Wall clock time and date at job start Mon Mar 30 2020 01:18:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47373 * 2 1 4 4 C 1.53002 * 109.46921 * 239.99635 * 2 1 3 5 5 N 1.46504 * 109.47061 * 184.99845 * 4 2 1 6 6 C 1.36939 * 119.99823 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00286 * 0.02562 * 6 5 4 8 8 C 1.38812 * 119.99769 * 180.02562 * 6 5 4 9 9 N 1.31621 * 120.00042 * 0.02562 * 8 6 5 10 10 Si 1.86796 * 120.00001 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.47217 * 89.99712 * 10 8 6 12 12 H 1.48492 * 109.47489 * 209.99962 * 10 8 6 13 13 H 1.48503 * 109.47244 * 330.00251 * 10 8 6 14 14 N 1.46508 * 109.47322 * 120.00234 * 2 1 3 15 15 C 1.46497 * 119.99705 * 59.99336 * 14 2 1 16 16 C 1.34777 * 119.99978 * 240.00038 * 14 2 1 17 17 O 1.21607 * 120.00053 * 3.03335 * 16 14 2 18 18 C 1.47439 * 119.99849 * 183.03524 * 16 14 2 19 19 C 1.37990 * 124.15638 * 173.36805 * 18 16 14 20 20 S 1.72096 * 104.03359 * 179.97438 * 19 18 16 21 21 N 1.56397 * 96.15806 * 359.97438 * 20 19 18 22 22 N 1.27423 * 109.87475 * 0.02562 * 21 20 19 23 23 H 1.09001 * 109.46668 * 300.00091 * 1 2 3 24 24 H 1.09003 * 109.47097 * 59.99469 * 1 2 3 25 25 H 1.08993 * 109.47474 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47586 * 305.00297 * 4 2 1 27 27 H 1.09000 * 109.46927 * 65.00790 * 4 2 1 28 28 H 0.96997 * 119.99739 * 0.02562 * 5 4 2 29 29 H 0.96997 * 119.99784 * 179.97438 * 9 8 6 30 30 H 1.09001 * 109.47291 * 264.08859 * 15 14 2 31 31 H 1.08994 * 109.47587 * 24.08935 * 15 14 2 32 32 H 1.08999 * 109.46886 * 144.09324 * 15 14 2 33 33 H 1.08001 * 127.98100 * 359.94006 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2492 5 7 3.5000 -0.8265 -1.1906 6 6 4.1837 -1.4390 -2.2067 7 1 3.6466 -1.8442 -3.0516 8 6 5.5671 -1.5391 -2.1509 9 7 6.2216 -1.0456 -1.1211 10 14 6.4998 -2.3740 -3.5374 11 1 6.8625 -1.3670 -4.5668 12 1 7.7349 -2.9974 -2.9980 13 1 5.6434 -3.4213 -4.1497 14 7 2.0184 -0.6907 1.1962 15 6 1.6643 -2.0932 1.4280 16 6 2.7932 -0.0357 2.0834 17 8 3.0416 1.1434 1.9197 18 6 3.3398 -0.7488 3.2523 19 6 4.2444 -0.2026 4.1397 20 16 4.5228 -1.4615 5.2797 21 7 3.5616 -2.5027 4.6179 22 7 3.0213 -1.9957 3.5812 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 1.6053 -1.7198 -1.2952 27 1 1.7516 -0.1584 -2.1369 28 1 3.9823 -0.4628 -0.4316 29 1 7.1882 -1.1159 -1.0819 30 1 0.7975 -2.1451 2.0868 31 1 1.4270 -2.5700 0.4771 32 1 2.5051 -2.6081 1.8928 33 1 4.6780 0.7864 4.1225 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482313404.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:18:32 Heat of formation + Delta-G solvation = 66.987570 kcal Electronic energy + Delta-G solvation = -18940.778711 eV Core-core repulsion = 15937.621874 eV Total energy + Delta-G solvation = -3003.156837 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 270.089 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.06612 -39.21908 -36.43034 -33.99459 -32.39496 -31.45561 -30.03745 -27.11081 -26.52355 -25.64113 -23.88483 -22.47265 -20.86043 -19.76300 -18.42468 -17.07112 -16.36387 -16.18869 -15.98205 -15.28724 -14.75814 -14.59290 -13.73218 -13.59478 -13.23407 -12.86915 -12.72239 -12.35496 -12.27047 -12.05988 -11.89898 -11.67262 -11.45390 -10.84764 -10.74734 -10.47498 -10.06776 -10.02586 -9.97280 -9.85910 -9.76122 -9.68627 -8.85867 -8.26573 -6.88892 -5.72744 -3.01695 0.11892 0.96208 1.57051 1.60631 3.19027 3.44336 3.44939 3.49488 3.51242 3.94016 4.60391 4.76752 4.88082 5.22586 5.38024 5.45138 5.55018 5.61249 5.69917 5.93037 6.02225 6.11060 6.20168 6.35988 6.43776 6.52804 6.73812 6.96749 7.51606 7.67765 7.71635 8.36205 8.44948 9.56436 10.14765 10.49897 11.49702 Molecular weight = 270.09amu Principal moments of inertia in cm(-1) A = 0.016289 B = 0.006655 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.516097 B = 4206.581656 C = 5280.335283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.125 3.875 3 H 0.102 0.898 4 C 0.143 3.857 5 N -0.728 5.728 6 C -0.239 4.239 7 H 0.070 0.930 8 C -0.014 4.014 9 N -0.931 5.931 10 Si 0.907 3.093 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.282 1.282 14 N -0.575 5.575 15 C 0.077 3.923 16 C 0.603 3.397 17 O -0.529 6.529 18 C -0.009 4.009 19 C -0.231 4.231 20 S 0.445 5.555 21 N -0.299 5.299 22 N -0.202 5.202 23 H 0.055 0.945 24 H 0.069 0.931 25 H 0.059 0.941 26 H 0.023 0.977 27 H 0.031 0.969 28 H 0.385 0.615 29 H 0.254 0.746 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.067 0.407 13.077 15.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.022 3.978 3 H 0.120 0.880 4 C 0.014 3.986 5 N -0.372 5.372 6 C -0.370 4.370 7 H 0.088 0.912 8 C -0.210 4.210 9 N -0.580 5.580 10 Si 0.738 3.262 11 H -0.217 1.217 12 H -0.219 1.219 13 H -0.208 1.208 14 N -0.306 5.306 15 C -0.066 4.066 16 C 0.386 3.614 17 O -0.405 6.405 18 C -0.156 4.156 19 C -0.388 4.388 20 S 0.581 5.419 21 N -0.279 5.279 22 N -0.073 5.073 23 H 0.074 0.926 24 H 0.088 0.912 25 H 0.078 0.922 26 H 0.041 0.959 27 H 0.049 0.951 28 H 0.219 0.781 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.092 0.908 32 H 0.114 0.886 33 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -7.916 -0.712 13.814 15.937 hybrid contribution 0.681 0.741 -1.619 1.906 sum -7.235 0.029 12.195 14.179 Atomic orbital electron populations 1.22049 0.94773 1.02309 1.02124 1.21509 0.93606 0.98461 0.84219 0.88000 1.21034 0.87112 0.96941 0.93488 1.42292 0.99685 1.70145 1.25124 1.19217 0.89428 1.29284 0.99048 0.91191 1.24744 0.96458 1.01729 0.98059 1.69687 1.07063 1.50992 1.30210 0.86194 0.79499 0.79005 0.81515 1.21733 1.21874 1.20790 1.47518 1.48545 1.12944 1.21564 1.22143 1.01882 0.80910 1.01683 1.16652 0.78547 0.85587 0.80595 1.90811 1.59744 1.14748 1.75236 1.22710 1.01111 0.91218 1.00546 1.28833 1.02039 1.08693 0.99274 1.81337 1.36376 0.97455 1.26741 1.78695 1.13527 1.26294 1.09337 1.71839 1.19941 1.08910 1.06616 0.92587 0.91221 0.92197 0.95910 0.95118 0.78114 0.93648 0.93069 0.90830 0.88550 0.77567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.19 37.16 0.34 -1.68 16 2 C 0.12 2.19 2.79 -67.93 -0.19 2.00 16 3 H 0.10 1.97 6.90 -51.93 -0.36 1.62 16 4 C 0.14 2.92 5.52 -4.04 -0.02 2.90 16 5 N -0.73 -19.09 5.43 -59.91 -0.33 -19.42 16 6 C -0.24 -6.83 9.99 -15.06 -0.15 -6.98 16 7 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 8 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 9 N -0.93 -28.97 13.06 55.49 0.72 -28.25 16 10 Si 0.91 22.89 29.55 -169.99 -5.02 17.86 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 N -0.57 -10.30 2.24 -175.20 -0.39 -10.69 16 15 C 0.08 1.23 8.54 59.85 0.51 1.74 16 16 C 0.60 11.54 7.36 -12.51 -0.09 11.45 16 17 O -0.53 -11.29 16.14 5.27 0.09 -11.21 16 18 C -0.01 -0.16 6.63 -83.78 -0.56 -0.71 16 19 C -0.23 -3.06 11.22 30.64 0.34 -2.71 16 20 S 0.45 4.70 23.38 -107.50 -2.51 2.19 16 21 N -0.30 -4.28 12.49 60.35 0.75 -3.53 16 22 N -0.20 -3.27 7.93 32.74 0.26 -3.01 16 23 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.73 7.67 -51.93 -0.40 0.33 16 26 H 0.02 0.46 6.87 -51.93 -0.36 0.10 16 27 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.38 10.94 7.06 -40.82 -0.29 10.65 16 29 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 1.16 6.54 -51.93 -0.34 0.82 16 32 H 0.10 1.69 5.29 -51.93 -0.27 1.42 16 33 H 0.21 2.32 8.06 -52.49 -0.42 1.90 16 LS Contribution 295.39 15.07 4.45 4.45 Total: -1.00 -34.16 295.39 -5.57 -39.72 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -3.68 Total: 6.37 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: 0.09 Total: 5.50 kcal Atomic # 7 Polarization: -65.91 SS G_CDS: 1.02 Total: -64.89 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.09 Total: -11.21 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.86 kcal Atomic # 16 Polarization: 4.70 SS G_CDS: -2.51 Total: 2.19 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -34.16 -5.57 -39.72 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482313404.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.711 kcal (2) G-P(sol) polarization free energy of solvation -34.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds