Wall clock time and date at job start Mon Mar 30 2020 01:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31588 * 118.99476 * 2 1 4 4 C 1.33445 * 120.90569 * 179.97438 * 3 2 1 5 5 C 1.43195 * 120.51864 * 180.02562 * 4 3 2 6 6 N 4.70632 * 132.85902 * 0.02562 * 2 1 3 7 7 C 1.39288 * 118.95840 * 359.74483 * 4 3 2 8 8 C 1.39699 * 118.18246 * 0.48925 * 7 4 3 9 9 N 1.38527 * 120.49853 * 179.78755 * 8 7 4 10 10 C 1.40545 * 119.99677 * 185.60323 * 9 8 7 11 11 C 1.40665 * 126.08524 * 353.95578 * 10 9 8 12 12 N 1.30913 * 108.39664 * 180.02562 * 11 10 9 13 13 N 1.40067 * 108.40251 * 0.02562 * 12 11 10 14 14 C 1.37318 * 126.06437 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99655 * 180.02562 * 14 13 12 16 16 C 1.38979 * 120.00220 * 0.02562 * 14 13 12 17 17 N 1.31297 * 119.99808 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99985 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47289 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47458 * 119.99706 * 18 16 14 21 21 H 1.48500 * 109.47304 * 239.99754 * 18 16 14 22 22 C 1.35685 * 126.07983 * 174.28931 * 10 9 8 23 23 N 1.31820 * 118.99325 * 179.97438 * 2 1 3 24 24 H 1.08999 * 109.47274 * 270.02656 * 1 2 3 25 25 H 1.09000 * 109.46996 * 30.02797 * 1 2 3 26 26 H 1.09003 * 109.46588 * 150.02492 * 1 2 3 27 27 H 1.07994 * 120.91085 * 180.27413 * 7 4 3 28 28 H 0.96997 * 120.00138 * 5.60203 * 9 8 7 29 29 H 1.08007 * 125.80200 * 0.03479 * 11 10 9 30 30 H 0.96995 * 120.00034 * 180.02562 * 17 16 14 31 31 H 1.07997 * 126.24910 * 359.95963 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1448 1.1509 0.0000 4 6 3.4786 1.1954 0.0005 5 6 4.1642 2.4526 0.0011 6 7 4.7082 3.4499 0.0015 7 6 4.1932 -0.0001 0.0065 8 6 3.4748 -1.1982 0.0012 9 7 4.1370 -2.4150 0.0023 10 6 3.4094 -3.6110 -0.1219 11 6 2.0079 -3.7307 -0.1348 12 7 1.7025 -4.9970 -0.2655 13 7 2.8918 -5.7331 -0.3405 14 6 2.9917 -7.0955 -0.4803 15 1 3.9638 -7.5636 -0.5274 16 6 1.8419 -7.8720 -0.5613 17 7 0.6601 -7.3029 -0.5035 18 14 1.9779 -9.7253 -0.7508 19 1 3.4103 -10.1152 -0.7895 20 1 1.3143 -10.3906 0.3991 21 1 1.3173 -10.1436 -2.0132 22 6 3.9339 -4.8564 -0.2444 23 7 2.1459 -1.1530 0.0005 24 1 -0.3634 0.0005 1.0276 25 1 -0.3633 0.8897 -0.5143 26 1 -0.3632 -0.8903 -0.5135 27 1 5.2731 -0.0009 0.0115 28 1 5.1027 -2.4415 0.0888 29 1 1.3035 -2.9162 -0.0512 30 1 -0.1424 -7.8448 -0.5596 31 1 4.9840 -5.1078 -0.2647 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001458132870.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:04 Heat of formation + Delta-G solvation = 177.003461 kcal Electronic energy + Delta-G solvation = -18889.379291 eV Core-core repulsion = 15787.841900 eV Total energy + Delta-G solvation = -3101.537390 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.98804 -39.54374 -36.92321 -36.06209 -33.53003 -33.36629 -31.65626 -30.31565 -28.54577 -27.63042 -25.57978 -24.33744 -22.78612 -20.56220 -19.99044 -19.18670 -17.96493 -16.87463 -16.11594 -15.68039 -15.40018 -15.33693 -14.80684 -14.01613 -13.80270 -13.73460 -13.53944 -13.30091 -12.98436 -12.77148 -12.69404 -12.22188 -11.75759 -11.65517 -11.44267 -11.24615 -11.03389 -10.56322 -10.55978 -9.92361 -9.52336 -8.99235 -8.88167 -8.79655 -8.13880 -6.67374 -6.64357 -4.30028 0.59281 1.27844 2.34484 2.84877 2.93739 2.99654 3.06173 3.13402 3.49811 3.50742 3.77865 3.98900 4.23162 4.34289 4.58088 4.91297 4.93916 4.94252 5.24323 5.37842 5.69948 5.80028 5.90940 6.15918 6.25836 6.42602 6.72304 6.86486 6.96497 7.11426 7.19251 7.53557 7.79337 7.87253 8.18992 8.43966 8.63003 9.27538 9.57277 10.31309 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.042436 B = 0.003873 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.652722 B = 7227.638614 C = 7863.507323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.372 3.628 3 N -0.552 5.552 4 C 0.267 3.733 5 C 0.278 3.722 6 N -0.393 5.393 7 C -0.253 4.253 8 C 0.445 3.555 9 N -0.586 5.586 10 C -0.065 4.065 11 C -0.027 4.027 12 N -0.262 5.262 13 N -0.141 5.141 14 C -0.321 4.321 15 H 0.117 0.883 16 C 0.047 3.953 17 N -0.767 5.767 18 Si 0.935 3.065 19 H -0.263 1.263 20 H -0.273 1.273 21 H -0.273 1.273 22 C -0.083 4.083 23 N -0.546 5.546 24 H 0.088 0.912 25 H 0.085 0.915 26 H 0.091 0.909 27 H 0.147 0.853 28 H 0.413 0.587 29 H 0.188 0.812 30 H 0.275 0.725 31 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.394 7.350 0.794 8.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.103 3.897 3 N -0.275 5.275 4 C 0.124 3.876 5 C -0.040 4.040 6 N -0.070 5.070 7 C -0.287 4.287 8 C 0.198 3.802 9 N -0.205 5.205 10 C -0.171 4.171 11 C -0.203 4.203 12 N -0.092 5.092 13 N 0.093 4.907 14 C -0.454 4.454 15 H 0.134 0.866 16 C -0.171 4.171 17 N -0.394 5.394 18 Si 0.758 3.242 19 H -0.187 1.187 20 H -0.199 1.199 21 H -0.199 1.199 22 C -0.235 4.235 23 N -0.272 5.272 24 H 0.106 0.894 25 H 0.104 0.896 26 H 0.110 0.890 27 H 0.165 0.835 28 H 0.249 0.751 29 H 0.205 0.795 30 H 0.086 0.914 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.978 7.742 0.677 8.019 hybrid contribution 2.073 -0.661 0.033 2.176 sum 4.051 7.081 0.710 8.188 Atomic orbital electron populations 1.20621 0.85362 1.04409 1.04114 1.22951 0.97729 0.81781 0.87267 1.68152 1.06874 1.30859 1.21593 1.16064 0.89376 0.86281 0.95878 1.24934 0.92949 0.91927 0.94179 1.81225 1.09153 1.09646 1.06958 1.21789 1.01786 0.91189 1.13895 1.18215 0.88365 0.85483 0.88149 1.41138 1.08098 1.01028 1.70251 1.17280 0.91876 0.83704 1.24248 1.24432 0.93178 0.95846 1.06868 1.78284 1.04174 1.01250 1.25465 1.44593 1.02477 1.05303 1.38374 1.19941 0.95499 0.77559 1.52387 0.86557 1.25638 0.94575 1.01391 0.95482 1.70212 0.97718 1.36379 1.35047 0.85760 0.79332 0.80496 0.78564 1.18687 1.19858 1.19864 1.21227 0.93724 0.88863 1.19665 1.68025 1.07694 1.29238 1.22263 0.89381 0.89644 0.88991 0.83550 0.75070 0.79546 0.91429 0.83727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.96 10.31 36.01 0.37 -0.59 16 2 C 0.37 5.37 7.64 -157.35 -1.20 4.17 16 3 N -0.55 -7.90 10.27 -8.79 -0.09 -7.99 16 4 C 0.27 3.54 6.61 -84.85 -0.56 2.98 16 5 C 0.28 3.62 15.59 -22.47 -0.35 3.27 16 6 N -0.39 -5.55 18.54 41.84 0.78 -4.77 16 7 C -0.25 -3.13 9.77 -38.65 -0.38 -3.51 16 8 C 0.45 6.82 7.48 -154.78 -1.16 5.66 16 9 N -0.59 -9.25 5.60 -9.98 -0.06 -9.31 16 10 C -0.06 -1.35 6.91 -83.86 -0.58 -1.93 16 11 C -0.03 -0.62 10.86 -17.03 -0.18 -0.81 16 12 N -0.26 -7.05 10.40 30.81 0.32 -6.73 16 13 N -0.14 -3.64 3.74 -11.40 -0.04 -3.68 16 14 C -0.32 -8.10 10.25 -14.82 -0.15 -8.25 16 15 H 0.12 2.63 7.83 -52.49 -0.41 2.22 16 16 C 0.05 1.15 5.50 -17.51 -0.10 1.05 16 17 N -0.77 -20.37 11.81 55.49 0.66 -19.72 16 18 Si 0.93 18.11 29.55 -169.99 -5.02 13.09 16 19 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 20 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 21 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 22 C -0.08 -1.82 11.50 -16.37 -0.19 -2.01 16 23 N -0.55 -9.02 6.55 -9.98 -0.07 -9.09 16 24 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 27 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 28 H 0.41 4.97 8.84 -40.82 -0.36 4.61 16 29 H 0.19 4.06 5.64 -52.48 -0.30 3.77 16 30 H 0.28 6.66 8.31 -40.82 -0.34 6.32 16 31 H 0.15 2.64 8.06 -52.49 -0.42 2.22 16 LS Contribution 291.34 15.07 4.39 4.39 Total: -1.00 -30.55 291.34 -5.93 -36.48 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -2.32 Total: 7.29 kcal Atomic # 6 Polarization: 4.51 SS G_CDS: -4.48 Total: 0.03 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: 1.50 Total: -61.28 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.02 Total: 13.09 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.55 -5.93 -36.48 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001458132870.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.486 kcal (2) G-P(sol) polarization free energy of solvation -30.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 182.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.482 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds