Wall clock time and date at job start Mon Mar 30 2020 01:39:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31588 * 118.99476 * 2 1 4 4 C 1.33445 * 120.90569 * 179.97438 * 3 2 1 5 5 C 1.43195 * 120.51864 * 180.02562 * 4 3 2 6 6 N 4.70632 * 132.85902 * 0.02562 * 2 1 3 7 7 C 1.39288 * 118.95840 * 359.74483 * 4 3 2 8 8 C 1.39699 * 118.18246 * 0.48925 * 7 4 3 9 9 N 1.38527 * 120.49853 * 179.78755 * 8 7 4 10 10 C 1.40545 * 119.99677 * 185.60323 * 9 8 7 11 11 C 1.40665 * 126.08524 * 353.95578 * 10 9 8 12 12 N 1.30913 * 108.39664 * 180.02562 * 11 10 9 13 13 N 1.40067 * 108.40251 * 0.02562 * 12 11 10 14 14 C 1.37318 * 126.06437 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99655 * 180.02562 * 14 13 12 16 16 C 1.38979 * 120.00220 * 0.02562 * 14 13 12 17 17 N 1.31297 * 119.99808 * 359.97438 * 16 14 13 18 18 Si 1.86794 * 119.99985 * 180.02562 * 16 14 13 19 19 H 1.48506 * 109.47289 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47458 * 119.99706 * 18 16 14 21 21 H 1.48500 * 109.47304 * 239.99754 * 18 16 14 22 22 C 1.35685 * 126.07983 * 174.28931 * 10 9 8 23 23 N 1.31820 * 118.99325 * 179.97438 * 2 1 3 24 24 H 1.08999 * 109.47274 * 270.02656 * 1 2 3 25 25 H 1.09000 * 109.46996 * 30.02797 * 1 2 3 26 26 H 1.09003 * 109.46588 * 150.02492 * 1 2 3 27 27 H 1.07994 * 120.91085 * 180.27413 * 7 4 3 28 28 H 0.96997 * 120.00138 * 5.60203 * 9 8 7 29 29 H 1.08007 * 125.80200 * 0.03479 * 11 10 9 30 30 H 0.96995 * 120.00034 * 180.02562 * 17 16 14 31 31 H 1.07997 * 126.24910 * 359.95963 * 22 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1448 1.1509 0.0000 4 6 3.4786 1.1954 0.0005 5 6 4.1642 2.4526 0.0011 6 7 4.7082 3.4499 0.0015 7 6 4.1932 -0.0001 0.0065 8 6 3.4748 -1.1982 0.0012 9 7 4.1370 -2.4150 0.0023 10 6 3.4094 -3.6110 -0.1219 11 6 2.0079 -3.7307 -0.1348 12 7 1.7025 -4.9970 -0.2655 13 7 2.8918 -5.7331 -0.3405 14 6 2.9917 -7.0955 -0.4803 15 1 3.9638 -7.5636 -0.5274 16 6 1.8419 -7.8720 -0.5613 17 7 0.6601 -7.3029 -0.5035 18 14 1.9779 -9.7253 -0.7508 19 1 3.4103 -10.1152 -0.7895 20 1 1.3143 -10.3906 0.3991 21 1 1.3173 -10.1436 -2.0132 22 6 3.9339 -4.8564 -0.2444 23 7 2.1459 -1.1530 0.0005 24 1 -0.3634 0.0005 1.0276 25 1 -0.3633 0.8897 -0.5143 26 1 -0.3632 -0.8903 -0.5135 27 1 5.2731 -0.0009 0.0115 28 1 5.1027 -2.4415 0.0888 29 1 1.3035 -2.9162 -0.0512 30 1 -0.1424 -7.8448 -0.5596 31 1 4.9840 -5.1078 -0.2647 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001458132870.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:39:04 Heat of formation + Delta-G solvation = 158.504895 kcal Electronic energy + Delta-G solvation = -18890.181449 eV Core-core repulsion = 15787.841900 eV Total energy + Delta-G solvation = -3102.339548 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 270.092 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.19087 -41.23277 -38.05914 -37.34255 -35.24200 -34.49682 -32.95072 -32.10013 -29.71547 -29.09085 -27.08778 -25.78845 -24.01517 -22.23241 -21.54317 -20.42865 -19.49471 -18.28051 -17.41710 -17.34107 -16.54842 -16.51103 -16.25375 -15.44351 -15.34426 -14.92364 -14.78835 -14.73860 -14.09382 -14.06056 -13.86691 -13.43032 -13.18425 -13.05083 -12.93596 -12.74393 -12.62427 -12.02062 -11.71443 -11.35261 -10.95848 -10.71730 -10.18304 -10.16823 -9.95815 -8.42053 -8.24349 -6.15517 -0.49668 0.12032 1.27761 1.33911 1.43070 1.60357 1.74531 1.89641 1.91496 2.18900 2.41170 2.52031 2.89798 2.94475 3.14216 3.25019 3.64027 3.90584 4.13324 4.42370 4.54525 4.68438 4.84302 4.86412 4.93473 5.07860 5.16273 5.37518 5.41040 5.77590 5.95718 6.10683 6.15244 6.49403 6.65698 6.88069 7.30382 7.52728 7.78343 8.57200 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.042436 B = 0.003873 C = 0.003560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.652722 B = 7227.638614 C = 7863.507323 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.364 3.636 3 N -0.554 5.554 4 C 0.262 3.738 5 C 0.295 3.705 6 N -0.408 5.408 7 C -0.226 4.226 8 C 0.435 3.565 9 N -0.585 5.585 10 C -0.044 4.044 11 C -0.045 4.045 12 N -0.311 5.311 13 N -0.174 5.174 14 C -0.354 4.354 15 H 0.135 0.865 16 C -0.004 4.004 17 N -0.822 5.822 18 Si 1.013 2.987 19 H -0.245 1.245 20 H -0.273 1.273 21 H -0.274 1.274 22 C -0.083 4.083 23 N -0.576 5.576 24 H 0.101 0.899 25 H 0.102 0.898 26 H 0.086 0.914 27 H 0.186 0.814 28 H 0.432 0.568 29 H 0.196 0.804 30 H 0.275 0.725 31 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.238 8.126 0.856 9.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.095 3.905 3 N -0.277 5.277 4 C 0.119 3.881 5 C -0.023 4.023 6 N -0.085 5.085 7 C -0.258 4.258 8 C 0.188 3.812 9 N -0.209 5.209 10 C -0.150 4.150 11 C -0.222 4.222 12 N -0.142 5.142 13 N 0.058 4.942 14 C -0.485 4.485 15 H 0.152 0.848 16 C -0.215 4.215 17 N -0.450 5.450 18 Si 0.833 3.167 19 H -0.168 1.168 20 H -0.199 1.199 21 H -0.199 1.199 22 C -0.234 4.234 23 N -0.302 5.302 24 H 0.119 0.881 25 H 0.121 0.879 26 H 0.104 0.896 27 H 0.203 0.797 28 H 0.272 0.728 29 H 0.212 0.788 30 H 0.085 0.915 31 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 3.859 8.580 0.743 9.437 hybrid contribution 1.556 -0.556 0.040 1.653 sum 5.416 8.024 0.782 9.712 Atomic orbital electron populations 1.20726 0.83554 1.04962 1.05127 1.23413 0.98854 0.81201 0.87014 1.68184 1.07622 1.30800 1.21068 1.16156 0.89179 0.86676 0.96059 1.24699 0.92445 0.91523 0.93611 1.81262 1.09712 1.09996 1.07531 1.22019 1.03521 0.89320 1.10946 1.18508 0.88433 0.86116 0.88117 1.40936 1.08727 0.99547 1.71726 1.17280 0.91145 0.85235 1.21378 1.24728 0.94970 0.95223 1.07275 1.78164 1.06235 1.02840 1.26941 1.44809 1.02860 1.05937 1.40615 1.20530 0.96649 0.78014 1.53315 0.84758 1.26736 0.93891 1.06400 0.94511 1.70374 0.98627 1.38313 1.37650 0.84607 0.80067 0.73913 0.78088 1.16760 1.19864 1.19899 1.21927 0.94815 0.88777 1.17844 1.67954 1.08849 1.30592 1.22850 0.88066 0.87900 0.89569 0.79664 0.72798 0.78768 0.91505 0.80228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.81 10.31 71.24 0.73 -1.07 16 2 C 0.36 9.99 7.64 138.80 1.06 11.05 16 3 N -0.55 -14.70 10.27 -181.72 -1.87 -16.56 16 4 C 0.26 6.21 6.61 40.40 0.27 6.48 16 5 C 0.29 6.88 15.59 88.33 1.38 8.25 16 6 N -0.41 -10.55 18.54 19.00 0.35 -10.20 16 7 C -0.23 -4.81 9.77 22.88 0.22 -4.59 16 8 C 0.43 12.32 7.48 133.19 1.00 13.32 16 9 N -0.59 -17.11 5.60 -185.48 -1.04 -18.15 16 10 C -0.04 -1.77 6.91 37.74 0.26 -1.51 16 11 C -0.04 -2.14 10.86 85.42 0.93 -1.21 16 12 N -0.31 -17.33 10.40 -56.45 -0.59 -17.91 16 13 N -0.17 -9.12 3.74 -190.00 -0.71 -9.83 16 14 C -0.35 -18.10 10.25 84.01 0.86 -17.23 16 15 H 0.14 6.03 7.83 -2.91 -0.02 6.00 16 16 C 0.00 -0.19 5.50 84.95 0.47 0.28 16 17 N -0.82 -45.50 11.81 21.66 0.26 -45.24 16 18 Si 1.01 37.53 29.55 68.60 2.03 39.56 16 19 H -0.24 -8.19 7.11 99.48 0.71 -7.48 16 20 H -0.27 -9.98 7.11 99.48 0.71 -9.28 16 21 H -0.27 -10.01 7.11 99.48 0.71 -9.30 16 22 C -0.08 -3.55 11.50 83.37 0.96 -2.59 16 23 N -0.58 -18.37 6.55 -185.50 -1.21 -19.59 16 24 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 25 H 0.10 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 27 H 0.19 2.45 8.06 -2.91 -0.02 2.43 16 28 H 0.43 8.97 8.84 -92.71 -0.82 8.15 16 29 H 0.20 8.66 5.64 -2.91 -0.02 8.64 16 30 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 31 H 0.18 6.13 8.06 -2.91 -0.02 6.11 16 Total: -1.00 -68.48 291.34 5.74 -62.74 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: 0.39 Total: 24.01 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: 8.13 Total: 11.18 kcal Atomic # 7 Polarization: -132.68 SS G_CDS: -4.81 Total: -137.49 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 2.03 Total: 39.56 kcal Total: -68.48 5.74 -62.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001458132870.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.241 kcal (2) G-P(sol) polarization free energy of solvation -68.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds