Wall clock time and date at job start Mon Mar 30 2020 00:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30745 * 1 3 3 Si 1.86796 * 119.99785 * 2 1 4 4 H 1.48500 * 109.47557 * 240.00381 * 3 2 1 5 5 H 1.48499 * 109.47162 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46755 * 120.00405 * 3 2 1 7 7 C 1.40033 * 120.00223 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99887 * 196.88816 * 7 2 1 9 9 C 1.41541 * 119.99605 * 16.88083 * 7 2 1 10 10 C 1.41187 * 120.99121 * 203.61558 * 9 7 2 11 11 C 1.37591 * 119.01510 * 179.97438 * 10 9 7 12 12 N 1.32079 * 121.11746 * 0.02562 * 11 10 9 13 13 C 1.32485 * 122.22363 * 359.97438 * 12 11 10 14 14 N 1.39380 * 119.57604 * 179.97438 * 13 12 11 15 15 C 1.34773 * 120.00359 * 5.24629 * 14 13 12 16 16 O 1.21519 * 119.99695 * 355.14937 * 15 14 13 17 17 C 1.48103 * 120.00193 * 175.14254 * 15 14 13 18 18 C 1.39745 * 120.18951 * 180.02562 * 17 15 14 19 19 C 1.38810 * 117.90272 * 180.02562 * 18 17 15 20 20 C 1.38584 * 118.06941 * 0.24936 * 19 18 17 21 21 N 1.32173 * 120.06906 * 359.48918 * 20 19 18 22 22 N 1.28355 * 122.30617 * 0.53251 * 21 20 19 23 23 C 1.38623 * 120.84061 * 0.26195 * 13 12 11 24 24 H 0.96997 * 120.00105 * 359.97438 * 1 2 3 25 25 H 1.07996 * 120.49220 * 0.02562 * 10 9 7 26 26 H 1.08003 * 119.43998 * 180.02562 * 11 10 9 27 27 H 0.97002 * 119.99675 * 185.24688 * 14 13 12 28 28 H 1.08002 * 121.04351 * 0.04666 * 18 17 15 29 29 H 1.07996 * 120.96479 * 179.97438 * 19 18 17 30 30 H 1.07996 * 119.96653 * 179.72480 * 20 19 18 31 31 H 1.08000 * 120.60225 * 179.74198 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6966 -1.2125 5 1 1.2763 2.7464 0.0006 6 1 3.0952 1.6963 1.2125 7 6 2.0077 -1.2127 -0.0005 8 1 3.0527 -1.2329 0.2711 9 6 1.3457 -2.4119 -0.3570 10 6 1.8234 -3.6649 0.0845 11 6 1.1479 -4.8050 -0.2859 12 7 0.0676 -4.7426 -1.0432 13 6 -0.4211 -3.5926 -1.4835 14 7 -1.5646 -3.5910 -2.2803 15 6 -2.2267 -4.7420 -2.5113 16 8 -1.7788 -5.7937 -2.0990 17 6 -3.5000 -4.7250 -3.2675 18 6 -4.1900 -5.9161 -3.5087 19 6 -5.3782 -5.8452 -4.2227 20 6 -5.8049 -4.6002 -4.6569 21 7 -5.0921 -3.5222 -4.3800 22 7 -3.9923 -3.5778 -3.7205 23 6 0.1939 -2.3913 -1.1666 24 1 -0.4850 0.8400 0.0004 25 1 2.7055 -3.7276 0.7045 26 1 1.5071 -5.7671 0.0484 27 1 -1.8840 -2.7615 -2.6686 28 1 -3.8107 -6.8618 -3.1506 29 1 -5.9513 -6.7351 -4.4376 30 1 -6.7228 -4.5103 -5.2188 31 1 -0.2055 -1.4563 -1.5310 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001435479085.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:48:06 Heat of formation + Delta-G solvation = 44.187104 kcal Electronic energy + Delta-G solvation = -19040.982007 eV Core-core repulsion = 15901.392516 eV Total energy + Delta-G solvation = -3139.589491 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.27654 -41.05454 -39.51199 -36.24817 -35.64010 -34.20049 -33.77533 -32.48268 -30.48446 -27.95006 -26.67073 -25.60836 -23.92012 -23.52706 -21.78685 -19.63467 -19.53280 -18.40311 -17.77618 -17.29899 -17.02514 -16.72980 -16.19545 -16.08434 -15.65208 -15.49579 -15.05011 -14.63085 -14.37005 -14.18831 -14.15564 -13.22054 -12.94181 -12.69354 -12.57525 -12.10941 -11.96322 -11.60920 -11.33619 -11.31810 -11.20616 -11.17234 -10.87423 -9.99232 -9.70704 -8.93914 -8.67651 -6.58732 -0.64587 -0.27482 0.73128 0.98108 1.40676 1.52167 1.55561 1.73662 1.84455 2.19207 2.56643 2.72959 2.79689 3.38177 3.54556 3.71416 3.73632 3.90421 4.09442 4.19525 4.68876 4.75744 4.77110 4.85468 4.90786 5.03723 5.15491 5.19598 5.44418 5.55643 5.86488 6.03907 6.35462 6.49872 6.75475 6.80150 7.00821 7.46599 7.74340 8.24086 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.024714 B = 0.004660 C = 0.003961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.675663 B = 6007.603503 C = 7066.618618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.039 3.961 3 Si 0.989 3.011 4 H -0.259 1.259 5 H -0.267 1.267 6 H -0.257 1.257 7 C -0.483 4.483 8 H 0.088 0.912 9 C 0.115 3.885 10 C -0.296 4.296 11 C 0.116 3.884 12 N -0.578 5.578 13 C 0.329 3.671 14 N -0.636 5.636 15 C 0.558 3.442 16 O -0.501 6.501 17 C 0.012 3.988 18 C -0.076 4.076 19 C -0.091 4.091 20 C 0.060 3.940 21 N -0.274 5.274 22 N -0.241 5.241 23 C -0.259 4.259 24 H 0.293 0.707 25 H 0.120 0.880 26 H 0.156 0.844 27 H 0.425 0.575 28 H 0.171 0.829 29 H 0.212 0.788 30 H 0.225 0.775 31 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.087 -5.648 -8.317 14.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.179 4.179 3 Si 0.809 3.191 4 H -0.183 1.183 5 H -0.191 1.191 6 H -0.181 1.181 7 C -0.514 4.514 8 H 0.107 0.893 9 C 0.107 3.893 10 C -0.319 4.319 11 C -0.038 4.038 12 N -0.299 5.299 13 C 0.104 3.896 14 N -0.282 5.282 15 C 0.342 3.658 16 O -0.372 6.372 17 C -0.135 4.135 18 C -0.105 4.105 19 C -0.120 4.120 20 C -0.102 4.102 21 N -0.116 5.116 22 N -0.088 5.088 23 C -0.284 4.284 24 H 0.104 0.896 25 H 0.138 0.862 26 H 0.173 0.827 27 H 0.263 0.737 28 H 0.188 0.812 29 H 0.229 0.771 30 H 0.242 0.758 31 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.296 -5.431 -8.378 15.076 hybrid contribution 0.584 0.451 0.441 0.860 sum -10.712 -4.980 -7.937 14.232 Atomic orbital electron populations 1.69814 1.09256 1.31252 1.33351 1.26883 0.95499 1.04812 0.90672 0.85149 0.78729 0.75002 0.80263 1.18313 1.19124 1.18079 1.19892 0.98433 0.91611 1.41429 0.89348 1.17986 0.90386 0.93581 0.87331 1.22103 1.06056 0.93516 1.10255 1.22270 0.90237 0.98144 0.93107 1.67321 1.16550 1.26626 1.19367 1.18367 0.87826 0.90721 0.92676 1.43269 1.24818 1.11799 1.48279 1.18244 0.83562 0.83952 0.80069 1.90838 1.66699 1.30512 1.49121 1.22657 0.96690 0.93912 1.00223 1.22699 0.94531 0.98908 0.94348 1.23022 0.94255 1.01519 0.93218 1.25330 1.00753 0.89194 0.94967 1.73070 1.00292 1.29609 1.08653 1.73204 1.06572 1.23971 1.05055 1.21535 1.03209 0.95601 1.08093 0.89597 0.86190 0.82661 0.73714 0.81174 0.77125 0.75820 0.86127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.23 10.93 21.84 0.24 -40.99 16 2 C 0.04 1.90 5.20 85.29 0.44 2.34 16 3 Si 0.99 36.56 29.59 68.60 2.03 38.59 16 4 H -0.26 -9.39 7.11 99.48 0.71 -8.69 16 5 H -0.27 -9.35 7.11 99.48 0.71 -8.65 16 6 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 7 C -0.48 -25.34 9.12 23.52 0.21 -25.12 16 8 H 0.09 4.37 7.90 -2.91 -0.02 4.35 16 9 C 0.12 6.28 5.60 -21.11 -0.12 6.16 16 10 C -0.30 -14.75 9.90 22.84 0.23 -14.52 16 11 C 0.12 5.61 11.15 84.50 0.94 6.55 16 12 N -0.58 -30.32 7.85 -193.57 -1.52 -31.84 16 13 C 0.33 16.99 7.41 132.78 0.98 17.98 16 14 N -0.64 -28.13 5.37 -311.06 -1.67 -29.80 16 15 C 0.56 22.94 7.77 86.86 0.68 23.61 16 16 O -0.50 -23.19 14.65 -3.78 -0.06 -23.24 16 17 C 0.01 0.38 6.83 41.98 0.29 0.67 16 18 C -0.08 -1.67 9.73 22.77 0.22 -1.45 16 19 C -0.09 -1.12 10.20 22.49 0.23 -0.89 16 20 C 0.06 0.87 11.31 84.72 0.96 1.83 16 21 N -0.27 -7.08 11.51 -57.14 -0.66 -7.74 16 22 N -0.24 -7.69 10.76 -48.50 -0.52 -8.21 16 23 C -0.26 -13.95 8.62 22.99 0.20 -13.75 16 24 H 0.29 13.41 8.29 -92.71 -0.77 12.64 16 25 H 0.12 5.39 8.06 -2.91 -0.02 5.37 16 26 H 0.16 6.32 8.06 -2.91 -0.02 6.30 16 27 H 0.42 17.18 8.06 -92.71 -0.75 16.44 16 28 H 0.17 3.41 7.72 -2.91 -0.02 3.39 16 29 H 0.21 0.31 8.06 -2.91 -0.02 0.28 16 30 H 0.23 0.95 8.06 -2.91 -0.02 0.92 16 31 H 0.12 6.56 6.20 -2.91 -0.02 6.54 16 Total: -1.00 -72.91 285.22 3.55 -69.36 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: 0.45 Total: 30.47 kcal Atomic # 6 Polarization: -1.84 SS G_CDS: 5.26 Total: 3.42 kcal Atomic # 7 Polarization: -114.46 SS G_CDS: -4.13 Total: -118.59 kcal Atomic # 8 Polarization: -23.19 SS G_CDS: -0.06 Total: -23.24 kcal Atomic # 14 Polarization: 36.56 SS G_CDS: 2.03 Total: 38.59 kcal Total: -72.91 3.55 -69.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001435479085.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.547 kcal (2) G-P(sol) polarization free energy of solvation -72.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds