 -2.6686 28 1 -3.8107 -6.8618 -3.1506 29 1 -5.9513 -6.7351 -4.4376 30 1 -6.7228 -4.5103 -5.2188 31 1 -0.2055 -1.4563 -1.5310 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001435479085.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:07 Heat of formation + Delta-G solvation = 65.755494 kcal Electronic energy + Delta-G solvation = -19040.046732 eV Core-core repulsion = 15901.392516 eV Total energy + Delta-G solvation = -3138.654215 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.21209 -39.43664 -37.76330 -34.48539 -33.89094 -33.24666 -32.69142 -30.56669 -28.70622 -26.03594 -25.48729 -24.67959 -22.15338 -21.85403 -20.13507 -18.21926 -17.82514 -17.23074 -16.83791 -15.68992 -15.44040 -15.27395 -14.76451 -14.24247 -14.19346 -14.01242 -13.70678 -13.37516 -12.84600 -12.62528 -12.34756 -11.59253 -11.46094 -11.22098 -10.90573 -10.49331 -10.34145 -10.22855 -10.17785 -9.96150 -9.82372 -9.67349 -9.36157 -8.03611 -7.80929 -7.07878 -6.83252 -4.62687 0.36301 0.58524 2.47224 2.79297 3.02129 3.03898 3.05286 3.25818 3.28699 3.77750 3.84693 3.86143 4.26722 4.47857 4.52587 4.65449 4.81559 4.99347 5.49636 5.65308 5.67442 5.87216 5.97920 6.53398 6.61503 6.77425 6.92593 7.08431 7.33241 7.40955 7.69048 7.88149 8.15233 8.33510 8.42009 8.63106 8.72000 8.76431 9.62968 10.05429 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.024714 B = 0.004660 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.675663 B = 6007.603503 C = 7066.618618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.078 3.922 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.455 4.455 8 H 0.083 0.917 9 C 0.143 3.857 10 C -0.283 4.283 11 C 0.120 3.880 12 N -0.558 5.558 13 C 0.332 3.668 14 N -0.633 5.633 15 C 0.558 3.442 16 O -0.468 6.468 17 C 0.035 3.965 18 C -0.067 4.067 19 C -0.124 4.124 20 C 0.047 3.953 21 N -0.242 5.242 22 N -0.212 5.212 23 C -0.237 4.237 24 H 0.284 0.716 25 H 0.103 0.897 26 H 0.125 0.875 27 H 0.419 0.581 28 H 0.163 0.837 29 H 0.156 0.844 30 H 0.176 0.824 31 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.442 -5.323 -7.295 13.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.142 4.142 3 Si 0.736 3.264 4 H -0.186 1.186 5 H -0.202 1.202 6 H -0.189 1.189 7 C -0.486 4.486 8 H 0.101 0.899 9 C 0.135 3.865 10 C -0.307 4.307 11 C -0.035 4.035 12 N -0.277 5.277 13 C 0.108 3.892 14 N -0.279 5.279 15 C 0.339 3.661 16 O -0.337 6.337 17 C -0.111 4.111 18 C -0.097 4.097 19 C -0.153 4.153 20 C -0.116 4.116 21 N -0.085 5.085 22 N -0.059 5.059 23 C -0.263 4.263 24 H 0.095 0.905 25 H 0.121 0.879 26 H 0.142 0.858 27 H 0.256 0.744 28 H 0.181 0.819 29 H 0.174 0.826 30 H 0.193 0.807 31 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -9.628 -5.103 -7.345 13.141 hybrid contribution 0.252 0.436 0.195 0.540 sum -9.376 -4.667 -7.149 12.681 Atomic orbital electron populations 1.69760 1.07721 1.29759 1.33672 1.25976 0.94770 1.01557 0.91855 0.86296 0.80134 0.79810 0.80125 1.18648 1.20183 1.18866 1.19560 0.97943 0.90709 1.40380 0.89888 1.17554 0.89773 0.92333 0.86826 1.21897 1.05254 0.93842 1.09704 1.21745 0.90854 0.96882 0.93972 1.67185 1.15699 1.26398 1.18429 1.18138 0.87123 0.91063 0.92850 1.43214 1.25476 1.10680 1.48510 1.17654 0.82624 0.85081 0.80747 1.90884 1.65375 1.29745 1.47665 1.23193 0.97673 0.91926 0.98358 1.22475 0.93366 1.00153 0.93685 1.22435 0.96245 0.99962 0.96633 1.24486 1.00397 0.90011 0.96669 1.73149 1.00326 1.27202 1.07801 1.73289 1.05125 1.23558 1.03907 1.21569 1.02327 0.95546 1.06814 0.90456 0.87879 0.85769 0.74403 0.81900 0.82585 0.80693 0.85245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.52 10.93 55.55 0.61 -18.91 16 2 C 0.08 1.89 5.20 -17.34 -0.09 1.80 16 3 Si 0.91 17.95 29.59 -169.99 -5.03 12.92 16 4 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 5 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 6 H -0.26 -5.14 7.11 56.52 0.40 -4.73 16 7 C -0.46 -11.67 9.12 -37.65 -0.34 -12.02 16 8 H 0.08 2.02 7.90 -52.49 -0.41 1.61 16 9 C 0.14 3.77 5.60 -106.55 -0.60 3.18 16 10 C -0.28 -6.91 9.90 -38.70 -0.38 -7.29 16 11 C 0.12 2.85 11.15 -17.68 -0.20 2.66 16 12 N -0.56 -14.21 7.85 -12.54 -0.10 -14.30 16 13 C 0.33 8.22 7.41 -154.77 -1.15 7.07 16 14 N -0.63 -13.33 5.37 -12.28 -0.07 -13.40 16 15 C 0.56 11.05 7.77 -12.21 -0.09 10.96 16 16 O -0.47 -10.51 14.65 5.35 0.08 -10.43 16 17 C 0.04 0.55 6.83 -82.83 -0.57 -0.01 16 18 C -0.07 -0.80 9.73 -38.81 -0.38 -1.18 16 19 C -0.12 -1.04 10.20 -39.24 -0.40 -1.44 16 20 C 0.05 0.44 11.31 -17.28 -0.20 0.25 16 21 N -0.24 -3.32 11.51 30.59 0.35 -2.97 16 22 N -0.21 -3.36 10.76 33.32 0.36 -3.00 16 23 C -0.24 -6.10 8.62 -38.47 -0.33 -6.43 16 24 H 0.28 6.44 8.29 -40.82 -0.34 6.10 16 25 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 26 H 0.12 2.56 8.06 -52.48 -0.42 2.13 16 27 H 0.42 7.94 8.06 -40.82 -0.33 7.61 16 28 H 0.16 1.76 7.72 -52.49 -0.41 1.35 16 29 H 0.16 0.66 8.06 -52.49 -0.42 0.24 16 30 H 0.18 0.90 8.06 -52.49 -0.42 0.48 16 31 H 0.13 3.33 6.20 -52.49 -0.33 3.00 16 LS Contribution 285.22 15.07 4.30 4.30 Total: -1.00 -31.71 285.22 -6.52 -38.23 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -2.30 Total: 10.04 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -4.72 Total: -2.47 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: 1.15 Total: -52.58 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.43 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.71 -6.52 -38.23 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435479085.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.989 kcal (2) G-P(sol) polarization free energy of solvation -31.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds