Wall clock time and date at job start Mon Mar 30 2020 01:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47274 * 2 1 4 4 H 1.09000 * 109.47198 * 305.00465 * 3 2 1 5 5 C 1.52999 * 109.47426 * 185.00190 * 3 2 1 6 6 N 1.46492 * 109.47242 * 185.00174 * 5 3 2 7 7 C 1.34787 * 119.99934 * 179.97438 * 6 5 3 8 8 O 1.21560 * 119.99961 * 0.02562 * 7 6 5 9 9 C 1.47749 * 119.99691 * 179.97438 * 7 6 5 10 10 C 1.39359 * 124.11183 * 180.02562 * 9 7 6 11 11 N 1.30089 * 112.14021 * 180.27066 * 10 9 7 12 12 S 1.55918 * 108.75977 * 359.59727 * 11 10 9 13 13 N 1.31482 * 124.12192 * 0.02562 * 9 7 6 14 14 N 1.46497 * 109.46734 * 65.00323 * 3 2 1 15 15 C 1.36940 * 119.99831 * 274.99773 * 14 3 2 16 16 H 1.07993 * 120.00063 * 0.02562 * 15 14 3 17 17 C 1.38813 * 119.99802 * 180.02562 * 15 14 3 18 18 N 1.31620 * 120.00515 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99979 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47192 * 59.99320 * 19 17 15 21 21 H 1.48493 * 109.47154 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46950 * 299.99596 * 19 17 15 23 23 H 1.08998 * 109.47296 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.47076 * 299.99967 * 1 2 3 25 25 H 1.09001 * 109.47135 * 59.99888 * 1 2 3 26 26 H 1.09004 * 109.46897 * 240.00369 * 2 1 3 27 27 H 1.09005 * 109.47472 * 120.00463 * 2 1 3 28 28 H 1.08996 * 109.47122 * 64.99538 * 5 3 2 29 29 H 1.09004 * 109.46721 * 305.00392 * 5 3 2 30 30 H 0.97000 * 120.00463 * 0.02562 * 6 5 3 31 31 H 1.08002 * 123.92565 * 359.97438 * 10 9 7 32 32 H 0.97000 * 120.00626 * 95.00394 * 14 3 2 33 33 H 0.96995 * 120.00449 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1258 6 7 4.0630 2.8167 -0.0060 7 6 5.3858 3.0629 -0.0859 8 8 6.1654 2.1461 -0.2578 9 6 5.8882 4.4471 0.0344 10 6 7.2349 4.7986 -0.0357 11 7 7.4153 6.0793 0.1048 12 16 6.0270 6.7634 0.2938 13 7 5.1192 5.4972 0.2206 14 7 1.6525 2.0973 1.2518 15 6 0.4157 2.6734 1.3689 16 1 -0.2742 2.6445 0.5385 17 6 0.0487 3.2943 2.5549 18 7 0.8892 3.3291 3.5671 19 14 -1.6388 4.0795 2.7148 20 1 -2.6865 3.0470 2.5112 21 1 -1.7834 4.6705 4.0694 22 1 -1.7881 5.1448 1.6910 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8900 28 1 3.8499 1.0377 -1.0960 29 1 3.9954 0.8310 0.6658 30 1 3.4411 3.5483 0.1316 31 1 8.0360 4.0897 -0.1842 32 1 2.2720 2.1230 1.9978 33 1 0.6327 3.7627 4.3960 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481791478.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:08 Heat of formation + Delta-G solvation = 27.749357 kcal Electronic energy + Delta-G solvation = -18316.847506 eV Core-core repulsion = 15311.989172 eV Total energy + Delta-G solvation = -3004.858334 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.05092 -38.90452 -36.70392 -34.08472 -33.31285 -32.34543 -29.78840 -28.41266 -27.03846 -24.09608 -23.07656 -21.96754 -20.28523 -19.79447 -19.36090 -17.75708 -17.03353 -16.07332 -15.65376 -15.36827 -15.17234 -14.43497 -13.98460 -13.86024 -13.21740 -13.02849 -12.67141 -12.25970 -12.18817 -11.49776 -11.43500 -11.20140 -11.04228 -10.97320 -10.88215 -10.76633 -10.47086 -10.21735 -10.07855 -9.90859 -9.54388 -9.26410 -8.96103 -8.72178 -7.04408 -5.81415 -3.10845 0.43054 1.37558 1.55330 1.59318 3.25673 3.35840 3.40236 3.45267 3.45963 4.49187 4.54156 4.96773 5.12307 5.36030 5.40310 5.42871 5.53760 5.89227 5.93095 5.94084 6.09337 6.37294 6.40120 6.49759 6.55077 6.58350 6.79777 6.99790 7.23632 7.65578 7.79473 8.33496 8.36075 9.47463 10.01824 10.37486 11.40341 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.016987 B = 0.005692 C = 0.004468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.898535 B = 4917.694641 C = 6265.535269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.162 3.838 4 H 0.055 0.945 5 C 0.113 3.887 6 N -0.687 5.687 7 C 0.599 3.401 8 O -0.539 6.539 9 C 0.016 3.984 10 C 0.087 3.913 11 N -0.584 5.584 12 S 0.710 5.290 13 N -0.533 5.533 14 N -0.721 5.721 15 C -0.238 4.238 16 H 0.073 0.927 17 C -0.010 4.010 18 N -0.929 5.929 19 Si 0.903 3.097 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.286 1.286 23 H 0.032 0.968 24 H 0.085 0.915 25 H 0.040 0.960 26 H 0.043 0.957 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.420 0.580 31 H 0.213 0.787 32 H 0.385 0.615 33 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.918 3.064 -8.140 12.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.073 0.927 5 C -0.012 4.012 6 N -0.338 5.338 7 C 0.378 3.622 8 O -0.416 6.416 9 C -0.160 4.160 10 C -0.108 4.108 11 N -0.424 5.424 12 S 0.752 5.248 13 N -0.382 5.382 14 N -0.363 5.363 15 C -0.369 4.369 16 H 0.090 0.910 17 C -0.206 4.206 18 N -0.577 5.577 19 Si 0.734 3.266 20 H -0.213 1.213 21 H -0.218 1.218 22 H -0.213 1.213 23 H 0.051 0.949 24 H 0.104 0.896 25 H 0.059 0.941 26 H 0.062 0.938 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.258 0.742 31 H 0.229 0.771 32 H 0.219 0.781 33 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.791 4.525 -7.982 12.707 hybrid contribution -0.639 -0.985 0.339 1.222 sum 8.152 3.540 -7.644 11.722 Atomic orbital electron populations 1.21768 0.95685 0.99646 1.03281 1.22066 0.97016 0.98246 1.00073 1.20574 0.89660 0.92982 0.91586 0.92746 1.21810 0.95983 0.81841 1.01527 1.45854 1.06437 1.11593 1.69917 1.16753 0.83158 0.84471 0.77808 1.90790 1.56282 1.43635 1.50938 1.22627 0.90900 0.95116 1.07320 1.23759 0.96979 0.90995 0.99020 1.72242 1.33376 1.13217 1.23600 1.79085 0.82407 1.16170 1.47163 1.72554 1.39661 1.06253 1.19727 1.42438 1.16820 1.65855 1.11200 1.19143 0.91877 1.27893 0.97982 0.90951 1.24729 0.98023 1.01484 0.96399 1.69648 1.35226 1.48848 1.03960 0.86336 0.84257 0.79242 0.76736 1.21281 1.21808 1.21305 0.94860 0.89639 0.94122 0.93785 0.92454 0.91323 0.91295 0.74158 0.77066 0.78090 0.93475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.18 37.16 0.34 -2.23 16 2 C -0.13 -2.24 5.61 -26.73 -0.15 -2.39 16 3 C 0.16 2.95 2.59 -67.93 -0.18 2.78 16 4 H 0.05 1.01 8.08 -51.93 -0.42 0.59 16 5 C 0.11 1.86 5.23 -4.05 -0.02 1.84 16 6 N -0.69 -11.74 5.39 -61.28 -0.33 -12.07 16 7 C 0.60 10.00 7.82 -12.37 -0.10 9.90 16 8 O -0.54 -9.76 16.80 5.31 0.09 -9.67 16 9 C 0.02 0.24 6.81 -83.71 -0.57 -0.34 16 10 C 0.09 1.10 11.22 -17.87 -0.20 0.90 16 11 N -0.58 -7.23 11.41 19.43 0.22 -7.01 16 12 S 0.71 7.98 23.69 -107.50 -2.55 5.43 16 13 N -0.53 -7.86 11.00 23.18 0.26 -7.60 16 14 N -0.72 -16.37 4.51 -53.43 -0.24 -16.61 16 15 C -0.24 -6.03 7.75 -15.06 -0.12 -6.15 16 16 H 0.07 1.79 7.32 -52.49 -0.38 1.40 16 17 C -0.01 -0.27 5.50 -17.43 -0.10 -0.36 16 18 N -0.93 -26.81 13.06 55.49 0.72 -26.08 16 19 Si 0.90 21.53 29.55 -169.99 -5.02 16.51 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 23 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 24 H 0.08 1.79 5.99 -51.93 -0.31 1.47 16 25 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 30 H 0.42 7.70 7.72 -40.82 -0.32 7.38 16 31 H 0.21 2.20 8.06 -52.49 -0.42 1.78 16 32 H 0.39 9.62 7.80 -40.82 -0.32 9.30 16 33 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 300.59 15.07 4.53 4.53 Total: -1.00 -29.44 300.59 -7.25 -36.69 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -3.84 Total: 11.94 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: -1.09 Total: 3.95 kcal Atomic # 7 Polarization: -70.01 SS G_CDS: 0.63 Total: -69.38 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 7.98 SS G_CDS: -2.55 Total: 5.43 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.44 -7.25 -36.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481791478.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.437 kcal (2) G-P(sol) polarization free energy of solvation -29.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.687 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds