Wall clock time and date at job start Mon Mar 30 2020 00:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30744 * 1 3 3 Si 1.86790 * 120.00047 * 2 1 4 4 H 1.48505 * 109.47398 * 359.97438 * 3 2 1 5 5 H 1.48496 * 109.47435 * 120.00190 * 3 2 1 6 6 H 1.48504 * 109.47276 * 240.00079 * 3 2 1 7 7 C 1.40031 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99898 * 1.91068 * 7 2 1 9 9 C 1.41335 * 119.99691 * 181.91069 * 7 2 1 10 10 C 1.40617 * 119.78394 * 187.00220 * 9 7 2 11 11 C 1.38307 * 119.13076 * 179.76798 * 10 9 7 12 12 C 1.38695 * 118.67252 * 0.49882 * 11 10 9 13 13 C 1.39649 * 119.49169 * 359.74257 * 12 11 10 14 14 N 1.39176 * 119.57700 * 179.97438 * 13 12 11 15 15 C 1.34774 * 120.00015 * 18.95861 * 14 13 12 16 16 O 1.21522 * 119.99689 * 5.61785 * 15 14 13 17 17 C 1.48088 * 120.00416 * 185.61718 * 15 14 13 18 18 C 1.40131 * 121.15162 * 179.72141 * 17 15 14 19 19 C 1.38489 * 117.82432 * 179.78455 * 18 17 15 20 20 N 1.31927 * 119.96976 * 0.49405 * 19 18 17 21 21 N 1.28277 * 122.52190 * 359.74376 * 20 19 18 22 22 C 1.31918 * 122.32469 * 359.97438 * 21 20 19 23 23 N 1.31951 * 120.85114 * 0.02562 * 13 12 11 24 24 H 0.97000 * 120.00284 * 174.83177 * 1 2 3 25 25 H 1.08002 * 120.43472 * 359.97438 * 10 9 7 26 26 H 1.08002 * 120.66675 * 180.23921 * 11 10 9 27 27 H 1.07996 * 120.25388 * 179.76660 * 12 11 10 28 28 H 0.97001 * 120.00274 * 198.96249 * 14 13 12 29 29 H 1.08011 * 121.08600 * 359.97438 * 18 17 15 30 30 H 1.08003 * 120.01617 * 180.21698 * 19 18 17 31 31 H 1.08009 * 120.17169 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6176 0.0000 4 1 1.2764 2.7464 -0.0006 5 1 3.0952 1.6963 1.2124 6 1 3.0952 1.6963 -1.2125 7 6 2.0075 -1.2127 0.0005 8 1 1.4679 -2.1478 -0.0302 9 6 3.4203 -1.2130 0.0414 10 6 4.1231 -2.4219 -0.1068 11 6 5.5056 -2.4060 -0.0696 12 6 6.1521 -1.1943 0.1239 13 6 5.3977 -0.0281 0.2698 14 7 6.0447 1.1886 0.4646 15 6 7.3459 1.3198 0.1388 16 8 7.9273 0.4098 -0.4185 17 6 8.0670 2.5727 0.4600 18 6 9.4213 2.7326 0.1375 19 6 10.0263 3.9345 0.4653 20 7 9.3314 4.8787 1.0704 21 7 8.0928 4.7369 1.3728 22 6 7.4218 3.6344 1.0999 23 7 4.0795 -0.0652 0.2264 24 1 -0.4850 -0.8366 -0.0757 25 1 3.5904 -3.3503 -0.2512 26 1 6.0703 -3.3193 -0.1846 27 1 7.2306 -1.1529 0.1611 28 1 5.5591 1.9423 0.8349 29 1 9.9744 1.9455 -0.3536 30 1 11.0677 4.0970 0.2299 31 1 6.3792 3.5526 1.3700 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001455176828.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:47 Heat of formation + Delta-G solvation = 58.801207 kcal Electronic energy + Delta-G solvation = -19320.368066 eV Core-core repulsion = 16181.412290 eV Total energy + Delta-G solvation = -3138.955776 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.086 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.51536 -40.12719 -38.28547 -34.96571 -33.84525 -33.40903 -32.83391 -31.25915 -29.69027 -26.18162 -25.32495 -24.85147 -22.55549 -21.95455 -20.39355 -18.84052 -18.27125 -17.86200 -16.80607 -16.51196 -15.79452 -15.55233 -15.22372 -14.87360 -14.46536 -14.18950 -13.79485 -13.64671 -13.18986 -12.84224 -12.33265 -11.99228 -11.45192 -11.32258 -10.97962 -10.55586 -10.50090 -10.46246 -10.32554 -10.17084 -9.77140 -9.51750 -9.28299 -8.70037 -7.93781 -7.57617 -7.35236 -4.89414 -0.00562 0.52433 2.08281 2.51109 2.75814 2.84735 3.36897 3.45574 3.55293 3.73098 3.88284 3.97655 4.18716 4.27327 4.30742 4.51315 4.53347 4.94773 5.27564 5.40109 5.45353 5.69761 5.74233 5.86061 6.27397 6.35380 6.39133 6.93344 6.98904 7.30751 7.37338 7.43456 7.59067 7.93796 8.02036 8.22306 8.29926 8.52354 9.24563 9.90316 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.024139 B = 0.005676 C = 0.004662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.659305 B = 4931.637003 C = 6004.268925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.043 3.957 3 Si 1.155 2.845 4 H -0.329 1.329 5 H -0.284 1.284 6 H -0.293 1.293 7 C -0.472 4.472 8 H 0.085 0.915 9 C 0.273 3.727 10 C -0.270 4.270 11 C -0.034 4.034 12 C -0.310 4.310 13 C 0.383 3.617 14 N -0.643 5.643 15 C 0.563 3.437 16 O -0.496 6.496 17 C -0.126 4.126 18 C -0.056 4.056 19 C 0.038 3.962 20 N -0.229 5.229 21 N -0.239 5.239 22 C 0.071 3.929 23 N -0.597 5.597 24 H 0.284 0.716 25 H 0.107 0.893 26 H 0.108 0.892 27 H 0.138 0.862 28 H 0.408 0.592 29 H 0.166 0.834 30 H 0.182 0.818 31 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.461 4.966 0.976 15.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C -0.179 4.179 3 Si 0.990 3.010 4 H -0.263 1.263 5 H -0.213 1.213 6 H -0.222 1.222 7 C -0.504 4.504 8 H 0.103 0.897 9 C 0.149 3.851 10 C -0.293 4.293 11 C -0.058 4.058 12 C -0.335 4.335 13 C 0.153 3.847 14 N -0.288 5.288 15 C 0.348 3.652 16 O -0.370 6.370 17 C -0.140 4.140 18 C -0.086 4.086 19 C -0.126 4.126 20 N -0.072 5.072 21 N -0.080 5.080 22 C -0.094 4.094 23 N -0.323 5.323 24 H 0.096 0.904 25 H 0.126 0.874 26 H 0.126 0.874 27 H 0.156 0.844 28 H 0.245 0.755 29 H 0.183 0.817 30 H 0.199 0.801 31 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 14.075 8.104 1.409 16.302 hybrid contribution 0.183 -3.828 -0.643 3.886 sum 14.259 4.276 0.766 14.905 Atomic orbital electron populations 1.70638 1.08159 1.32937 1.30598 1.27781 0.95344 1.06152 0.88613 0.81831 0.70778 0.69735 0.78629 1.26277 1.21259 1.22157 1.20768 0.90065 0.96414 1.43194 0.89681 1.18261 0.93462 0.85834 0.87561 1.21650 0.93889 0.98547 1.15182 1.20930 0.94109 0.96391 0.94402 1.21468 1.00787 0.91225 1.19985 1.17977 0.88879 0.83441 0.94358 1.43096 1.10213 1.13887 1.61598 1.17782 0.81599 0.86481 0.79355 1.90740 1.67158 1.39646 1.39496 1.21207 0.96018 0.96021 1.00799 1.22654 0.93391 0.98648 0.93883 1.24413 1.02526 0.90288 0.95412 1.72906 1.00943 1.26549 1.06760 1.73112 1.01357 1.19913 1.13640 1.24667 1.02214 0.89607 0.92886 1.65940 1.06497 1.29770 1.30073 0.90430 0.87447 0.87367 0.84423 0.75488 0.81667 0.80144 0.80542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.29 13.65 55.55 0.76 -20.53 16 2 C 0.04 1.13 5.52 -17.34 -0.10 1.03 16 3 Si 1.15 27.07 25.53 -169.99 -4.34 22.73 16 4 H -0.33 -7.67 7.11 56.52 0.40 -7.27 16 5 H -0.28 -6.30 6.70 56.52 0.38 -5.92 16 6 H -0.29 -6.96 7.10 56.52 0.40 -6.56 16 7 C -0.47 -12.48 9.58 -37.73 -0.36 -12.84 16 8 H 0.09 2.23 8.05 -52.48 -0.42 1.81 16 9 C 0.27 6.91 6.39 -85.00 -0.54 6.36 16 10 C -0.27 -6.17 9.83 -38.66 -0.38 -6.55 16 11 C -0.03 -0.71 10.15 -39.39 -0.40 -1.11 16 12 C -0.31 -6.58 8.83 -38.89 -0.34 -6.92 16 13 C 0.38 8.35 7.51 -155.04 -1.16 7.19 16 14 N -0.64 -11.16 5.36 -12.20 -0.07 -11.23 16 15 C 0.56 8.70 7.64 -12.22 -0.09 8.61 16 16 O -0.50 -8.83 13.29 5.35 0.07 -8.76 16 17 C -0.13 -1.50 5.92 -104.58 -0.62 -2.12 16 18 C -0.06 -0.53 9.77 -38.78 -0.38 -0.91 16 19 C 0.04 0.33 11.30 -17.42 -0.20 0.13 16 20 N -0.23 -2.71 11.48 30.53 0.35 -2.36 16 21 N -0.24 -3.04 11.49 30.79 0.35 -2.69 16 22 C 0.07 0.81 10.84 -16.95 -0.18 0.63 16 23 N -0.60 -14.52 4.59 -10.27 -0.05 -14.57 16 24 H 0.28 7.21 8.72 -40.82 -0.36 6.85 16 25 H 0.11 2.28 8.06 -52.49 -0.42 1.86 16 26 H 0.11 1.89 8.06 -52.49 -0.42 1.47 16 27 H 0.14 2.80 5.33 -52.50 -0.28 2.52 16 28 H 0.41 6.12 7.00 -40.82 -0.29 5.83 16 29 H 0.17 1.30 7.80 -52.48 -0.41 0.89 16 30 H 0.18 0.83 8.06 -52.48 -0.42 0.41 16 31 H 0.18 1.65 6.55 -52.48 -0.34 1.31 16 LS Contribution 277.20 15.07 4.18 4.18 Total: -1.00 -30.85 277.20 -5.69 -36.53 By element: Atomic # 1 Polarization: 5.39 SS G_CDS: -2.18 Total: 3.21 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: -4.76 Total: -6.52 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: 1.35 Total: -51.37 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: 0.07 Total: -8.76 kcal Atomic # 14 Polarization: 27.07 SS G_CDS: -4.34 Total: 22.73 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.85 -5.69 -36.53 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001455176828.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.334 kcal (2) G-P(sol) polarization free energy of solvation -30.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds